pycom08g10860

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017299
Physical Location & Seq
Reverse (-)
9088272 .. 9089631
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10860.2

Sequence Viewer

Length: 768 bp
ATGTTAGGGTTTCCTATTTTTGGTTGTGTGTTTGTTCTCATGTTGCTAAGTTATGTGCAGTTTGGATTTATGCTAATTGCTTTGATATGGAAGTTTGACTTTGCACCCTTCATGGTATCGATCATCGCCATCCTAAATGATGGTAAGATTATCCGCCTATCTGTTTGTATGGGAACTATCATGACAATATCAAAGGATCGAGTGAAGCCATCTCCACAGCCAGATAGCTGGAAACTGAGGGAGATATTTGCTACTGGTATTGTCCTTGGAGGTTACTTGGCACTAATAACAGTAGTCTTCTTCTGGTTTATGAATGATACTGGCGTCTTCTCAGACAAGTTTCTTGTGAGATCTTTGAGGAATAGACATGAGCAAATGATGGCGGCGTTGTACTTACAAGTGAGTATTATGAGCCAAGCCCTTATTTTCGTCACAAGGTCTCGTAGCTGGTCTTTCGTTGAACGCCCTGGACTTCTCTTACTTGGAGCTTTCATGATTGCTCAACCGATGTCTGACTTTCTTAAATTCGCAAACCGATACATTCAAAGCGGAAAAACGTGGAATAATCTTTTGGAGAACAAGACTACCTTCACTACAAAGAAAGATTATGGAAAAAATGAGAGAGAAGCACAGTGGGCTGCAGCACAGAGGACCTTTCACGGTCTTCAGCCACTTGAAACAACCAACCTTTTCAATGAGAAGAATAGTTACAGGGAGCTTTCCGAGATTGCAGAACAAGCCAATCGGAGGGCTGAGGTTGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

256

Amino Acids

29.34

Weight (kDa)

9.69

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 154, 383, 549
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 20, 747
AgsI TTSAA 4 cut(s) 461, 545, 677, 694
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 4 cut(s) 228, 447, 488, 718
AluI AGCT 4 cut(s) 228, 447, 488, 718
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 638, 641
ApoI RAATTY 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 651
AvaII GGWCC 1 cut(s) 651
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
BbsI GAAGAC 3 cut(s) 289, 319, 656
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 625, 653
BccI CCATC 4 cut(s) 134, 137, 217, 373
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 639
BglII AGATCT 1 cut(s) 350
BisI GCNGC 3 cut(s) 384, 639, 642
BlsI GCNGC 3 cut(s) 385, 640, 643
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 651
BmgT120I GGNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 468
BpiI GAAGAC 3 cut(s) 289, 319, 656
Bpu10I CCTNAGC 1 cut(s) 753
Bsa29I ATCGAT 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 265, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 747
Bse1I ACTGG 2 cut(s) 259, 325
BseBI CCWGG 1 cut(s) 468
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 265, 466
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 20, 747
BseMII CTCAG 3 cut(s) 227, 345, 744
BseNI ACTGG 2 cut(s) 259, 325
BseXI GCAGC 2 cut(s) 625, 653
BsgI GTGCAG 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 20, 747
BsmAI GTCTC 1 cut(s) 444
Bso31I GGTCTC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 120, 196, 350
BspACI CCGC 3 cut(s) 154, 383, 549
BspCNI CTCAG 3 cut(s) 228, 344, 745
BspDI ATCGAT 1 cut(s) 119
BspHI TCATGA 2 cut(s) 180, 492
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 2 cut(s) 259, 325
BssECI CCNNGG 2 cut(s) 265, 466
BssMI GATC 3 cut(s) 120, 196, 350
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 292, 633, 662
BstACI GRCGYC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 47, 236, 331, 753
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 3 cut(s) 123, 199, 353
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 120, 196, 350
BstMWI GCNNNNNNNGC 3 cut(s) 635, 737, 758
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 625, 653
BstV2I GAAGAC 3 cut(s) 289, 319, 656
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 638
CciI TCATGA 2 cut(s) 180, 492
Cfr13I GGNCC 1 cut(s) 651
ClaI ATCGAT 1 cut(s) 119
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 391
CviAII CATG 5 cut(s) 40, 112, 181, 368, 493
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 47, 236, 331, 753
DpnI GATC 3 cut(s) 122, 198, 352
DpnII GATC 3 cut(s) 120, 196, 350
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 5 cut(s) 43, 115, 184, 371, 496
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 572, 604
FatI CATG 5 cut(s) 39, 111, 180, 367, 492
Fnu4HI GCNGC 3 cut(s) 384, 639, 642
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 384, 639, 642
GluI GCNGC 3 cut(s) 384, 639, 642
HgaI GACGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 43, 115, 184, 371, 496
Hpy188I TCNGA 4 cut(s) 334, 514, 724, 747
Hpy188III TCNNGA 2 cut(s) 181, 493
HpyAV CCTTC 2 cut(s) 118, 598
HpyCH4III ACNGT 3 cut(s) 292, 633, 662
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 5 cut(s) 58, 104, 641, 731, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 635, 737, 758
HpyF3I CTNAG 4 cut(s) 47, 236, 331, 753
HpySE526I ACGT 1 cut(s) 557
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 43, 115, 184, 371, 496
Kzo9I GATC 3 cut(s) 120, 196, 350
LmnI GCTCC 2 cut(s) 485, 715
LpnPI CCDG 9 cut(s) 214, 234, 240, 289, 306, 433, 453, 480, 697
Lsp1109I GCAGC 2 cut(s) 625, 653
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 3 cut(s) 272, 430, 707
MalI GATC 3 cut(s) 122, 198, 352
MboI GATC 3 cut(s) 120, 196, 350
MboII GAAGA 5 cut(s) 289, 292, 319, 656, 712
MflI RGATCY 1 cut(s) 350
MluCI AATT 2 cut(s) 75, 524
MnlI CCTC 6 cut(s) 231, 263, 351, 642, 741, 748
MseI TTAA 1 cut(s) 522
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 3 cut(s) 635, 737, 758
NdeII GATC 3 cut(s) 120, 196, 350
NlaIII CATG 5 cut(s) 43, 115, 184, 371, 496
NmuCI GTSAC 1 cut(s) 430
PagI TCATGA 2 cut(s) 180, 492
PkrI GCNGC 3 cut(s) 385, 640, 643
PpuMI RGGWCCY 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 1 cut(s) 651
PspPPI RGGWCCY 1 cut(s) 651
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 3 cut(s) 384, 639, 642
Sau3AI GATC 3 cut(s) 120, 196, 350
Sau96I GGNCC 1 cut(s) 651
ScrFI CCNGG 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 1 cut(s) 651
Sse9I AATT 2 cut(s) 75, 524
SsiI CCGC 3 cut(s) 154, 383, 549
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 292, 633, 662
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 119, 199
TasI AATT 2 cut(s) 75, 524
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 638, 641
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 100, 326, 481
TspRI CASTG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.