Tetratricopeptide repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18730 |
| fragaria_vesca | FvH4_1g23980 FvH4_1g23980 FvH4_1g23980 |
| malus_domestica | MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1 |
| prunus_persica | Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1 |
| pyrus_communis | pycom09g17130 |
| rosa_chinensis | RchiOBHm_Chr2g0120111 |
| rosa_laevigata | RLG00000018521 |
| rosa_multiflora | Rmu_sc0010863.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00123720 |
| rosa_rugosa | Rorug02G0226800 |
| rosa_samantha | Rh2AG283400 Rh2BG294700 Rh2DG308400 |
| rosa_wichuraiana | Rw2G022700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 167 |
| AatII | GACGTC | 1 cut(s) | 171 |
| Acc16I | TGCGCA | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 1 cut(s) | 2177 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3056 |
| AccBSI | CCGCTC | 2 cut(s) | 1709, 2956 |
| AccII | CGCG | 2 cut(s) | 29, 988 |
| AccIII | TCCGGA | 1 cut(s) | 3377 |
| AciI | CCGC | 5 cut(s) | 29, 986, 1346, 1707, 2956 |
| AclI | AACGTT | 1 cut(s) | 2774 |
| AclWI | GGATC | 1 cut(s) | 1521 |
| AcoI | YGGCCR | 4 cut(s) | 30, 724, 966, 1798 |
| AcsI | RAATTY | 6 cut(s) | 1079, 1955, 3281, 3430, 3706, 3769 |
| AcuI | CTGAAG | 2 cut(s) | 944, 1088 |
| AcvI | CACGTG | 1 cut(s) | 824 |
| AcyI | GRCGYC | 1 cut(s) | 168 |
| AdeI | CACNNNGTG | 2 cut(s) | 224, 989 |
| AfaI | GTAC | 9 cut(s) | 182, 349, 1205, 1371, 1857, 1990, 2513, 2716, 3064 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 76, 147, 391, 739, 1200, 3056 |
| AflII | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| AflIII | ACRYGT | 2 cut(s) | 108, 1807 |
| AjnI | CCWGG | 3 cut(s) | 1061, 1436, 2045 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 398, 430, 3201, 3233 |
| Alw21I | GWGCWC | 5 cut(s) | 231, 291, 1315, 2862, 3021 |
| Alw26I | GTCTC | 6 cut(s) | 175, 954, 1733, 1972, 2534, 2885 |
| AlwI | GGATC | 1 cut(s) | 1521 |
| Ama87I | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| Aor13HI | TCCGGA | 1 cut(s) | 3377 |
| AoxI | GGCC | 8 cut(s) | 30, 138, 327, 724, 966, 1434, 1798, 2752 |
| ApoI | RAATTY | 6 cut(s) | 1079, 1955, 3281, 3430, 3706, 3769 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1859, 1891 |
| AseI | ATTAAT | 1 cut(s) | 1269 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2427 |
| AspLEI | GCGC | 5 cut(s) | 19, 29, 502, 621, 1384 |
| AspS9I | GGNCC | 8 cut(s) | 139, 327, 2488, 2686, 2801, 3457, 3784, 3880 |
| AsuHPI | GGTGA | 6 cut(s) | 116, 236, 776, 1289, 1711, 2411 |
| AsuII | TTCGAA | 1 cut(s) | 3496 |
| AvaI | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| AvaII | GGWCC | 6 cut(s) | 2488, 2686, 2801, 3457, 3784, 3880 |
| BaeGI | GKGCMC | 1 cut(s) | 2182 |
| BalI | TGGCCA | 2 cut(s) | 726, 968 |
| BanI | GGYRCC | 1 cut(s) | 2177 |
| BanII | GRGCYC | 2 cut(s) | 231, 291 |
| BauI | CACGAG | 1 cut(s) | 71 |
| BbrPI | CACGTG | 1 cut(s) | 824 |
| Bbv12I | GWGCWC | 5 cut(s) | 231, 291, 1315, 2862, 3021 |
| BbvCI | CCTCAGC | 1 cut(s) | 294 |
| BceAI | ACGGC | 1 cut(s) | 1785 |
| BciT130I | CCWGG | 3 cut(s) | 1063, 1438, 2047 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcoDI | GTCTC | 6 cut(s) | 175, 954, 1733, 1972, 2534, 2885 |
| BfmI | CTRYAG | 6 cut(s) | 1007, 1399, 2729, 3147, 3267, 3934 |
| BfoI | RGCGCY | 1 cut(s) | 1385 |
| BfrI | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| BglII | AGATCT | 1 cut(s) | 1486 |
| BlpI | GCTNAGC | 2 cut(s) | 23, 3137 |
| BmcAI | AGTACT | 1 cut(s) | 182 |
| Bme1390I | CCNGG | 3 cut(s) | 1063, 1438, 2047 |
| Bme18I | GGWCC | 6 cut(s) | 2488, 2686, 2801, 3457, 3784, 3880 |
| BmeT110I | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| BmgT120I | GGNCC | 8 cut(s) | 139, 327, 2488, 2686, 2801, 3457, 3784, 3880 |
| BmiI | GGNNCC | 6 cut(s) | 68, 629, 1656, 2110, 2179, 2489 |
| BmrFI | CCNGG | 3 cut(s) | 1063, 1438, 2047 |
| BmrI | ACTGGG | 1 cut(s) | 3596 |
| BmsI | GCATC | 9 cut(s) | 247, 289, 487, 844, 1309, 1459, 2878, 2986, 3674 |
| BmuI | ACTGGG | 1 cut(s) | 3596 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1126, 1158 |
| BpmI | CTGGAG | 2 cut(s) | 2600, 3507 |
| Bpu10I | CCTNAGC | 4 cut(s) | 54, 294, 662, 3788 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 23, 3137 |
| Bpu14I | TTCGAA | 1 cut(s) | 3496 |
| BpuEI | CTTGAG | 6 cut(s) | 128, 263, 467, 542, 2965, 3383 |
| BsaAI | YACGTR | 2 cut(s) | 133, 824 |
| BsaHI | GRCGYC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 4 cut(s) | 640, 733, 1695, 2418 |
| BsaWI | WCCGGW | 1 cut(s) | 3377 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 71, 101, 155, 185 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 76, 147, 391, 739, 1200, 3056 |
| Bse1I | ACTGG | 7 cut(s) | 214, 834, 1629, 2322, 3217, 3591, 3786 |
| Bse3DI | GCAATG | 6 cut(s) | 196, 727, 1576, 2112, 2685, 3604 |
| BseAI | TCCGGA | 1 cut(s) | 3377 |
| BseBI | CCWGG | 3 cut(s) | 1063, 1438, 2047 |
| BseDI | CCNNGG | 4 cut(s) | 640, 733, 1695, 2418 |
| BseGI | GGATG | 8 cut(s) | 304, 672, 859, 922, 1969, 2489, 3728, 3888 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 76, 147, 391, 739, 1200, 3056 |
| BseMI | GCAATG | 6 cut(s) | 196, 727, 1576, 2112, 2685, 3604 |
| BseNI | ACTGG | 7 cut(s) | 214, 834, 1629, 2322, 3217, 3591, 3786 |
| BseRI | GAGGAG | 2 cut(s) | 89, 92 |
| BseSI | GKGCMC | 1 cut(s) | 2182 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 988 |
| BshFI | GGCC | 8 cut(s) | 32, 140, 329, 726, 968, 1436, 1800, 2754 |
| BshNI | GGYRCC | 1 cut(s) | 2177 |
| BsiHKAI | GWGCWC | 5 cut(s) | 231, 291, 1315, 2862, 3021 |
| BsiHKCI | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| BsiSI | CCGG | 1 cut(s) | 3378 |
| BslFI | GGGAC | 1 cut(s) | 3493 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 76, 147, 391, 739, 1200, 3056 |
| BsmAI | GTCTC | 6 cut(s) | 175, 954, 1733, 1972, 2534, 2885 |
| BsmBI | CGTCTC | 2 cut(s) | 175, 2885 |
| BsmFI | GGGAC | 1 cut(s) | 3493 |
| BsmI | GAATGC | 6 cut(s) | 406, 522, 2656, 2834, 3010, 3357 |
| BsnI | GGCC | 8 cut(s) | 32, 140, 329, 726, 968, 1436, 1800, 2754 |
| BsoBI | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| Bsp119I | TTCGAA | 1 cut(s) | 3496 |
| Bsp1286I | GDGCHC | 6 cut(s) | 231, 291, 1315, 2182, 2862, 3021 |
| Bsp13I | TCCGGA | 1 cut(s) | 3377 |
| Bsp1407I | TGTACA | 2 cut(s) | 1369, 2511 |
| Bsp143I | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 23, 3137 |
| BspACI | CCGC | 5 cut(s) | 29, 986, 1346, 1707, 2956 |
| BspANI | GGCC | 8 cut(s) | 32, 140, 329, 726, 968, 1436, 1800, 2754 |
| BspEI | TCCGGA | 1 cut(s) | 3377 |
| BspFNI | CGCG | 2 cut(s) | 29, 988 |
| BspLI | GGNNCC | 6 cut(s) | 68, 629, 1656, 2110, 2179, 2489 |
| BspMAI | CTGCAG | 4 cut(s) | 1011, 2733, 3271, 3938 |
| BspPI | GGATC | 1 cut(s) | 1521 |
| BspQI | GCTCTTC | 2 cut(s) | 267, 927 |
| BspT104I | TTCGAA | 1 cut(s) | 3496 |
| BspT107I | GGYRCC | 1 cut(s) | 2177 |
| BspTI | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| BsrBI | CCGCTC | 2 cut(s) | 1709, 2956 |
| BsrDI | GCAATG | 6 cut(s) | 196, 727, 1576, 2112, 2685, 3604 |
| BsrGI | TGTACA | 2 cut(s) | 1369, 2511 |
| BsrI | ACTGG | 7 cut(s) | 214, 834, 1629, 2322, 3217, 3591, 3786 |
| BssECI | CCNNGG | 4 cut(s) | 640, 733, 1695, 2418 |
| BssMI | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| BssNI | GRCGYC | 1 cut(s) | 168 |
| BssSI | CACGAG | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 3 cut(s) | 640, 733, 1695 |
| Bst2BI | CACGAG | 1 cut(s) | 71 |
| Bst2UI | CCWGG | 3 cut(s) | 1063, 1438, 2047 |
| BstACI | GRCGYC | 1 cut(s) | 168 |
| BstAFI | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1319, 3005 |
| BstAUI | TGTACA | 2 cut(s) | 1369, 2511 |
| BstBAI | YACGTR | 2 cut(s) | 133, 824 |
| BstBI | TTCGAA | 1 cut(s) | 3496 |
| BstDSI | CCRYGG | 1 cut(s) | 2418 |
| BstF5I | GGATG | 8 cut(s) | 304, 672, 859, 922, 1969, 2489, 3728, 3888 |
| BstFNI | CGCG | 2 cut(s) | 29, 988 |
| BstH2I | RGCGCY | 1 cut(s) | 1385 |
| BstHHI | GCGC | 5 cut(s) | 19, 29, 502, 621, 1384 |
| BstKTI | GATC | 8 cut(s) | 102, 877, 1489, 1516, 2360, 2578, 3848, 3888 |
| BstMAI | GTCTC | 6 cut(s) | 175, 954, 1733, 1972, 2534, 2885 |
| BstMBI | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| BstNI | CCWGG | 3 cut(s) | 1063, 1438, 2047 |
| BstNSI | RCATGY | 3 cut(s) | 112, 2738, 2895 |
| BstSCI | CCNGG | 3 cut(s) | 1061, 1436, 2045 |
| BstSFI | CTRYAG | 6 cut(s) | 1007, 1399, 2729, 3147, 3267, 3934 |
| BstSLI | GKGCMC | 1 cut(s) | 2182 |
| BstUI | CGCG | 2 cut(s) | 29, 988 |
| BstX2I | RGATCY | 1 cut(s) | 1486 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2762, 3760 |
| BstYI | RGATCY | 1 cut(s) | 1486 |
| BsuRI | GGCC | 8 cut(s) | 32, 140, 329, 726, 968, 1436, 1800, 2754 |
| BtgI | CCRYGG | 1 cut(s) | 2418 |
| BtsCI | GGATG | 8 cut(s) | 304, 672, 859, 922, 1969, 2489, 3728, 3888 |
| BtsI | GCAGTG | 1 cut(s) | 1516 |
| BtsIMutI | CAGTG | 7 cut(s) | 1297, 1516, 1636, 2514, 2883, 3069, 3333 |
| CfoI | GCGC | 5 cut(s) | 19, 29, 502, 621, 1384 |
| Cfr13I | GGNCC | 8 cut(s) | 139, 327, 2488, 2686, 2801, 3457, 3784, 3880 |
| CseI | GACGC | 1 cut(s) | 3824 |
| Csp6I | GTAC | 9 cut(s) | 181, 348, 1204, 1370, 1856, 1989, 2512, 2715, 3063 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1485, 1520, 1558, 1593 |
| CviQI | GTAC | 9 cut(s) | 181, 348, 1204, 1370, 1856, 1989, 2512, 2715, 3063 |
| DpnI | GATC | 8 cut(s) | 101, 876, 1488, 1515, 2359, 2577, 3847, 3887 |
| DpnII | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| DraIII | CACNNNGTG | 2 cut(s) | 224, 989 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 167 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 167 |
| EaeI | YGGCCR | 4 cut(s) | 30, 724, 966, 1798 |
| Ecl136II | GAGCTC | 2 cut(s) | 229, 289 |
| Eco130I | CCWWGG | 3 cut(s) | 640, 733, 1695 |
| Eco24I | GRGCYC | 2 cut(s) | 231, 291 |
| Eco32I | GATATC | 1 cut(s) | 2140 |
| Eco47I | GGWCC | 6 cut(s) | 2488, 2686, 2801, 3457, 3784, 3880 |
| Eco53kI | GAGCTC | 2 cut(s) | 229, 289 |
| Eco57I | CTGAAG | 2 cut(s) | 944, 1088 |
| Eco72I | CACGTG | 1 cut(s) | 824 |
| Eco88I | CYCGRG | 3 cut(s) | 6, 681, 3020 |
| EcoICRI | GAGCTC | 2 cut(s) | 229, 289 |
| EcoO109I | RGGNCCY | 1 cut(s) | 139 |
| EcoRI | GAATTC | 1 cut(s) | 3430 |
| EcoRII | CCWGG | 3 cut(s) | 1061, 1436, 2045 |
| EcoRV | GATATC | 1 cut(s) | 2140 |
| EcoT14I | CCWWGG | 3 cut(s) | 640, 733, 1695 |
| EcoT22I | ATGCAT | 4 cut(s) | 1324, 2225, 2893, 3001 |
| EcoT38I | GRGCYC | 2 cut(s) | 231, 291 |
| ErhI | CCWWGG | 3 cut(s) | 640, 733, 1695 |
| Esp3I | CGTCTC | 2 cut(s) | 175, 2885 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 246, 278, 789, 821, 2355, 2387 |
| FaqI | GGGAC | 1 cut(s) | 3493 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FokI | GGATG | 8 cut(s) | 311, 679, 866, 929, 1976, 2496, 3735, 3875 |
| FriOI | GRGCYC | 2 cut(s) | 231, 291 |
| FspAI | RTGCGCAY | 1 cut(s) | 501 |
| FspI | TGCGCA | 1 cut(s) | 501 |
| GlaI | GCGC | 5 cut(s) | 18, 28, 501, 620, 1383 |
| GsuI | CTGGAG | 2 cut(s) | 2600, 3507 |
| HaeII | RGCGCY | 1 cut(s) | 1385 |
| HaeIII | GGCC | 8 cut(s) | 32, 140, 329, 726, 968, 1436, 1800, 2754 |
| HapII | CCGG | 1 cut(s) | 3378 |
| HgaI | GACGC | 1 cut(s) | 3824 |
| HhaI | GCGC | 5 cut(s) | 19, 29, 502, 621, 1384 |
| Hin1I | GRCGYC | 1 cut(s) | 168 |
| Hin6I | GCGC | 5 cut(s) | 17, 27, 500, 619, 1382 |
| HinP1I | GCGC | 5 cut(s) | 17, 27, 500, 619, 1382 |
| HincII | GTYRAC | 1 cut(s) | 2772 |
| HindII | GTYRAC | 1 cut(s) | 2772 |
| HindIII | AAGCTT | 5 cut(s) | 431, 1686, 2435, 2469, 3086 |
| HpaI | GTTAAC | 1 cut(s) | 2772 |
| HpaII | CCGG | 1 cut(s) | 3378 |
| HphI | GGTGA | 6 cut(s) | 116, 236, 776, 1289, 1711, 2411 |
| Hpy166II | GTNNAC | 5 cut(s) | 652, 827, 1805, 2514, 2772 |
| Hpy8I | GTNNAC | 5 cut(s) | 652, 827, 1805, 2514, 2772 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 590 |
| HpyCH4IV | ACGT | 6 cut(s) | 132, 168, 823, 1807, 2254, 2774 |
| HpySE526I | ACGT | 6 cut(s) | 132, 168, 823, 1807, 2254, 2774 |
| Hsp92I | GRCGYC | 1 cut(s) | 168 |
| HspAI | GCGC | 5 cut(s) | 17, 27, 500, 619, 1382 |
| Kpn2I | TCCGGA | 1 cut(s) | 3377 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| KspAI | GTTAAC | 1 cut(s) | 2772 |
| Kzo9I | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| LguI | GCTCTTC | 2 cut(s) | 267, 927 |
| LmnI | GCTCC | 6 cut(s) | 633, 658, 1077, 1310, 2102, 2644 |
| LweI | GCATC | 9 cut(s) | 247, 289, 487, 844, 1309, 1459, 2878, 2986, 3674 |
| MaeII | ACGT | 6 cut(s) | 132, 168, 823, 1807, 2254, 2774 |
| MaeIII | GTNAC | 7 cut(s) | 104, 216, 1118, 1334, 2062, 2599, 3304 |
| MalI | GATC | 8 cut(s) | 101, 876, 1488, 1515, 2359, 2577, 3847, 3887 |
| MbiI | CCGCTC | 2 cut(s) | 1709, 2956 |
| MboI | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| MfeI | CAATTG | 1 cut(s) | 1233 |
| MflI | RGATCY | 1 cut(s) | 1486 |
| MhlI | GDGCHC | 6 cut(s) | 231, 291, 1315, 2182, 2862, 3021 |
| MlsI | TGGCCA | 2 cut(s) | 726, 968 |
| MluNI | TGGCCA | 2 cut(s) | 726, 968 |
| MlyI | GAGTC | 3 cut(s) | 2044, 2309, 3257 |
| MmeI | TCCRAC | 2 cut(s) | 2757, 2828 |
| Mox20I | TGGCCA | 2 cut(s) | 726, 968 |
| Mph1103I | ATGCAT | 4 cut(s) | 1324, 2225, 2893, 3001 |
| MroI | TCCGGA | 1 cut(s) | 3377 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2427 |
| MscI | TGGCCA | 2 cut(s) | 726, 968 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3758 |
| Msp20I | TGGCCA | 2 cut(s) | 726, 968 |
| MspA1I | CMGCKG | 1 cut(s) | 22 |
| MspCI | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| MspI | CCGG | 1 cut(s) | 3378 |
| MspR9I | CCNGG | 3 cut(s) | 1063, 1438, 2047 |
| MunI | CAATTG | 1 cut(s) | 1233 |
| Mva1269I | GAATGC | 6 cut(s) | 406, 522, 2656, 2834, 3010, 3357 |
| MvaI | CCWGG | 3 cut(s) | 1063, 1438, 2047 |
| MvnI | CGCG | 2 cut(s) | 29, 988 |
| NdeII | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 629, 1656, 2110, 2179, 2489 |
| NmuCI | GTSAC | 5 cut(s) | 104, 216, 1118, 2062, 3304 |
| NsbI | TGCGCA | 1 cut(s) | 501 |
| NsiI | ATGCAT | 4 cut(s) | 1324, 2225, 2893, 3001 |
| NspI | RCATGY | 3 cut(s) | 112, 2738, 2895 |
| NspV | TTCGAA | 1 cut(s) | 3496 |
| PaeR7I | CTCGAG | 1 cut(s) | 3020 |
| PciI | ACATGT | 1 cut(s) | 108 |
| PciSI | GCTCTTC | 2 cut(s) | 267, 927 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 165 |
| PctI | GAATGC | 6 cut(s) | 406, 522, 2656, 2834, 3010, 3357 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2427 |
| PfeI | GAWTC | 9 cut(s) | 454, 940, 1139, 1160, 1455, 1526, 2170, 2279, 3541 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3056 |
| PfoI | TCCNGGA | 1 cut(s) | 2045 |
| PleI | GAGTC | 3 cut(s) | 2044, 2308, 3256 |
| PmaCI | CACGTG | 1 cut(s) | 824 |
| PmlI | CACGTG | 1 cut(s) | 824 |
| PpsI | GAGTC | 3 cut(s) | 2044, 2308, 3256 |
| Ppu21I | YACGTR | 2 cut(s) | 133, 824 |
| PscI | ACATGT | 1 cut(s) | 108 |
| PshBI | ATTAAT | 1 cut(s) | 1269 |
| Psp124BI | GAGCTC | 2 cut(s) | 231, 291 |
| Psp1406I | AACGTT | 1 cut(s) | 2774 |
| Psp6I | CCWGG | 3 cut(s) | 1061, 1436, 2045 |
| PspCI | CACGTG | 1 cut(s) | 824 |
| PspGI | CCWGG | 3 cut(s) | 1061, 1436, 2045 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 629, 1656, 2110, 2179, 2489 |
| PspPI | GGNCC | 8 cut(s) | 139, 327, 2488, 2686, 2801, 3457, 3784, 3880 |
| PspXI | VCTCGAGB | 1 cut(s) | 3020 |
| PstI | CTGCAG | 4 cut(s) | 1011, 2733, 3271, 3938 |
| PsuI | RGATCY | 1 cut(s) | 1486 |
| PvuII | CAGCTG | 1 cut(s) | 22 |
| RsaI | GTAC | 9 cut(s) | 182, 349, 1205, 1371, 1857, 1990, 2513, 2716, 3064 |
| RsaNI | GTAC | 9 cut(s) | 181, 348, 1204, 1370, 1856, 1989, 2512, 2715, 3063 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3758 |
| SacI | GAGCTC | 2 cut(s) | 231, 291 |
| SapI | GCTCTTC | 2 cut(s) | 267, 927 |
| Sau3AI | GATC | 8 cut(s) | 99, 874, 1486, 1513, 2357, 2575, 3845, 3885 |
| Sau96I | GGNCC | 8 cut(s) | 139, 327, 2488, 2686, 2801, 3457, 3784, 3880 |
| ScaI | AGTACT | 1 cut(s) | 182 |
| SchI | GAGTC | 3 cut(s) | 2044, 2309, 3257 |
| ScrFI | CCNGG | 3 cut(s) | 1063, 1438, 2047 |
| SduI | GDGCHC | 6 cut(s) | 231, 291, 1315, 2182, 2862, 3021 |
| SfaNI | GCATC | 9 cut(s) | 247, 289, 487, 844, 1309, 1459, 2878, 2986, 3674 |
| SfcI | CTRYAG | 6 cut(s) | 1007, 1399, 2729, 3147, 3267, 3934 |
| Sfr274I | CTCGAG | 1 cut(s) | 3020 |
| SfuI | TTCGAA | 1 cut(s) | 3496 |
| SinI | GGWCC | 6 cut(s) | 2488, 2686, 2801, 3457, 3784, 3880 |
| SlaI | CTCGAG | 1 cut(s) | 3020 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3758 |
| SsiI | CCGC | 5 cut(s) | 29, 986, 1346, 1707, 2956 |
| SspI | AATATT | 2 cut(s) | 883, 1729 |
| SstI | GAGCTC | 2 cut(s) | 231, 291 |
| StyD4I | CCNGG | 3 cut(s) | 1061, 1436, 2045 |
| StyI | CCWWGG | 3 cut(s) | 640, 733, 1695 |
| TaiI | ACGT | 6 cut(s) | 135, 171, 826, 1810, 2257, 2777 |
| TatI | WGTACW | 3 cut(s) | 180, 1369, 2511 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TfiI | GAWTC | 9 cut(s) | 454, 940, 1139, 1160, 1455, 1526, 2170, 2279, 3541 |
| TscAI | CASTG | 7 cut(s) | 1297, 1523, 1636, 2521, 2890, 3076, 3340 |
| TseFI | GTSAC | 5 cut(s) | 104, 216, 1118, 2062, 3304 |
| Tsp45I | GTSAC | 5 cut(s) | 104, 216, 1118, 2062, 3304 |
| TspGWI | ACGGA | 1 cut(s) | 2407 |
| TspRI | CASTG | 7 cut(s) | 1297, 1523, 1636, 2521, 2890, 3076, 3340 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3056 |
| Vha464I | CTTAAG | 3 cut(s) | 1196, 2438, 2561 |
| VpaK11BI | GGWCC | 6 cut(s) | 2488, 2686, 2801, 3457, 3784, 3880 |
| VspI | ATTAAT | 1 cut(s) | 1269 |
| XapI | RAATTY | 6 cut(s) | 1079, 1955, 3281, 3430, 3706, 3769 |
| XbaI | TCTAGA | 1 cut(s) | 2972 |
| XceI | RCATGY | 3 cut(s) | 112, 2738, 2895 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 638, 910, 2762 |
| XhoI | CTCGAG | 1 cut(s) | 3020 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2427 |
| ZraI | GACGTC | 1 cut(s) | 169 |
| ZrmI | AGTACT | 1 cut(s) | 182 |
| Zsp2I | ATGCAT | 4 cut(s) | 1324, 2225, 2893, 3001 |