Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18730 |
| fragaria_vesca | FvH4_1g23980 FvH4_1g23980 FvH4_1g23980 |
| malus_domestica | MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1 |
| prunus_persica | Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1 |
| pyrus_communis | pycom09g17130 |
| rosa_chinensis | RchiOBHm_Chr2g0120111 |
| rosa_laevigata | RLG00000018521 |
| rosa_multiflora | Rmu_sc0010863.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00123720 |
| rosa_rugosa | Rorug02G0226800 |
| rosa_samantha | Rh2AG283400 Rh2BG294700 Rh2DG308400 |
| rosa_wichuraiana | Rw2G022700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 59, 2039 |
| AatII | GACGTC | 1 cut(s) | 3197 |
| Acc65I | GGTACC | 1 cut(s) | 1750 |
| AccB1I | GGYRCC | 2 cut(s) | 1750, 1883 |
| AccI | GTMKAC | 2 cut(s) | 2861, 3680 |
| AciI | CCGC | 2 cut(s) | 29, 315 |
| AclI | AACGTT | 1 cut(s) | 543 |
| AclWI | GGATC | 4 cut(s) | 1416, 1895, 1986, 2676 |
| AcoI | YGGCCR | 2 cut(s) | 861, 959 |
| AcsI | RAATTY | 8 cut(s) | 413, 974, 1654, 1790, 2959, 3375, 3605, 3703 |
| AcuI | CTGAAG | 5 cut(s) | 839, 1464, 1593, 3038, 3138 |
| AcvI | CACGTG | 1 cut(s) | 884 |
| AcyI | GRCGYC | 1 cut(s) | 3194 |
| AdeI | CACNNNGTG | 1 cut(s) | 884 |
| AfaI | GTAC | 7 cut(s) | 23, 74, 241, 647, 1752, 3461, 3640 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 39, 1095, 1261, 1610, 2536 |
| AflII | CTTAAG | 2 cut(s) | 2327, 2450 |
| AflIII | ACRYGT | 1 cut(s) | 1702 |
| AjiI | CACGTC | 1 cut(s) | 2859 |
| AjnI | CCWGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 290, 322, 1937, 1969 |
| Alw21I | GWGCWC | 3 cut(s) | 123, 1210, 2751 |
| AlwI | GGATC | 4 cut(s) | 1416, 1895, 1986, 2676 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3715 |
| Ama87I | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| AoxI | GGCC | 6 cut(s) | 30, 219, 861, 954, 959, 3043 |
| ApoI | RAATTY | 8 cut(s) | 413, 974, 1654, 1790, 2959, 3375, 3605, 3703 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 76, 108, 1643, 1675, 1754, 1786 |
| Asp718I | GGTACC | 1 cut(s) | 1750 |
| AspA2I | CCTAGG | 1 cut(s) | 3653 |
| AspLEI | GCGC | 1 cut(s) | 516 |
| AspS9I | GGNCC | 4 cut(s) | 31, 219, 3718, 3814 |
| AsuHPI | GGTGA | 5 cut(s) | 671, 1184, 1606, 2042, 2300 |
| AsuII | TTCGAA | 1 cut(s) | 3382 |
| AvaI | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| AvaII | GGWCC | 2 cut(s) | 3718, 3814 |
| AvrII | CCTAGG | 1 cut(s) | 3653 |
| BalI | TGGCCA | 2 cut(s) | 863, 961 |
| BanI | GGYRCC | 2 cut(s) | 1750, 1883 |
| BanII | GRGCYC | 1 cut(s) | 123 |
| BbrPI | CACGTG | 1 cut(s) | 884 |
| BbsI | GAAGAC | 2 cut(s) | 1670, 3080 |
| Bbv12I | GWGCWC | 3 cut(s) | 123, 1210, 2751 |
| BbvCI | CCTCAGC | 2 cut(s) | 186, 557 |
| BceAI | ACGGC | 2 cut(s) | 2243, 3671 |
| BciT130I | CCWGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| BclI | TGATCA | 3 cut(s) | 336, 2391, 3574 |
| BfaI | CTAG | 7 cut(s) | 233, 1211, 1280, 1497, 1926, 2573, 3654 |
| BfmI | CTRYAG | 7 cut(s) | 786, 902, 1231, 1294, 2618, 3033, 3868 |
| BfrI | CTTAAG | 2 cut(s) | 2327, 2450 |
| BglII | AGATCT | 1 cut(s) | 1381 |
| BlnI | CCTAGG | 1 cut(s) | 3653 |
| BmcAI | AGTACT | 3 cut(s) | 74, 3461, 3640 |
| Bme1390I | CCNGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| Bme18I | GGWCC | 2 cut(s) | 3718, 3814 |
| BmeT110I | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| BmgBI | CACGTC | 1 cut(s) | 2859 |
| BmgT120I | GGNCC | 4 cut(s) | 31, 219, 3718, 3814 |
| BmiI | GGNNCC | 5 cut(s) | 44, 524, 1752, 1885, 3659 |
| BmrFI | CCNGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| BmsI | GCATC | 8 cut(s) | 376, 496, 739, 1204, 2059, 2530, 2795, 2875 |
| BpiI | GAAGAC | 2 cut(s) | 1670, 3080 |
| BpmI | CTGGAG | 2 cut(s) | 20, 3724 |
| Bpu10I | CCTNAGC | 3 cut(s) | 186, 557, 3722 |
| Bpu14I | TTCGAA | 1 cut(s) | 3382 |
| BpuEI | CTTGAG | 3 cut(s) | 1574, 2854, 2930 |
| Bsa29I | ATCGAT | 2 cut(s) | 423, 768 |
| BsaAI | YACGTR | 2 cut(s) | 25, 884 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2785 |
| BsaHI | GRCGYC | 1 cut(s) | 3194 |
| BsaI | GGTCTC | 2 cut(s) | 2133, 2479 |
| BsaJI | CCNNGG | 6 cut(s) | 112, 535, 2307, 2349, 3629, 3653 |
| BsaWI | WCCGGW | 1 cut(s) | 3514 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 39, 1095, 1261, 1610, 2536 |
| Bse1I | ACTGG | 9 cut(s) | 37, 729, 864, 1524, 1836, 2037, 3103, 3661, 3720 |
| Bse3DI | GCAATG | 3 cut(s) | 277, 700, 3298 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2785 |
| BseBI | CCWGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| BseCI | ATCGAT | 2 cut(s) | 423, 768 |
| BseDI | CCNNGG | 6 cut(s) | 112, 535, 2307, 2349, 3629, 3653 |
| BseJI | GATNNNNATC | 1 cut(s) | 2785 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 39, 1095, 1261, 1610, 2536 |
| BseMI | GCAATG | 3 cut(s) | 277, 700, 3298 |
| BseMII | CTCAG | 7 cut(s) | 177, 548, 772, 1878, 2490, 2720, 3123 |
| BseNI | ACTGG | 9 cut(s) | 37, 729, 864, 1524, 1836, 2037, 3103, 3661, 3720 |
| BseRI | GAGGAG | 2 cut(s) | 503, 3296 |
| BseYI | CCCAGC | 2 cut(s) | 509, 2654 |
| BsgI | GTGCAG | 4 cut(s) | 1286, 3471, 3582, 3604 |
| BshFI | GGCC | 6 cut(s) | 32, 221, 863, 956, 961, 3045 |
| BshNI | GGYRCC | 2 cut(s) | 1750, 1883 |
| BshVI | ATCGAT | 2 cut(s) | 423, 768 |
| BsiHKAI | GWGCWC | 3 cut(s) | 123, 1210, 2751 |
| BsiHKCI | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| BsiSI | CCGG | 1 cut(s) | 3515 |
| BslFI | GGGAC | 3 cut(s) | 94, 3328, 3379 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 39, 1095, 1261, 1610, 2536 |
| BsmFI | GGGAC | 3 cut(s) | 94, 3328, 3379 |
| BsmI | GAATGC | 6 cut(s) | 298, 411, 2574, 2723, 2899, 3754 |
| BsnI | GGCC | 6 cut(s) | 32, 221, 863, 956, 961, 3045 |
| Bso31I | GGTCTC | 2 cut(s) | 2133, 2479 |
| BsoBI | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| Bsp119I | TTCGAA | 1 cut(s) | 3382 |
| Bsp1286I | GDGCHC | 3 cut(s) | 123, 1210, 2751 |
| BspACI | CCGC | 2 cut(s) | 29, 315 |
| BspANI | GGCC | 6 cut(s) | 32, 221, 863, 956, 961, 3045 |
| BspCNI | CTCAG | 7 cut(s) | 178, 549, 771, 1877, 2489, 2719, 3124 |
| BspDI | ATCGAT | 2 cut(s) | 423, 768 |
| BspHI | TCATGA | 1 cut(s) | 2955 |
| BspLI | GGNNCC | 5 cut(s) | 44, 524, 1752, 1885, 3659 |
| BspMAI | CTGCAG | 3 cut(s) | 906, 2622, 3872 |
| BspPI | GGATC | 4 cut(s) | 1416, 1895, 1986, 2676 |
| BspQI | GCTCTTC | 2 cut(s) | 822, 3414 |
| BspT104I | TTCGAA | 1 cut(s) | 3382 |
| BspT107I | GGYRCC | 2 cut(s) | 1750, 1883 |
| BspTI | CTTAAG | 2 cut(s) | 2327, 2450 |
| BspTNI | GGTCTC | 2 cut(s) | 2133, 2479 |
| BsrDI | GCAATG | 3 cut(s) | 277, 700, 3298 |
| BsrI | ACTGG | 9 cut(s) | 37, 729, 864, 1524, 1836, 2037, 3103, 3661, 3720 |
| BssECI | CCNNGG | 6 cut(s) | 112, 535, 2307, 2349, 3629, 3653 |
| BssNI | GRCGYC | 1 cut(s) | 3194 |
| BssT1I | CCWWGG | 3 cut(s) | 535, 2349, 3653 |
| Bst2UI | CCWGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| Bst4CI | ACNGT | 6 cut(s) | 787, 1187, 1515, 1687, 3030, 3459 |
| Bst6I | CTCTTC | 9 cut(s) | 5, 435, 480, 822, 1100, 1218, 1527, 1811, 3414 |
| BstACI | GRCGYC | 1 cut(s) | 3194 |
| BstAFI | CTTAAG | 2 cut(s) | 2327, 2450 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1214, 2844, 2894 |
| BstBAI | YACGTR | 2 cut(s) | 25, 884 |
| BstBI | TTCGAA | 1 cut(s) | 3382 |
| BstDSI | CCRYGG | 1 cut(s) | 3629 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| BstHHI | GCGC | 1 cut(s) | 516 |
| BstNI | CCWGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| BstNSI | RCATGY | 2 cut(s) | 1473, 2214 |
| BstSCI | CCNGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| BstSFI | CTRYAG | 7 cut(s) | 786, 902, 1231, 1294, 2618, 3033, 3868 |
| BstV2I | GAAGAC | 2 cut(s) | 1670, 3080 |
| BstX2I | RGATCY | 3 cut(s) | 1381, 1991, 2668 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2806 |
| BstYI | RGATCY | 3 cut(s) | 1381, 1991, 2668 |
| Bsu15I | ATCGAT | 2 cut(s) | 423, 768 |
| BsuRI | GGCC | 6 cut(s) | 32, 221, 863, 956, 961, 3045 |
| BsuTUI | ATCGAT | 2 cut(s) | 423, 768 |
| BtgI | CCRYGG | 1 cut(s) | 3629 |
| BtrI | CACGTC | 1 cut(s) | 2859 |
| BtsIMutI | CAGTG | 9 cut(s) | 44, 871, 1036, 1192, 2044, 2403, 2772, 3219, 3534 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3715 |
| CciI | TCATGA | 1 cut(s) | 2955 |
| CfoI | GCGC | 1 cut(s) | 516 |
| Cfr13I | GGNCC | 4 cut(s) | 31, 219, 3718, 3814 |
| ClaI | ATCGAT | 2 cut(s) | 423, 768 |
| Csp6I | GTAC | 7 cut(s) | 22, 73, 240, 646, 1751, 3460, 3639 |
| CviQI | GTAC | 7 cut(s) | 22, 73, 240, 646, 1751, 3460, 3639 |
| DraIII | CACNNNGTG | 1 cut(s) | 884 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 59, 2039 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 59, 2039 |
| EaeI | YGGCCR | 2 cut(s) | 861, 959 |
| Eam1104I | CTCTTC | 9 cut(s) | 5, 435, 480, 822, 1100, 1218, 1527, 1811, 3414 |
| EarI | CTCTTC | 9 cut(s) | 5, 435, 480, 822, 1100, 1218, 1527, 1811, 3414 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 3 cut(s) | 535, 2349, 3653 |
| Eco24I | GRGCYC | 1 cut(s) | 123 |
| Eco31I | GGTCTC | 2 cut(s) | 2133, 2479 |
| Eco47I | GGWCC | 2 cut(s) | 3718, 3814 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 5 cut(s) | 839, 1464, 1593, 3038, 3138 |
| Eco72I | CACGTG | 1 cut(s) | 884 |
| Eco88I | CYCGRG | 3 cut(s) | 134, 576, 3781 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| EcoRI | GAATTC | 1 cut(s) | 3375 |
| EcoRII | CCWGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| EcoT14I | CCWWGG | 3 cut(s) | 535, 2349, 3653 |
| EcoT22I | ATGCAT | 4 cut(s) | 1219, 1471, 2120, 2890 |
| EcoT38I | GRGCYC | 1 cut(s) | 123 |
| ErhI | CCWWGG | 3 cut(s) | 535, 2349, 3653 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 138, 170 |
| FaqI | GGGAC | 3 cut(s) | 94, 3328, 3379 |
| FauNDI | CATATG | 1 cut(s) | 2337 |
| FbaI | TGATCA | 3 cut(s) | 336, 2391, 3574 |
| FblI | GTMKAC | 2 cut(s) | 2861, 3680 |
| FriOI | GRGCYC | 1 cut(s) | 123 |
| FspBI | CTAG | 7 cut(s) | 233, 1211, 1280, 1497, 1926, 2573, 3654 |
| GlaI | GCGC | 1 cut(s) | 515 |
| GsaI | CCCAGC | 2 cut(s) | 513, 2658 |
| GsuI | CTGGAG | 2 cut(s) | 20, 3724 |
| HaeIII | GGCC | 6 cut(s) | 32, 221, 863, 956, 961, 3045 |
| HapII | CCGG | 1 cut(s) | 3515 |
| HhaI | GCGC | 1 cut(s) | 516 |
| Hin1I | GRCGYC | 1 cut(s) | 3194 |
| Hin6I | GCGC | 1 cut(s) | 514 |
| HinP1I | GCGC | 1 cut(s) | 514 |
| HindIII | AAGCTT | 5 cut(s) | 323, 2358, 2972, 3053, 3359 |
| HpaII | CCGG | 1 cut(s) | 3515 |
| HphI | GGTGA | 5 cut(s) | 671, 1184, 1606, 2042, 2300 |
| Hpy166II | GTNNAC | 6 cut(s) | 547, 1700, 2507, 2862, 3208, 3681 |
| Hpy8I | GTNNAC | 6 cut(s) | 547, 1700, 2507, 2862, 3208, 3681 |
| Hpy99I | CGWCG | 1 cut(s) | 3199 |
| HpyAV | CCTTC | 9 cut(s) | 363, 586, 1196, 1265, 1269, 1427, 1617, 3356, 3832 |
| HpyCH4III | ACNGT | 6 cut(s) | 787, 1187, 1515, 1687, 3030, 3459 |
| HpyCH4IV | ACGT | 7 cut(s) | 24, 543, 883, 1702, 2093, 2858, 3194 |
| HpySE526I | ACGT | 7 cut(s) | 24, 543, 883, 1702, 2093, 2858, 3194 |
| Hsp92I | GRCGYC | 1 cut(s) | 3194 |
| HspAI | GCGC | 1 cut(s) | 514 |
| KpnI | GGTACC | 1 cut(s) | 1754 |
| Ksp22I | TGATCA | 3 cut(s) | 336, 2391, 3574 |
| LguI | GCTCTTC | 2 cut(s) | 822, 3414 |
| LmnI | GCTCC | 5 cut(s) | 48, 528, 972, 1205, 3657 |
| LweI | GCATC | 8 cut(s) | 376, 496, 739, 1204, 2059, 2530, 2795, 2875 |
| MaeI | CTAG | 7 cut(s) | 233, 1211, 1280, 1497, 1926, 2573, 3654 |
| MaeII | ACGT | 7 cut(s) | 24, 543, 883, 1702, 2093, 2858, 3194 |
| MaeIII | GTNAC | 7 cut(s) | 479, 1298, 1826, 1957, 2030, 2854, 3190 |
| MfeI | CAATTG | 3 cut(s) | 433, 1128, 2868 |
| MflI | RGATCY | 3 cut(s) | 1381, 1991, 2668 |
| MhlI | GDGCHC | 3 cut(s) | 123, 1210, 2751 |
| MlsI | TGGCCA | 2 cut(s) | 863, 961 |
| MluNI | TGGCCA | 2 cut(s) | 863, 961 |
| MlyI | GAGTC | 3 cut(s) | 2198, 3143, 3795 |
| MmeI | TCCRAC | 3 cut(s) | 2517, 2646, 3500 |
| Mox20I | TGGCCA | 2 cut(s) | 863, 961 |
| Mph1103I | ATGCAT | 4 cut(s) | 1219, 1471, 2120, 2890 |
| MscI | TGGCCA | 2 cut(s) | 863, 961 |
| Msp20I | TGGCCA | 2 cut(s) | 863, 961 |
| MspA1I | CMGCKG | 1 cut(s) | 3618 |
| MspCI | CTTAAG | 2 cut(s) | 2327, 2450 |
| MspI | CCGG | 1 cut(s) | 3515 |
| MspR9I | CCNGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| MunI | CAATTG | 3 cut(s) | 433, 1128, 2868 |
| Mva1269I | GAATGC | 6 cut(s) | 298, 411, 2574, 2723, 2899, 3754 |
| MvaI | CCWGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| NdeI | CATATG | 1 cut(s) | 2337 |
| NlaIV | GGNNCC | 5 cut(s) | 44, 524, 1752, 1885, 3659 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 6 cut(s) | 479, 1298, 1957, 2030, 2854, 3190 |
| NsiI | ATGCAT | 4 cut(s) | 1219, 1471, 2120, 2890 |
| NspI | RCATGY | 2 cut(s) | 1473, 2214 |
| NspV | TTCGAA | 1 cut(s) | 3382 |
| PaeI | GCATGC | 2 cut(s) | 1473, 2214 |
| PaeR7I | CTCGAG | 3 cut(s) | 134, 576, 3781 |
| PagI | TCATGA | 1 cut(s) | 2955 |
| PciSI | GCTCTTC | 2 cut(s) | 822, 3414 |
| PctI | GAATGC | 6 cut(s) | 298, 411, 2574, 2723, 2899, 3754 |
| PfoI | TCCNGGA | 1 cut(s) | 1940 |
| PleI | GAGTC | 3 cut(s) | 2197, 3142, 3794 |
| PmaCI | CACGTG | 1 cut(s) | 884 |
| PmlI | CACGTG | 1 cut(s) | 884 |
| PpsI | GAGTC | 3 cut(s) | 2197, 3142, 3794 |
| Ppu21I | YACGTR | 2 cut(s) | 25, 884 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| Psp1406I | AACGTT | 1 cut(s) | 543 |
| Psp6I | CCWGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| PspCI | CACGTG | 1 cut(s) | 884 |
| PspFI | CCCAGC | 2 cut(s) | 509, 2654 |
| PspGI | CCWGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| PspN4I | GGNNCC | 5 cut(s) | 44, 524, 1752, 1885, 3659 |
| PspPI | GGNCC | 4 cut(s) | 31, 219, 3718, 3814 |
| PspXI | VCTCGAGB | 1 cut(s) | 134 |
| PstI | CTGCAG | 3 cut(s) | 906, 2622, 3872 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3715 |
| PsuI | RGATCY | 3 cut(s) | 1381, 1991, 2668 |
| PvuII | CAGCTG | 1 cut(s) | 3618 |
| RsaI | GTAC | 7 cut(s) | 23, 74, 241, 647, 1752, 3461, 3640 |
| RsaNI | GTAC | 7 cut(s) | 22, 73, 240, 646, 1751, 3460, 3639 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SapI | GCTCTTC | 2 cut(s) | 822, 3414 |
| Sau96I | GGNCC | 4 cut(s) | 31, 219, 3718, 3814 |
| ScaI | AGTACT | 3 cut(s) | 74, 3461, 3640 |
| SchI | GAGTC | 3 cut(s) | 2198, 3143, 3795 |
| ScrFI | CCNGG | 5 cut(s) | 799, 958, 1333, 1942, 2309 |
| SduI | GDGCHC | 3 cut(s) | 123, 1210, 2751 |
| SfaNI | GCATC | 8 cut(s) | 376, 496, 739, 1204, 2059, 2530, 2795, 2875 |
| SfcI | CTRYAG | 7 cut(s) | 786, 902, 1231, 1294, 2618, 3033, 3868 |
| Sfr274I | CTCGAG | 3 cut(s) | 134, 576, 3781 |
| SfuI | TTCGAA | 1 cut(s) | 3382 |
| SinI | GGWCC | 2 cut(s) | 3718, 3814 |
| SlaI | CTCGAG | 3 cut(s) | 134, 576, 3781 |
| SmlI | CTYRAG | 8 cut(s) | 134, 576, 1589, 2327, 2450, 2833, 2909, 3781 |
| SmoI | CTYRAG | 8 cut(s) | 134, 576, 1589, 2327, 2450, 2833, 2909, 3781 |
| SphI | GCATGC | 2 cut(s) | 1473, 2214 |
| SsiI | CCGC | 2 cut(s) | 29, 315 |
| SspI | AATATT | 2 cut(s) | 778, 1642 |
| SspMI | CTAG | 7 cut(s) | 233, 1211, 1280, 1497, 1926, 2573, 3654 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyD4I | CCNGG | 5 cut(s) | 797, 956, 1331, 1940, 2307 |
| StyI | CCWWGG | 3 cut(s) | 535, 2349, 3653 |
| TaaI | ACNGT | 6 cut(s) | 787, 1187, 1515, 1687, 3030, 3459 |
| TaiI | ACGT | 7 cut(s) | 27, 546, 886, 1705, 2096, 2861, 3197 |
| TatI | WGTACW | 3 cut(s) | 72, 3459, 3638 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TscAI | CASTG | 9 cut(s) | 44, 871, 1036, 1192, 2044, 2410, 2779, 3226, 3541 |
| TseFI | GTSAC | 6 cut(s) | 479, 1298, 1957, 2030, 2854, 3190 |
| Tsp45I | GTSAC | 6 cut(s) | 479, 1298, 1957, 2030, 2854, 3190 |
| TspRI | CASTG | 9 cut(s) | 44, 871, 1036, 1192, 2044, 2410, 2779, 3226, 3541 |
| Vha464I | CTTAAG | 2 cut(s) | 2327, 2450 |
| VpaK11BI | GGWCC | 2 cut(s) | 3718, 3814 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1608 |
| XapI | RAATTY | 8 cut(s) | 413, 974, 1654, 1790, 2959, 3375, 3605, 3703 |
| XceI | RCATGY | 2 cut(s) | 1473, 2214 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 533, 805, 2651 |
| XhoI | CTCGAG | 3 cut(s) | 134, 576, 3781 |
| XmaJI | CCTAGG | 1 cut(s) | 3653 |
| XmiI | GTMKAC | 2 cut(s) | 2861, 3680 |
| XspI | CTAG | 7 cut(s) | 233, 1211, 1280, 1497, 1926, 2573, 3654 |
| ZraI | GACGTC | 1 cut(s) | 3195 |
| ZrmI | AGTACT | 3 cut(s) | 74, 3461, 3640 |
| Zsp2I | ATGCAT | 4 cut(s) | 1219, 1471, 2120, 2890 |