Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017299

Physical Location & Seq

Genomic Coordinates Forward (+)

5011509 .. 5012270

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGTGGTGTCGTGTGGATATACAACATTCTAATCTACATGCTACTTCAGATCCTGTCAAGATTTTTGTTCGATATGCACTCAGTGGGAGGGCCTGGAGTTTGGTATTGAACAAAAGAACGGCTTTCAACACCCAAAAAGACTTTGGTAAAGAGTTCCGTGAGGCTGCATGGGCGGCAGAACAGCGGACAGTCCATGGCCTCCCATCTATGGAGGCAAAGAACATTCCTGAGAGGCACACATACAGGGATGTTAGCATCATGGCTGAAGAAGCCAGGAGACGTGCAGAGATTGCAAGACTAAGGGAGCTTCACACTCTGAAGGGGAAGGTCGAGTCCTTTGCAAAGCTAAGGGGTTTAGACATCGAAACGAACCCAAATTACACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

9.77

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03990
malus_domestica	MD17G1220200.v1.1
pyrus_communis	pycom04g05220 pycom04g05230 pycom08g10790 pycom08g10810 pycom08g10850 pycom08g10860 pycom08g10920 pycom15g09900 pycom16g21600
rosa_multiflora	Rmu_co8358687.1_g000001 Rmu_sc0000301.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	176, 187
AclWI	GGATC	1 cut(s)	47
AcuI	CTGAAG	3 cut(s)	33, 288, 341
AdeI	CACNNNGTG	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	112, 130
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	95, 275
AluBI	AGCT	2 cut(s)	310, 349
AluI	AGCT	2 cut(s)	310, 349
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	93, 199
ApeKI	GCWGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	2 cut(s)	97, 277
BcoDI	GTCTC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	168, 177
BlsI	GCNGC	2 cut(s)	169, 178
Bme1390I	CCNGG	2 cut(s)	97, 277
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	97, 277
BmsI	GCATC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	97, 277
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	97, 222
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	95, 201
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	95, 201
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	2 cut(s)	176, 187
BspANI	GGCC	2 cut(s)	95, 201
BspCNI	CTCAG	2 cut(s)	96, 223
BspPI	GGATC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	97, 277
Bst4CI	ACNGT	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	83, 231, 302, 350
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 176, 272, 293
BstNI	CCWGG	2 cut(s)	97, 277
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	95, 275
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	95, 201
BtgI	CCRYGG	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	93
CviAII	CATG	4 cut(s)	41, 171, 197, 262
CviJI	RGCY	8 cut(s)	95, 125, 167, 201, 266, 275, 310, 349
CviKI_1	RGCY	8 cut(s)	95, 125, 167, 201, 266, 275, 310, 349
DdeI	CTNAG	4 cut(s)	83, 231, 302, 350
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	196
Eco57I	CTGAAG	3 cut(s)	33, 288, 341
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	95, 275
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	4 cut(s)	44, 174, 200, 265
FaiI	YATR	8 cut(s)	23, 42, 78, 172, 198, 212, 244, 263
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	4 cut(s)	40, 170, 196, 261
Fnu4HI	GCNGC	2 cut(s)	168, 177
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	168, 177
GluI	GCNGC	2 cut(s)	168, 177
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	95, 201
Hin1II	CATG	4 cut(s)	44, 174, 200, 265
HinfI	GANTC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	52, 321
Hpy188III	TCNNGA	2 cut(s)	61, 230
HpyAV	CCTTC	2 cut(s)	316, 322
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	80, 170, 287, 296, 344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 176, 272, 293
HpyF3I	CTNAG	4 cut(s)	83, 231, 302, 350
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	4 cut(s)	44, 174, 200, 265
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	69, 82, 109, 232, 243, 262, 289
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	283
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	84, 157, 208, 212, 228
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	97, 277
MvaI	CCWGG	2 cut(s)	97, 277
MwoI	GCNNNNNNNGC	4 cut(s)	173, 176, 272, 293
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	44, 174, 200, 265
NspI	RCATGY	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	169, 178
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	95, 275
PspGI	CCWGG	2 cut(s)	95, 275
PspPI	GGNCC	1 cut(s)	93
PsrI	GAACNNNNNNTAC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	52
SatI	GCNGC	2 cut(s)	168, 177
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	97, 277
SetI	ASST	4 cut(s)	286, 312, 333, 351
SfaNI	GCATC	1 cut(s)	267
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	2 cut(s)	176, 187
StyD4I	CCNGG	2 cut(s)	95, 275
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	73, 333, 366
TasI	AATT	1 cut(s)	379
TauI	GCSGC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.