Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012067

Physical Location & Seq

Genomic Coordinates Reverse (-)

57605993 .. 57617206

Gene Structure 11214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3942 bp

ATGGCAAGGGAGGAAGCGAAGCTGAGTGAGGCGAAGGAGTCTTACCGGAGCGCGAAGGCCATCGGCAACCACGAGGAGGAGGCCCGGTGGGCCAACGTCATCGGCAACTTGTTGAAGGACAGAGGCGAGTACCTGCAGGCCCTAAAGTGGTTCGACATCGATTACCATCTCTGCACCAAGTACTTGTCCCCAAAGCACTCCCTCGCCACCTGTCAGTCCCTCGGTGAGGTCTATCTCCGTCTCGAGCGTTTCGAAGACGCCCTTGTGTATCAGAAAAAACATTTGATGCTTGCTGAGGAGGCCAATGACCTTGTTGAGCAGCAAAGGGCCAATACGCAACTAGGTCGTACCTACCACGAGATGTATCTAAAATCCCTCGACGAACATCAGTCGGTGCAGAATGCCAAAAAGTACTTCAAGTCTGCTATGAAGCTTGCACAGGCTATCAAAGAGAACCCACCTTCTAATAAATCTTTCTTTATCAAAGAATATATTGACGCGCATAACAATGTAGGATTGCTTGAACTTGATCGTGATAACCTGGAAGAGGCTGAGCAAATCTTGACTAAAGCATTAGTTATTTGCGACCAAGAAGAGGTGAATGAATATGATGATGGGCGCACCAGGCTTCATCACAATCTTGGAAAGATTTACACCGAGCTGAGGATGTGGGAAAATGCTCGGGAACACATTGAGAAGGACATTCTGATATGTAAACAAATTGGGCATTGTGAAGGAGAGGCAAAGGGGTATATCAATCTTGGTGAGTTGCATAACCGTGTTCAGAAATATCAGGAGGCAATCCTTTGTTACCAAAAAGCACTTGATCTAGCAAATTCAATGGAAGATGAGGATGCCTTGGTACGTCAAATTGAAGACAATATCAAAACTGTAAAAGAATTAGGTAAAGTAATGGATGACATGAAGAGAGAAGAGCAAAATCTCAAGAAGCTAACAAGAGACATGACCATAGCAAGAGGCACAACACAAAAGAGGAATTGTCAGCTCAAGCAAATTGCTTCTCTTGATGTTCTTATTAACAAATCAGAGACTATCTCTGCCTGGCCAAAGGTCCTTGAATTTGCGAAAAAGAAGAAGAAAGTAGCAACTGAAATTTGTGATAAAGAAAAGATTGGTGATTCACTTTTGAGCATTGGAGAATCCTACTTGAAGCTAAGGAAGTTCCAGAAAGCCCTTAAATGGTGCATGAAGAGTTTGAAAATTTACAAATCACTTGGAAACTTGGAGGGACAGGCGCTGACACAAATTAACATAGGTCATGTTTTGGACAGTGAAGGTTATTATGAAGAAGCACTCAATGCATTTACAGATAGCTACAGGCTTGCTGTTGAGGGTAAACTTTCTTATGTACAGCGTACTGCACTAGAAAATATGCACTATAGCAACTTGAACAGATTTGATGATGTTGAAGAGACCAGGAGATTGCAACTTGAAATTGACAAATTGGAGCAAAACAATGAAGGGCTTGAAACAGAAATTACGGCAGAGGATCGCTGCTCTGAATCTAGTACAGAAGGGAGTGGTGATTTCTCAGATAATATGCCTAATGCATGCTGTTCAGAAGAGATAAGAAACTCCCAATCTAGCAAATCACAATCTTTAAACCAAAAGGAAGAGTTGAATGATGATGTACCTTTGATTTCTCTCATCCGATCTACCAAAGTGTCGTCTAAGATGAAATCAGCTCATTTCGAAAACAATGAGCATGGAGTGGTGAGCCGTAAACGCATTCGTTTAGTCCTGTCTGATGATGAAGACGAAATGTCTGATGAGGCAGAAAGCCCAAAAGTCAGGCATAATAAAATCCCATTAAATGTAGCTACATCTAGTGAAGTTAAGACTAGAAGTAATACAGCCAGTCCTACTACTAAATTTCAGGATGTCTCAGCCTTCACCTCAAATTGTGCCACAAGATCTGATCCTCCTGTTAATACTGAAGAAAGCTCTAGTTCATGCAAATCCAGGACTCTTAATATGGCCACTCCAGAAGGCAAATCTTTTAGAGCTTCAAGTTCTGGTGAAGGTTTTAATGCTAGTGGCTCTAAATGTGATGTCAGTGTCTCTGGAAATATATTGCATAAAAATGACGCTGCACAATTTATGTTGCTTACTTCGGATGATAAACATAATCAATGTATAACTTTTGAAATCGATGAAGACATAATACAGGGCTCATTCTTGGCTTCTGATAATTTAAGCATTGAGTCAGTGAAGGTTCAACTGGCATGCTTATACTACTTGCAACTTCCTATGGAGAGAAAACTCGAGGGGCTAGTTCCAATAATTCAGAATGTAAAATGTGGTGAAAAAGTTATTGAATCCCTCGAAACAATCAAAACATTTCGGGGGCATATGGGAAAAATTGTGGTTGAAGCTGTCATTGATGGATGGGTCCAAAAGCGCTTGATAAAACTGTACACCGATCACTGCTACAAGGTATCTGAGACACCCAACATGAAGTTGCTAAAGAAACTATATGATCTGGAGGTTTCAGACGATGAAGTTACTGTTTCTGAATGTGAATTGCAAGATTTATCAATAACTCCACTGTTGAATGCCCTCCATGCCCAGAAAACATTTGCAATGCTAGACCTTTCCCACAACTTGTTAGGAAATGGTACTATGGAGAAACTCCAGCAAGTACTCACATCATCAGGCCAAAAATATGGTGGCTTAACGTTGGATCTGCATTGCAACAGCTTTGGTCCAACTGCTTTGTTCCAGATTTGTGAGTGCCCTCTGCTATTTACTCGATTGGAAGTGCTTAATATCTCAGGAAATCGTCTCACTGATGCATGCGCATCTTACCTTTCAACTATCTTGGAGAATTGCAAGGCCCTTTGCAGTTTGAGTATAGAGCGATGCTCCATCACATCTAGAACTATTCAAAAGGTTGCTGATGCGTTGAGTGCTGAATCTGTCCTTGAGCAACTTTGTATAGGATATAACAAGCCTATTTCTGGAAGTGCCATTACTAATTTACTCGTCAAACTTGGCACTCTGAAAAGATTTTCAAAATTAAATATGAATGGCTTGAAGCTGAGCAAGCCTGTGGTTGATAGTCTTTGCCAGCTTGCTAAACGCTTGTCCTTGTCAGTACTAATGCTTGGGGAAACTGGTATCGGACTTGACGGAGCATCGTTAGTAACTGAGTCATTGTTCCATGAAATAGAAGAGTTTGTTAAACTTGACTTATCATATTGCGGAGTGACATATAATTATGCTGTCAAACTAAGCACTAATTCTTCTATGGTTTGTGGCATTCTTGAGCTGAGCCTTTCAGGAAATCCTATTATGCAAGAGGGTAGCAATGCATTATCATCAATGCTTTTGAATTCTCAATGTTGTCTGAAAGTTTTGGTCCTTCAAAAGTGCCAGCTTGGGATCTCTGGCGTTCTGCAAATTATCCAGGCATTATCAGGTAATGCTTTTCTTGAAGAGCTCAATCTCGCTGAAAATGCAGATATTGGTAAAGAGTACTCTGCACCATATGATGTGGCAGAAAAAGGGAGTGTTGGACTCTCGCAGCCAAACCTCAATATGCTTGAATCTTCTCCATTGGTATCTGTGCTCAAAGATGTTAGCCAGCTTGAAGTCGCTGATAGTGAAGATGATGAAGTTGGGGTTGAAGCTGCTGCATCTGCACGCAACGAGAGCTGTTCAAGCTCATTTCAAAGAAATTCCTCATCCACCGAGTGCCAGTTTCTTGAAGAGTTTTCAACTGCCATTGATATGGCAAAGAATCTGCGGTTCCTGGACCTTAGCAAAAATGGTTTCTCCCCACAATGTGCAGAGATACTGTATTCGTCATGGTCAAGATCAAGATCTGTTTCAGCTCGGAGGCATATCAAGGACAAGACCATCCACTTCTTTGTGGAAGGAATGATGTGTTGTGTAAAACCCTGCTGCAGGAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_2 TPR_7 TPR_8

Protein Analysis

1313

Amino Acids

146.93

Weight (kDa)

5.49

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	166 - 232	2.1e-06	Tetratricopeptide repeat
TPR_12	PF13424	209 - 279	4.3e-09	Tetratricopeptide repeat
TPR_1	PF00515	248 - 277	7.8e-06	Tetratricopeptide repeat
TPR_12	PF13424	382 - 449	3.8e-08	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18730
fragaria_vesca	FvH4_1g23980 FvH4_1g23980 FvH4_1g23980
malus_domestica	MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1
prunus_persica	Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1
pyrus_communis	pycom09g17130
rosa_chinensis	RchiOBHm_Chr2g0120111
rosa_laevigata	RLG00000018521
rosa_multiflora	Rmu_sc0010863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123720
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283400 Rh2BG294700 Rh2DG308400
rosa_wichuraiana	Rw2G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2821
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	2 cut(s)	53, 500
AciI	CCGC	2 cut(s)	3225, 3769
AclI	AACGTT	1 cut(s)	2699
AclWI	GGATC	4 cut(s)	1518, 1934, 2712, 3413
AcoI	YGGCCR	2 cut(s)	1064, 1998
AcsI	RAATTY	7 cut(s)	835, 1079, 1113, 1221, 1892, 3355, 3700
AcuI	CTGAAG	1 cut(s)	1977
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	2 cut(s)	3717, 3809
AfeI	AGCGCT	1 cut(s)	2423
AfiI	CCNNNNNNNGG	9 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981, 3930
AhdI	GACNNNNNGTC	1 cut(s)	1783
AjnI	CCWGG	7 cut(s)	540, 623, 1061, 1436, 1982, 3429, 3774
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw21I	GWGCWC	2 cut(s)	3465, 3594
Alw26I	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
AlwI	GGATC	4 cut(s)	1518, 1934, 2712, 3413
AlwNI	CAGNNNCTG	1 cut(s)	1258
Ama87I	CYCGRG	3 cut(s)	242, 681, 2285
Aor51HI	AGCGCT	1 cut(s)	2423
ApeKI	GCWGC	7 cut(s)	319, 1515, 2111, 3547, 3653, 3656, 3927
ApoI	RAATTY	7 cut(s)	835, 1079, 1113, 1221, 1892, 3355, 3700
AspLEI	GCGC	6 cut(s)	53, 502, 621, 1258, 2424, 2822
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	9 cut(s)	236, 610, 776, 1148, 1556, 1747, 1906, 2051, 2336
AsuII	TTCGAA	2 cut(s)	252, 1713
AvaI	CYCGRG	3 cut(s)	242, 681, 2285
AvaII	GGWCC	5 cut(s)	1072, 2413, 2726, 3382, 3778
BaeGI	GKGCMC	1 cut(s)	2759
BalI	TGGCCA	2 cut(s)	1066, 2000
BanII	GRGCYC	2 cut(s)	2195, 3465
BarI	GAAGNNNNNNTAC	6 cut(s)	26, 58, 2169, 2201, 2977, 3009
BauI	CACGAG	2 cut(s)	71, 356
BbsI	GAAGAC	4 cut(s)	261, 882, 1782, 2184
Bbv12I	GWGCWC	2 cut(s)	3465, 3594
BbvCI	CCTCAGC	2 cut(s)	294, 662
BbvI	GCAGC	7 cut(s)	331, 1502, 2098, 3559, 3640, 3643, 3914
BccI	CCATC	7 cut(s)	68, 174, 608, 2399, 2403, 2897, 3890
BceAI	ACGGC	2 cut(s)	1518, 1725
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	7 cut(s)	542, 625, 1063, 1438, 1984, 3431, 3776
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BfmI	CTRYAG	4 cut(s)	134, 1336, 1399, 3928
BfoI	RGCGCY	2 cut(s)	1259, 2425
BfuAI	ACCTGC	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	2 cut(s)	1934, 3845
BisI	GCNGC	7 cut(s)	320, 1516, 2112, 3548, 3654, 3657, 3928
BlpI	GCTNAGC	3 cut(s)	552, 3062, 3293
BlsI	GCNGC	7 cut(s)	321, 1517, 2113, 3549, 3655, 3658, 3929
BmcAI	AGTACT	5 cut(s)	182, 413, 2664, 3120, 3500
Bme1390I	CCNGG	8 cut(s)	85, 542, 625, 1063, 1438, 1984, 3431, 3776
Bme18I	GGWCC	5 cut(s)	1072, 2413, 2726, 3382, 3778
BmeRI	GACNNNNNGTC	1 cut(s)	1783
BmeT110I	CYCGRG	3 cut(s)	242, 681, 2285
BmiI	GGNNCC	2 cut(s)	2414, 3773
BmrFI	CCNGG	8 cut(s)	85, 542, 625, 1063, 1438, 1984, 3431, 3776
BmsI	GCATC	8 cut(s)	276, 844, 2803, 2831, 2873, 2911, 3167, 3668
BpiI	GAAGAC	4 cut(s)	261, 882, 1782, 2184
BplI	GAGNNNNNCTC	4 cut(s)	1040, 1072, 2870, 2902
BpmI	CTGGAG	3 cut(s)	1989, 2525, 2639
Bpu10I	CCTNAGC	4 cut(s)	294, 662, 1175, 3782
Bpu1102I	GCTNAGC	3 cut(s)	552, 3062, 3293
Bpu14I	TTCGAA	2 cut(s)	252, 1713
BpuEI	CTTGAG	4 cut(s)	929, 992, 2966, 3308
BpuMI	CCSGG	1 cut(s)	85
Bsa29I	ATCGAT	2 cut(s)	159, 2172
BsaBI	GATNNNNATC	2 cut(s)	165, 3844
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	1427
BsaJI	CCNNGG	2 cut(s)	220, 858
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	9 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981, 3930
Bse1I	ACTGG	4 cut(s)	1878, 2247, 3142, 3721
Bse3DI	GCAATG	3 cut(s)	2610, 2710, 3337
Bse8I	GATNNNNATC	2 cut(s)	165, 3844
BseBI	CCWGG	7 cut(s)	542, 625, 1063, 1438, 1984, 3431, 3776
BseCI	ATCGAT	2 cut(s)	159, 2172
BseDI	CCNNGG	2 cut(s)	220, 858
BseGI	GGATG	9 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414, 3707, 3882
BseJI	GATNNNNATC	2 cut(s)	165, 3844
BseLI	CCNNNNNNNGG	9 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981, 3930
BseMI	GCAATG	3 cut(s)	2610, 2710, 3337
BseNI	ACTGG	4 cut(s)	1878, 2247, 3142, 3721
BseRI	GAGGAG	3 cut(s)	89, 92, 311
BseSI	GKGCMC	1 cut(s)	2759
BseXI	GCAGC	7 cut(s)	331, 1502, 2098, 3559, 3640, 3643, 3914
BsgI	GTGCAG	7 cut(s)	157, 416, 1365, 2097, 3489, 3648, 3831
Bsh1236I	CGCG	2 cut(s)	53, 500
BshVI	ATCGAT	2 cut(s)	159, 2172
BsiHKAI	GWGCWC	2 cut(s)	3465, 3594
BsiHKCI	CYCGRG	3 cut(s)	242, 681, 2285
BsiSI	CCGG	2 cut(s)	46, 85
BslFI	GGGAC	3 cut(s)	172, 202, 1263
BslI	CCNNNNNNNGG	9 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981, 3930
BsmAI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BsmBI	CGTCTC	2 cut(s)	245, 2810
BsmFI	GGGAC	3 cut(s)	172, 202, 1263
BsmI	GAATGC	4 cut(s)	406, 1749, 2581, 3282
Bso31I	GGTCTC	1 cut(s)	1427
BsoBI	CYCGRG	3 cut(s)	242, 681, 2285
Bsp119I	TTCGAA	2 cut(s)	252, 1713
Bsp1286I	GDGCHC	4 cut(s)	2195, 2759, 3465, 3594
Bsp1407I	TGTACA	2 cut(s)	1369, 2436
Bsp1720I	GCTNAGC	3 cut(s)	552, 3062, 3293
BspACI	CCGC	2 cut(s)	3225, 3769
BspDI	ATCGAT	2 cut(s)	159, 2172
BspFNI	CGCG	2 cut(s)	53, 500
BspLI	GGNNCC	2 cut(s)	2414, 3773
BspMAI	CTGCAG	2 cut(s)	138, 3932
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	4 cut(s)	1518, 1934, 2712, 3413
BspQI	GCTCTTC	2 cut(s)	927, 3453
BspT104I	TTCGAA	2 cut(s)	252, 1713
BspTNI	GGTCTC	1 cut(s)	1427
BsrDI	GCAATG	3 cut(s)	2610, 2710, 3337
BsrGI	TGTACA	2 cut(s)	1369, 2436
BsrI	ACTGG	4 cut(s)	1878, 2247, 3142, 3721
BssECI	CCNNGG	2 cut(s)	220, 858
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	2 cut(s)	71, 356
BssT1I	CCWWGG	1 cut(s)	858
Bst2BI	CACGAG	2 cut(s)	71, 356
Bst2UI	CCWGG	7 cut(s)	542, 625, 1063, 1438, 1984, 3431, 3776
Bst4CI	ACNGT	7 cut(s)	779, 892, 1292, 2436, 2530, 2571, 3822
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	1319
BstAUI	TGTACA	2 cut(s)	1369, 2436
BstBI	TTCGAA	2 cut(s)	252, 1713
BstENI	CCTNNNNNAGG	3 cut(s)	224, 545, 3928
BstF5I	GGATG	9 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414, 3707, 3882
BstFNI	CGCG	2 cut(s)	53, 500
BstH2I	RGCGCY	2 cut(s)	1259, 2425
BstHHI	GCGC	6 cut(s)	53, 502, 621, 1258, 2424, 2822
BstMAI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BstNI	CCWGG	7 cut(s)	542, 625, 1063, 1438, 1984, 3431, 3776
BstNSI	RCATGY	3 cut(s)	1575, 2250, 2820
BstSCI	CCNGG	8 cut(s)	83, 540, 623, 1061, 1436, 1982, 3429, 3774
BstSFI	CTRYAG	4 cut(s)	134, 1336, 1399, 3928
BstSLI	GKGCMC	1 cut(s)	2759
BstUI	CGCG	2 cut(s)	53, 500
BstV1I	GCAGC	7 cut(s)	331, 1502, 2098, 3559, 3640, 3643, 3914
BstV2I	GAAGAC	4 cut(s)	261, 882, 1782, 2184
BstX2I	RGATCY	4 cut(s)	1934, 2704, 3405, 3845
BstXI	CCANNNNNNTGG	2 cut(s)	2687, 3754
BstYI	RGATCY	4 cut(s)	1934, 2704, 3405, 3845
Bsu15I	ATCGAT	2 cut(s)	159, 2172
BsuTUI	ATCGAT	2 cut(s)	159, 2172
BtgZI	GCGATG	1 cut(s)	2896
BtsCI	GGATG	9 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414, 3707, 3882
BtsI	GCAGTG	1 cut(s)	2446
BtsIMutI	CAGTG	6 cut(s)	1297, 2083, 2235, 2446, 2567, 2808
BveI	ACCTGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	1258
CfoI	GCGC	6 cut(s)	53, 502, 621, 1258, 2424, 2822
ClaI	ATCGAT	2 cut(s)	159, 2172
CseI	GACGC	3 cut(s)	266, 506, 2117
DraI	TTTAAA	1 cut(s)	1623
DraIII	CACNNNGTG	2 cut(s)	3717, 3809
DriI	GACNNNNNGTC	1 cut(s)	1783
EaeI	YGGCCR	2 cut(s)	1064, 1998
Eam1105I	GACNNNNNGTC	1 cut(s)	1783
Ecl136II	GAGCTC	1 cut(s)	3463
Eco130I	CCWWGG	1 cut(s)	858
Eco24I	GRGCYC	2 cut(s)	2195, 3465
Eco31I	GGTCTC	1 cut(s)	1427
Eco47I	GGWCC	5 cut(s)	1072, 2413, 2726, 3382, 3778
Eco47III	AGCGCT	1 cut(s)	2423
Eco53kI	GAGCTC	1 cut(s)	3463
Eco57I	CTGAAG	1 cut(s)	1977
Eco88I	CYCGRG	3 cut(s)	242, 681, 2285
EcoICRI	GAGCTC	1 cut(s)	3463
EcoNI	CCTNNNNNAGG	3 cut(s)	224, 545, 3928
EcoO109I	RGGNCCY	3 cut(s)	139, 1072, 2857
EcoRI	GAATTC	1 cut(s)	3355
EcoRII	CCWGG	7 cut(s)	540, 623, 1061, 1436, 1982, 3429, 3774
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	4 cut(s)	1324, 1573, 2818, 3337
EcoT38I	GRGCYC	2 cut(s)	2195, 3465
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	2 cut(s)	245, 2810
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	3 cut(s)	172, 202, 1263
FauNDI	CATATG	2 cut(s)	2373, 3511
Fnu4HI	GCNGC	7 cut(s)	320, 1516, 2112, 3548, 3654, 3657, 3928
FokI	GGATG	9 cut(s)	679, 866, 929, 1655, 1913, 2150, 2421, 3694, 3869
FriOI	GRGCYC	2 cut(s)	2195, 3465
Fsp4HI	GCNGC	7 cut(s)	320, 1516, 2112, 3548, 3654, 3657, 3928
FspAI	RTGCGCAY	1 cut(s)	2821
FspI	TGCGCA	1 cut(s)	2821
GlaI	GCGC	6 cut(s)	52, 501, 620, 1257, 2423, 2821
GluI	GCNGC	7 cut(s)	320, 1516, 2112, 3548, 3654, 3657, 3928
GsuI	CTGGAG	3 cut(s)	1989, 2525, 2639
HaeII	RGCGCY	2 cut(s)	1259, 2425
HapII	CCGG	2 cut(s)	46, 85
HgaI	GACGC	3 cut(s)	266, 506, 2117
HhaI	GCGC	6 cut(s)	53, 502, 621, 1258, 2424, 2822
Hin1I	GRCGYC	1 cut(s)	258
Hin6I	GCGC	6 cut(s)	51, 500, 619, 1256, 2422, 2820
HinP1I	GCGC	6 cut(s)	51, 500, 619, 1256, 2422, 2820
HindIII	AAGCTT	1 cut(s)	431
HpaII	CCGG	2 cut(s)	46, 85
HphI	GGTGA	9 cut(s)	236, 610, 776, 1148, 1556, 1747, 1906, 2051, 2336
Hpy166II	GTNNAC	4 cut(s)	716, 1358, 1745, 2439
Hpy8I	GTNNAC	4 cut(s)	716, 1358, 1745, 2439
Hpy99I	CGWCG	1 cut(s)	383
HpyCH4III	ACNGT	7 cut(s)	779, 892, 1292, 2436, 2530, 2571, 3822
HpyCH4IV	ACGT	3 cut(s)	96, 865, 2699
HpySE526I	ACGT	3 cut(s)	96, 865, 2699
Hsp92I	GRCGYC	1 cut(s)	258
HspAI	GCGC	6 cut(s)	51, 500, 619, 1256, 2422, 2820
LguI	GCTCTTC	2 cut(s)	927, 3453
LmnI	GCTCC	4 cut(s)	48, 1468, 2891, 3155
Lsp1109I	GCAGC	7 cut(s)	331, 1502, 2098, 3559, 3640, 3643, 3914
LweI	GCATC	8 cut(s)	276, 844, 2803, 2831, 2873, 2911, 3167, 3668
MaeII	ACGT	3 cut(s)	96, 865, 2699
MaeIII	GTNAC	4 cut(s)	809, 2524, 3166, 3229
MflI	RGATCY	4 cut(s)	1934, 2704, 3405, 3845
MhlI	GDGCHC	4 cut(s)	2195, 2759, 3465, 3594
MlsI	TGGCCA	2 cut(s)	1066, 2000
MluNI	TGGCCA	2 cut(s)	1066, 2000
MlyI	GAGTC	5 cut(s)	47, 1981, 2234, 3182, 3534
MmeI	TCCRAC	3 cut(s)	2682, 2753, 3517
Mox20I	TGGCCA	2 cut(s)	1066, 2000
Mph1103I	ATGCAT	4 cut(s)	1324, 1573, 2818, 3337
MscI	TGGCCA	2 cut(s)	1066, 2000
MslI	CAYNNNNRTG	4 cut(s)	507, 777, 2103, 3752
Msp20I	TGGCCA	2 cut(s)	1066, 2000
MspI	CCGG	2 cut(s)	46, 85
MspR9I	CCNGG	8 cut(s)	85, 542, 625, 1063, 1438, 1984, 3431, 3776
Mva1269I	GAATGC	4 cut(s)	406, 1749, 2581, 3282
MvaI	CCWGG	7 cut(s)	542, 625, 1063, 1438, 1984, 3431, 3776
MvnI	CGCG	2 cut(s)	53, 500
NciI	CCSGG	1 cut(s)	85
NdeI	CATATG	2 cut(s)	2373, 3511
NlaIV	GGNNCC	2 cut(s)	2414, 3773
NmuCI	GTSAC	1 cut(s)	3229
NsbI	TGCGCA	1 cut(s)	2821
NsiI	ATGCAT	4 cut(s)	1324, 1573, 2818, 3337
NspI	RCATGY	3 cut(s)	1575, 2250, 2820
NspV	TTCGAA	2 cut(s)	252, 1713
PaeI	GCATGC	3 cut(s)	1575, 2250, 2820
PaeR7I	CTCGAG	2 cut(s)	242, 2285
PciSI	GCTCTTC	2 cut(s)	927, 3453
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 249
PctI	GAATGC	4 cut(s)	406, 1749, 2581, 3282
PfeI	GAWTC	7 cut(s)	1139, 1160, 1523, 2339, 2936, 3569, 3763
PfoI	TCCNGGA	2 cut(s)	1982, 3774
PkrI	GCNGC	7 cut(s)	321, 1517, 2113, 3549, 3655, 3658, 3929
PleI	GAGTC	5 cut(s)	46, 1981, 2233, 3181, 3534
PpsI	GAGTC	5 cut(s)	46, 1981, 2233, 3181, 3534
PpuMI	RGGWCCY	1 cut(s)	1072
Psp124BI	GAGCTC	1 cut(s)	3465
Psp1406I	AACGTT	1 cut(s)	2699
Psp5II	RGGWCCY	1 cut(s)	1072
Psp6I	CCWGG	7 cut(s)	540, 623, 1061, 1436, 1982, 3429, 3774
PspGI	CCWGG	7 cut(s)	540, 623, 1061, 1436, 1982, 3429, 3774
PspN4I	GGNNCC	2 cut(s)	2414, 3773
PspPPI	RGGWCCY	1 cut(s)	1072
PspXI	VCTCGAGB	1 cut(s)	2285
PstI	CTGCAG	2 cut(s)	138, 3932
PstNI	CAGNNNCTG	1 cut(s)	1258
PsuI	RGATCY	4 cut(s)	1934, 2704, 3405, 3845
RseI	CAYNNNNRTG	4 cut(s)	507, 777, 2103, 3752
SacI	GAGCTC	1 cut(s)	3465
SapI	GCTCTTC	2 cut(s)	927, 3453
SatI	GCNGC	7 cut(s)	320, 1516, 2112, 3548, 3654, 3657, 3928
SbfI	CCTGCAGG	1 cut(s)	138
ScaI	AGTACT	5 cut(s)	182, 413, 2664, 3120, 3500
SchI	GAGTC	5 cut(s)	47, 1981, 2234, 3182, 3534
ScrFI	CCNGG	8 cut(s)	85, 542, 625, 1063, 1438, 1984, 3431, 3776
SdaI	CCTGCAGG	1 cut(s)	138
SduI	GDGCHC	4 cut(s)	2195, 2759, 3465, 3594
SfaNI	GCATC	8 cut(s)	276, 844, 2803, 2831, 2873, 2911, 3167, 3668
SfcI	CTRYAG	4 cut(s)	134, 1336, 1399, 3928
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
Sfr274I	CTCGAG	2 cut(s)	242, 2285
SfuI	TTCGAA	2 cut(s)	252, 1713
SinI	GGWCC	5 cut(s)	1072, 2413, 2726, 3382, 3778
SlaI	CTCGAG	2 cut(s)	242, 2285
SmiMI	CAYNNNNRTG	4 cut(s)	507, 777, 2103, 3752
SmlI	CTYRAG	6 cut(s)	242, 944, 1007, 2285, 2945, 3287
SmoI	CTYRAG	6 cut(s)	242, 944, 1007, 2285, 2945, 3287
SphI	GCATGC	3 cut(s)	1575, 2250, 2820
Sse8387I	CCTGCAGG	1 cut(s)	138
SsiI	CCGC	2 cut(s)	3225, 3769
SstI	GAGCTC	1 cut(s)	3465
StyD4I	CCNGG	8 cut(s)	83, 540, 623, 1061, 1436, 1982, 3429, 3774
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	7 cut(s)	779, 892, 1292, 2436, 2530, 2571, 3822
TaiI	ACGT	3 cut(s)	99, 868, 2702
TatI	WGTACW	8 cut(s)	180, 411, 1369, 1529, 2436, 2662, 3118, 3498
TfiI	GAWTC	7 cut(s)	1139, 1160, 1523, 2339, 2936, 3569, 3763
TscAI	CASTG	6 cut(s)	1297, 2083, 2235, 2453, 2574, 2815
TseFI	GTSAC	1 cut(s)	3229
TseI	GCWGC	7 cut(s)	319, 1515, 2111, 3547, 3653, 3656, 3927
Tsp45I	GTSAC	1 cut(s)	3229
TspGWI	ACGGA	2 cut(s)	227, 3168
TspRI	CASTG	6 cut(s)	1297, 2083, 2235, 2453, 2574, 2815
VpaK11BI	GGWCC	5 cut(s)	1072, 2413, 2726, 3382, 3778
XagI	CCTNNNNNAGG	3 cut(s)	224, 545, 3928
XapI	RAATTY	7 cut(s)	835, 1079, 1113, 1221, 1892, 3355, 3700
XbaI	TCTAGA	1 cut(s)	2897
XceI	RCATGY	3 cut(s)	1575, 2250, 2820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2687
XhoI	CTCGAG	2 cut(s)	242, 2285
ZrmI	AGTACT	5 cut(s)	182, 413, 2664, 3120, 3500
Zsp2I	ATGCAT	4 cut(s)	1324, 1573, 2818, 3337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.