Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0017299

Physical Location & Seq

Genomic Coordinates Reverse (-)

9051918 .. 9053550

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10810.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTAGAGTTTTCCTATTTTTGGTTGTGGTTTGTTCTCATGTTGCTAAGTTATATGCAGTTTGGATTTATGTTAATTGCTTTGATATGGAAGTTTGACTTTGCACCCTTCATGGTATTGATCATCGCCATCCTAAATGACGGAACTATCATGACAATCTCAAAGGATCGAGTGAAGCCATCTCCACAGCCAGACAGCTGGAAACTGAGGGAGATCTTTGCTACTGGCATTGTCCTTGGAGGTTACTTGGCACTAATGACAGTAGTGTTCTTCTGGCTTATGAATGATACCGACTTCTTCTCGGAAAAGTTTCATGTGAGATCTTTGAGGGATAGGCCTGAGCAAATGATGGCGGCGTTGTACTTACAAGTGAGTATTGTGAGCCAAGCTCTTATTTTCGTCACAAGGTCTTGTAGCTGGTCTTTTGTTGAACGCCCTGGACTTCTCTTACTTGGAGCTTTCATGGTTGCTCAACTGGTTGCAACTCTCATAGCAGTCTATGCAAACTGGGGTTTTGCACGGATAAAGGGAGCTGGCTGGGGGTGGGCTGGTGTCATCTGGCTTTACAGTATAGTGACATATTTCCCTCTTGACTTTCTTAAATTCGCAATCCGATACATTCAAAGCGGAAAAGCGTGGAATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGATTATGGAAAAGAGGAGAGAGAAGCACAGTGGGCTGCAGCGCAGAGGACCCTTCACGGTCTTCAGCCACCTGAAACGAACAACCTTTTCAATGAGAAGAACAGTTACAGGGAGCTTTCCGAGATTGCAGAACAAGCCAAGAGGAGGGCTGAGGTTGCAAGGCTTCGTGAGTTGCATACTCTGAAGGGTCATGTTGAGTCAGTTGTGAAGCTGAAAGGACTTGACATCGATACAATTCAACAGCATTATACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

313

Amino Acids

36.12

Weight (kDa)

9.14

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03990
malus_domestica	MD17G1220200.v1.1
pyrus_communis	pycom04g05220 pycom04g05230 pycom08g10790 pycom08g10810 pycom08g10850 pycom08g10860 pycom08g10920 pycom15g09900 pycom16g21600
rosa_multiflora	Rmu_co8358687.1_g000001 Rmu_sc0000301.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	353, 627
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	2 cut(s)	728, 884
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	21, 825
AgsI	TTSAA	4 cut(s)	431, 623, 772, 920
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	7 cut(s)	198, 389, 417, 458, 533, 796, 892
AluI	AGCT	7 cut(s)	198, 389, 417, 458, 533, 796, 892
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	716, 719
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	729
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BbsI	GAAGAC	1 cut(s)	734
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	2 cut(s)	703, 731
BccI	CCATC	3 cut(s)	137, 187, 343
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	717
BglII	AGATCT	2 cut(s)	213, 320
BisI	GCNGC	3 cut(s)	354, 717, 720
BlsI	GCNGC	3 cut(s)	355, 718, 721
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	729
BmiI	GGNNCC	1 cut(s)	731
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	734
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
Bpu10I	CCTNAGC	2 cut(s)	339, 831
Bsa29I	ATCGAT	1 cut(s)	909
BsaJI	CCNNGG	2 cut(s)	235, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 825
Bse1I	ACTGG	3 cut(s)	229, 480, 512
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	235, 436
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	21, 825
BseMII	CTCAG	3 cut(s)	197, 330, 822
BseNI	ACTGG	3 cut(s)	229, 480, 512
BseRI	GAGGAG	2 cut(s)	710, 838
BseXI	GCAGC	2 cut(s)	703, 731
BseYI	CCCAGC	1 cut(s)	537
BshFI	GGCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	909
BslI	CCNNNNNNNGG	2 cut(s)	21, 825
BsnI	GGCC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	120, 166, 213, 320
BspACI	CCGC	2 cut(s)	353, 627
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	198, 331, 823
BspDI	ATCGAT	1 cut(s)	909
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	731
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	229, 480, 512
BssECI	CCNNGG	2 cut(s)	235, 436
BssMI	GATC	4 cut(s)	120, 166, 213, 320
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	6 cut(s)	262, 569, 711, 740, 785, 934
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	4 cut(s)	47, 206, 339, 831
BstF5I	GGATG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	4 cut(s)	123, 169, 216, 323
BstMBI	GATC	4 cut(s)	120, 166, 213, 320
BstMWI	GCNNNNNNNGC	4 cut(s)	500, 713, 815, 836
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	703, 731
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	2 cut(s)	213, 320
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	2 cut(s)	213, 320
Bsu15I	ATCGAT	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	729
ClaI	ATCGAT	1 cut(s)	909
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	6 cut(s)	40, 112, 151, 314, 463, 872
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	4 cut(s)	47, 206, 339, 831
DpnI	GATC	4 cut(s)	122, 168, 215, 322
DpnII	GATC	4 cut(s)	120, 166, 213, 320
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	729
Eco57I	CTGAAG	2 cut(s)	728, 884
EcoO109I	RGGNCCY	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	6 cut(s)	43, 115, 154, 317, 466, 875
FalI	AAGNNNNNCTT	4 cut(s)	83, 115, 650, 682
FatI	CATG	6 cut(s)	39, 111, 150, 313, 462, 871
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	354, 717, 720
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	354, 717, 720
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	3 cut(s)	354, 717, 720
GsaI	CCCAGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	6 cut(s)	43, 115, 154, 317, 466, 875
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HinfI	GANTC	1 cut(s)	878
Hpy188I	TCNGA	4 cut(s)	304, 614, 802, 864
Hpy188III	TCNNGA	3 cut(s)	151, 590, 848
HpyAV	CCTTC	4 cut(s)	118, 676, 743, 859
HpyCH4III	ACNGT	6 cut(s)	262, 569, 711, 740, 785, 934
HpyCH4V	TGCA	9 cut(s)	58, 104, 482, 503, 518, 719, 809, 839, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	500, 713, 815, 836
HpyF3I	CTNAG	4 cut(s)	47, 206, 339, 831
Hsp92II	CATG	6 cut(s)	43, 115, 154, 317, 466, 875
HspAI	GCGC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	120, 166, 213, 320
LmnI	GCTCC	3 cut(s)	455, 530, 793
Lsp1109I	GCAGC	2 cut(s)	703, 731
MaeIII	GTNAC	4 cut(s)	242, 400, 574, 785
MalI	GATC	4 cut(s)	122, 168, 215, 322
MboI	GATC	4 cut(s)	120, 166, 213, 320
MboII	GAAGA	4 cut(s)	262, 289, 734, 790
MflI	RGATCY	2 cut(s)	213, 320
MluCI	AATT	3 cut(s)	75, 602, 915
MlyI	GAGTC	1 cut(s)	887
MnlI	CCTC	9 cut(s)	201, 233, 321, 597, 688, 720, 816, 819, 826
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	74, 600
MspA1I	CMGCKG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	500, 713, 815, 836
NdeII	GATC	4 cut(s)	120, 166, 213, 320
NlaIII	CATG	6 cut(s)	43, 115, 154, 317, 466, 875
NlaIV	GGNNCC	1 cut(s)	731
NmuCI	GTSAC	2 cut(s)	400, 574
PagI	TCATGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	355, 718, 721
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	731
PspPI	GGNCC	1 cut(s)	729
PspPPI	RGGWCCY	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	213, 320
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	74, 600
SatI	GCNGC	3 cut(s)	354, 717, 720
Sau3AI	GATC	4 cut(s)	120, 166, 213, 320
Sau96I	GGNCC	1 cut(s)	729
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	729
Sse9I	AATT	3 cut(s)	75, 602, 915
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	353, 627
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	6 cut(s)	262, 569, 711, 740, 785, 934
TaqI	TCGA	2 cut(s)	169, 909
TasI	AATT	3 cut(s)	75, 602, 915
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	74, 600
Tru9I	TTAA	2 cut(s)	74, 600
TscAI	CASTG	1 cut(s)	716
TseFI	GTSAC	2 cut(s)	400, 574
TseI	GCWGC	2 cut(s)	716, 719
Tsp45I	GTSAC	2 cut(s)	400, 574
TspDTI	ATGAA	4 cut(s)	100, 296, 302, 451
TspGWI	ACGGA	2 cut(s)	156, 535
TspRI	CASTG	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.