Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012067

Physical Location & Seq

Genomic Coordinates Reverse (-)

29744018 .. 29748465

Gene Structure 4448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1248600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTATTTCATACAGAGATTTTTATTTTATTTTGGGATAAGGCTTGGTGGTTGTTATTGTTGTTGTACAATGTGTCAATGTCCTATTCTGTTTCAGATGATGATGTTAATGTGTCTGATTGTGGACTGCAAGACTTTTCATTAATGCCATTGTTGGATGCCCTGCATGCCGATAAAACATTTGCAATGATTTGCGAATGCCCTTTGCTATTTGCTCGATTGGAAGTGCTCAATATCTCTGAAAATCCTCTCACTGATACATGTGCATCTTGCCTCTCCACTATCTTGGAAAATTGCAAGGCTCTTTGCAGCTTGAGCATAGAGCGCTGTTCTGTCACGTCTAGAACAATTCAAAAGGTTGCCGAGGCATTGAATGCTGATTCTGTGCTTGAGCAACTTTGTATAGGATTAAGTCTTCGGGAAACTGGTATTGGTATTGATGAGGCATTACTATTAACTGAGTCATTGTTCAACCAAACTTCAGAGTTTGTGAAACTTAACTTTTCAAAATGTAAAGTGACGTCTAATTATATTCACAGACTAAGCACCGATTCTTCTATGATTTGTGGCATTGTTGAGCTGAACCTTTCGGAAAATCCTATCACGGAGAAGGTTTGTTCTCTCATTTGTATATACAAATACATGAAGATATGCTGCCTTTATAAACCTGAGATTTTTTGTTGGAGCTGCATGAGATTATTTTGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

237

Amino Acids

26.7

Weight (kDa)

4.76

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18730
fragaria_vesca	FvH4_1g23980 FvH4_1g23980 FvH4_1g23980
malus_domestica	MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1
prunus_persica	Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1
pyrus_communis	pycom09g17130
rosa_chinensis	RchiOBHm_Chr2g0120111
rosa_laevigata	RLG00000018521
rosa_multiflora	Rmu_sc0010863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123720
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283400 Rh2BG294700 Rh2DG308400
rosa_wichuraiana	Rw2G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AatII	GACGTC	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	353, 373, 472, 507
AjiI	CACGTC	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	3 cut(s)	312, 580, 687
AluI	AGCT	3 cut(s)	312, 580, 687
Alw21I	GWGCWC	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	309, 654, 687
AseI	ATTAAT	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	321, 641, 674
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	3 cut(s)	310, 655, 688
BlsI	GCNGC	3 cut(s)	311, 656, 689
BmgBI	CACGTC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	148, 275
BpiI	GAAGAC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	334, 410
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	450, 660
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	3 cut(s)	321, 641, 674
BsiHKAI	GWGCWC	1 cut(s)	231
BsmI	GAATGC	2 cut(s)	203, 379
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	451, 661
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	459, 542, 669
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 315, 324, 374
BstNSI	RCATGY	2 cut(s)	170, 264
BstV1I	GCAGC	3 cut(s)	321, 641, 674
BstV2I	GAAGAC	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	167, 261, 643, 691
CviJI	RGCY	5 cut(s)	44, 302, 312, 580, 687
CviKI_1	RGCY	5 cut(s)	44, 302, 312, 580, 687
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	459, 542, 669
Eco47III	AGCGCT	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	465
FaeI	CATG	4 cut(s)	170, 264, 646, 694
FatI	CATG	4 cut(s)	166, 260, 642, 690
Fnu4HI	GCNGC	3 cut(s)	310, 655, 688
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	310, 655, 688
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	310, 655, 688
HaeII	RGCGCY	1 cut(s)	328
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	170, 264, 646, 694
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	380, 461, 551
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	5 cut(s)	97, 118, 241, 484, 592
Hpy188III	TCNNGA	2 cut(s)	342, 419
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	338, 521
HpyCH4V	TGCA	7 cut(s)	130, 166, 185, 266, 297, 309, 690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 315, 324, 374
HpyF3I	CTNAG	3 cut(s)	459, 542, 669
HpySE526I	ACGT	2 cut(s)	338, 521
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	4 cut(s)	170, 264, 646, 694
HspAI	GCGC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	684
LpnPI	CCDG	3 cut(s)	176, 411, 681
Lsp1109I	GCAGC	3 cut(s)	321, 641, 674
LweI	GCATC	2 cut(s)	148, 275
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	338, 521
MaeIII	GTNAC	2 cut(s)	334, 517
MboII	GAAGA	3 cut(s)	407, 546, 658
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	292, 348, 526
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	135, 662
MnlI	CCTC	4 cut(s)	258, 284, 358, 436
MseI	TTAA	6 cut(s)	108, 143, 410, 455, 498, 709
Mva1269I	GAATGC	2 cut(s)	203, 379
MwoI	GCNNNNNNNGC	4 cut(s)	167, 315, 324, 374
NlaIII	CATG	4 cut(s)	170, 264, 646, 694
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	334, 517
NspI	RCATGY	2 cut(s)	170, 264
PaeI	GCATGC	1 cut(s)	170
PciI	ACATGT	1 cut(s)	260
PctI	GAATGC	2 cut(s)	203, 379
PfeI	GAWTC	2 cut(s)	380, 551
PkrI	GCNGC	3 cut(s)	311, 656, 689
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	663
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	6 cut(s)	108, 143, 410, 455, 498, 709
SatI	GCNGC	3 cut(s)	310, 655, 688
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	314, 341, 360, 524, 582, 588, 615, 670, 689
SfaNI	GCATC	2 cut(s)	148, 275
SmlI	CTYRAG	2 cut(s)	313, 389
SmoI	CTYRAG	2 cut(s)	313, 389
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	3 cut(s)	292, 348, 526
SspMI	CTAG	1 cut(s)	342
TaiI	ACGT	2 cut(s)	341, 524
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	292, 348, 526
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	380, 551
Tru1I	TTAA	6 cut(s)	108, 143, 410, 455, 498, 709
Tru9I	TTAA	6 cut(s)	108, 143, 410, 455, 498, 709
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	334, 517
TseI	GCWGC	3 cut(s)	309, 654, 687
Tsp45I	GTSAC	2 cut(s)	334, 517
TspDTI	ATGAA	2 cut(s)	129, 659
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	341
XceI	RCATGY	2 cut(s)	170, 264
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.