Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012067

Physical Location & Seq

Genomic Coordinates Forward (+)

34514265 .. 34526031

Gene Structure 11767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3354 bp

ATGGCAAGGGAGGAAGCGAAGCTGAGTGAGGCGAAGGCGTCTTACCGGAGCGCGAAGGCCATCGGCAACCACGAGGAGGAGGCCCGGTGGGCCAACGTCATCGGCAACTTGTTGAAGGACAGAGGCGAGTACCTGCAGGCCCTCAGGTGGTTCGACATCGATTACCATCTCTGCACCAAGTACTTGTCCCCCAAGCACTCCCTTGCCACCTGTCAGTCCCTCGGTGAGGTCTATCTCCGTCTCGAGCGTTTCGAAGACGCCCTTGTGTATCAGAAAAAACATTTGATGCTTGCTGAGGAGGCCAATGACCTTGTTGAGCAGCAAAGGGCCAATACGCAACTAGGTCGTACCTACCACGAGATGTATCTAAAATCCCTGGACGAACATCAGTCGGTGCAGAATGCCAAAAAGTACTTCAAGTCTGCTATGAAGCTTGCACAGGCTATCAAAGAGAACCCACCTTCTAATAAATCTTTTTTTATCAAAGAATATATTGACGCGCATAACAATGTAGGATTGCTTGAACTTGATCGTGATAACCTGGAAGAGGCTGAGAAAATCTTGACTAGAGCATTAGTTATTTGCGACCAAGAAGAGGTGAATGAATATGATGATGGGCGCACCAGGCTTCATCACAATCTTGGAAAGATTTACACCGAGCTGAGGATGTGGGAAAATGCTCGGGAACACATTGAGAAGGACATTCTGATATGTAAACAAATTGGGCATTGTGAAGGAGAGGCAAAGGGGTATATCAATCTTGGCGAGTTGCATAACCGTGTTCAGAAATATCAGGAGGCAATCCTTTGCTACCAAAAAGCACTTGATCTAGCAAATTCAATGGAAGATGAGGATGCCTTGGTACGTCAAATTGAAGACAATATCAAAACTGTAAAAGAATTAGGTAAAGTAATGGATGACATGAAGAGAGAAGAGCAAAATCTCAAGAAGCTAACAAGAGACATGGCCATAGCAAGAGGCACAACACATAAGAGGAATTGTCAGCTCAAGCAAATTGCTTCTCTTGATGTTCTTATTAACAAATCAGAGACTATCTCTGCCTGGCCAAAGGTCCTTGAATTTGCGAAAAAGAAGAAGAAAGTAGCAACTGAAATTTGTGATAAAGAAAAGATTGCTGATTCACTTTTGAGCATTGGAGAATCCTACTTGAAGCTAAGGAAGTTCCAGAAAGCCCTTAAATGGTGCATGAAGAGTTTGAAAATTTACAAATCACTTGGAAACTTGGAGGGACAGGCGTTGACACAAATTAACATAGGTCATGTTTTGGACAGTGAAGGTTATTATGAAGAAGCACTCAATGCATTTACAGATAGCTACAGGCTTGCTGTTGAGGGTAAACTTTCTTATGTACAGCGTACTGCACTAGAAAATATGCACTATAGCAACTTGAACAGATTTGATGATGTTGAAGAGACCAGGAGATTGCAACTTGAAATTGACAAATTGGAGCAAAACAATGAAGGGCTTGAAACAGAAATTACGGCAGAGGATCGCTGCTCTGAATCTAGTACAGAAGGGAGTGGTGATTTCTCAGATAATATGCCTAATGCATGCTGTCCAGAAGAGATAAGAAACTCCCAATCTAGCAAATCACAATCTTTAAACCAAAAGGAAGAGTTGAATGATGATGTACCTTTGATTTCTCTCATCCGATCTACCAAAGTGTCGTCTAAGATGAAATCAGCTCATTTCGAAAACAATGAGCTTGGAGTGGTGGGCCGTAAACGCATTCGTTTAGTCCTGTCTGATGATGAAGACGAAATGTCTGATGAGGCAGAAAGCCCAAAAGTCAGGCATAATAAAATCCCATTAAATGTCGCTACATCTAGTGAAGTTAAGACTAGAAGTAATACAGCCAGTCCTACTACTAAATTTCAGGATGTCTCAGCCTTCACCTCAAATTGTGCCACAAGATCTGATCCTCCTGTTAATACTGAAGAAAGCTCTAGTTCATGCAAATCCAGGACTCTTAATATGGCCACTCCAGAAGGCAAATCTTTTAGAGCTTCAAGTTCTGGTGAAGGTTTTAATGCTAGTGGCTCTAAATGTGATGTCAGTGTCTCTGGAAATATATTGCATAAAAATGACGCTGCACAATTTATGTTGCTTACTTCGGATGATAAACATAATCAATGTATAACTTTTGAAATCGATGAAGACATAATACAGGGCTCATTCATGGCTTCTGATAATTTAAGCATTGAGTCAGTGAAGGTTCAACTGGCATGCTTATACTACTTGCAACTTCCTATGGAGAGAAAACTCGAGGGGCTAGTTCCAATAATTCAGAATGTAAAATGTGGTGAAAAAGTTATTGAATCCCTCGAAACAATCAAAACATTTCAGGGGCATATGGGAAAAATTGTGGTTGAAGCTGTCATTGATGGATGGGTCCAAAAGCGCTTGATAAAACTGTACACCGATCACTGCTACAAGGTATCTGAGACACCCAACATGAAGTTGCTAAAGAAACTATATGATCTGGAGGTTTCAGACGATGAAGTTACTGTTTCTGAATGTGAATTGCAAGATTTATCAATAACTCCACTGTTGAATGCCCTCCATGCCCATAAAACATTTGCAATGCTAGACCTTTCCCACAACTTGTTAGGAAATGGTACTATGGAGAAACTCCAGCAAGTACTCACATCATCAGGCCAAAAATATGGTGGCTTAACGTTGGATCTGCATTGCAACAGCTTTGGTCCAACTGCTTTGTTCCAGATTTGTGAGTGCCCTCTGCTATTTACTCGATTGGAAGTGCTTAATATCTCAGGAAATCGTCTCACTGATGCATGCGCATCTTACCTTTCAACTATCTTGGAGAATTGCAAGGCCCTTTGCAGTTTGAGTATAGAGCGATGCTCCATCACATCTAGAACTATTCAAAAGGTTGCTGATGCGTTGAGTGCTGAATCTGTCCTTGAGCAACTTTGTATAGGATATAACAAGCCTATTTCTGGAAGTGCCATTACTAATTTACTCGTCAAGCTTGGCACTCTGAAAAGATTTTCAAAATTAAATATGAACGGCTTGAAGCTGAGCAAGCCTGTGGTTGATAGTCTTTGCCAGCTTGCTAAGCGCTTGTCCTTGTCAGTACTAATGCTTGGGGAAACTGGTATCGGACTTGACGGAGCATTGTTAGTAACTCAGTCATTGTTCCATGAAATTGAAGAGTTTGTTAAACTTGACTTATCATATTGCGGAGTGACATATAATTATGCTGTCAAACTAAGCACTAATTCTTCTATGGTTTGTGGCATTCTTGAGCTGAGCCTTTCAGGAAATCCTATTATGCAAGAGGTTTGTTCCTTTCATTTGGTACCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_2 TPR_7 TPR_8

Protein Analysis

1117

Amino Acids

125.57

Weight (kDa)

5.71

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	166 - 232	9.3e-07	Tetratricopeptide repeat
TPR_12	PF13424	209 - 279	3.6e-09	Tetratricopeptide repeat
TPR_1	PF00515	248 - 277	6.5e-06	Tetratricopeptide repeat
TPR_12	PF13424	379 - 449	1.3e-08	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18730
fragaria_vesca	FvH4_1g23980 FvH4_1g23980 FvH4_1g23980
malus_domestica	MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1
prunus_persica	Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1
pyrus_communis	pycom09g17130
rosa_chinensis	RchiOBHm_Chr2g0120111
rosa_laevigata	RLG00000018521
rosa_multiflora	Rmu_sc0010863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123720
rosa_rugosa	Rorug02G0226800
rosa_samantha	Rh2AG283400 Rh2BG294700 Rh2DG308400
rosa_wichuraiana	Rw2G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2821
Acc36I	ACCTGC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	3343
AccB1I	GGYRCC	1 cut(s)	3343
AccII	CGCG	2 cut(s)	53, 500
AciI	CCGC	1 cut(s)	3225
AclI	AACGTT	1 cut(s)	2699
AclWI	GGATC	3 cut(s)	1518, 1934, 2712
AcoI	YGGCCR	3 cut(s)	966, 1064, 1998
AcsI	RAATTY	5 cut(s)	835, 1079, 1113, 1221, 1892
AcuI	CTGAAG	1 cut(s)	1977
AcyI	GRCGYC	2 cut(s)	38, 258
AfeI	AGCGCT	2 cut(s)	2423, 3104
AfiI	CCNNNNNNNGG	8 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981
AhdI	GACNNNNNGTC	1 cut(s)	1783
AjnI	CCWGG	6 cut(s)	375, 540, 623, 1061, 1436, 1982
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw26I	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
AlwI	GGATC	3 cut(s)	1518, 1934, 2712
Ama87I	CYCGRG	3 cut(s)	242, 681, 2285
Aor51HI	AGCGCT	2 cut(s)	2423, 3104
ApeKI	GCWGC	3 cut(s)	319, 1515, 2111
ApoI	RAATTY	5 cut(s)	835, 1079, 1113, 1221, 1892
Asp718I	GGTACC	1 cut(s)	3343
AspLEI	GCGC	6 cut(s)	53, 502, 621, 2424, 2822, 3105
AspS9I	GGNCC	9 cut(s)	82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	6 cut(s)	236, 610, 1556, 1906, 2051, 2336
AsuII	TTCGAA	2 cut(s)	252, 1713
AvaI	CYCGRG	3 cut(s)	242, 681, 2285
AvaII	GGWCC	3 cut(s)	1072, 2413, 2726
AxyI	CCTNAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	2759
BalI	TGGCCA	3 cut(s)	968, 1066, 2000
BanI	GGYRCC	1 cut(s)	3343
BanII	GRGCYC	1 cut(s)	2195
BarI	GAAGNNNNNNTAC	6 cut(s)	26, 58, 2169, 2201, 2977, 3009
BauI	CACGAG	2 cut(s)	71, 356
BbsI	GAAGAC	4 cut(s)	261, 882, 1782, 2184
BbvCI	CCTCAGC	2 cut(s)	294, 662
BbvI	GCAGC	3 cut(s)	331, 1502, 2098
BccI	CCATC	6 cut(s)	68, 174, 608, 2399, 2403, 2897
BceAI	ACGGC	3 cut(s)	1518, 1725, 3067
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	6 cut(s)	377, 542, 625, 1063, 1438, 1984
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BfmI	CTRYAG	3 cut(s)	134, 1336, 1399
BfoI	RGCGCY	2 cut(s)	2425, 3106
BfuAI	ACCTGC	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	1934
BisI	GCNGC	3 cut(s)	320, 1516, 2112
BlpI	GCTNAGC	3 cut(s)	3062, 3099, 3293
BlsI	GCNGC	3 cut(s)	321, 1517, 2113
BmcAI	AGTACT	4 cut(s)	182, 413, 2664, 3120
Bme1390I	CCNGG	7 cut(s)	85, 377, 542, 625, 1063, 1438, 1984
Bme18I	GGWCC	3 cut(s)	1072, 2413, 2726
BmeRI	GACNNNNNGTC	1 cut(s)	1783
BmeT110I	CYCGRG	3 cut(s)	242, 681, 2285
BmgT120I	GGNCC	9 cut(s)	82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
BmiI	GGNNCC	2 cut(s)	2414, 3345
BmrFI	CCNGG	7 cut(s)	85, 377, 542, 625, 1063, 1438, 1984
BmsI	GCATC	6 cut(s)	276, 844, 2803, 2831, 2873, 2911
BpiI	GAAGAC	4 cut(s)	261, 882, 1782, 2184
BplI	GAGNNNNNCTC	4 cut(s)	1040, 1072, 2870, 2902
BpmI	CTGGAG	3 cut(s)	1989, 2525, 2639
Bpu10I	CCTNAGC	3 cut(s)	294, 662, 1175
Bpu1102I	GCTNAGC	3 cut(s)	3062, 3099, 3293
Bpu14I	TTCGAA	2 cut(s)	252, 1713
BpuEI	CTTGAG	4 cut(s)	929, 992, 2966, 3308
BpuMI	CCSGG	1 cut(s)	85
Bsa29I	ATCGAT	2 cut(s)	159, 2172
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	38, 258
BsaI	GGTCTC	1 cut(s)	1427
BsaJI	CCNNGG	3 cut(s)	220, 375, 858
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	8 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981
Bse1I	ACTGG	3 cut(s)	1878, 2247, 3142
Bse21I	CCTNAGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	2610, 2710
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	6 cut(s)	377, 542, 625, 1063, 1438, 1984
BseCI	ATCGAT	2 cut(s)	159, 2172
BseDI	CCNNGG	3 cut(s)	220, 375, 858
BseGI	GGATG	7 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	8 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981
BseMI	GCAATG	2 cut(s)	2610, 2710
BseNI	ACTGG	3 cut(s)	1878, 2247, 3142
BseRI	GAGGAG	3 cut(s)	89, 92, 311
BseSI	GKGCMC	1 cut(s)	2759
BseXI	GCAGC	3 cut(s)	331, 1502, 2098
BsgI	GTGCAG	4 cut(s)	157, 416, 1365, 2097
Bsh1236I	CGCG	2 cut(s)	53, 500
BshNI	GGYRCC	1 cut(s)	3343
BshVI	ATCGAT	2 cut(s)	159, 2172
BsiHKCI	CYCGRG	3 cut(s)	242, 681, 2285
BsiSI	CCGG	2 cut(s)	46, 85
BslFI	GGGAC	3 cut(s)	172, 202, 1263
BslI	CCNNNNNNNGG	8 cut(s)	76, 147, 226, 547, 595, 663, 1200, 2981
BsmAI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BsmBI	CGTCTC	2 cut(s)	245, 2810
BsmFI	GGGAC	3 cut(s)	172, 202, 1263
BsmI	GAATGC	4 cut(s)	406, 1749, 2581, 3282
Bso31I	GGTCTC	1 cut(s)	1427
BsoBI	CYCGRG	3 cut(s)	242, 681, 2285
Bsp119I	TTCGAA	2 cut(s)	252, 1713
Bsp1286I	GDGCHC	2 cut(s)	2195, 2759
Bsp1407I	TGTACA	2 cut(s)	1369, 2436
Bsp143I	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
Bsp1720I	GCTNAGC	3 cut(s)	3062, 3099, 3293
BspACI	CCGC	1 cut(s)	3225
BspDI	ATCGAT	2 cut(s)	159, 2172
BspFNI	CGCG	2 cut(s)	53, 500
BspLI	GGNNCC	2 cut(s)	2414, 3345
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	1518, 1934, 2712
BspQI	GCTCTTC	1 cut(s)	927
BspT104I	TTCGAA	2 cut(s)	252, 1713
BspT107I	GGYRCC	1 cut(s)	3343
BspTNI	GGTCTC	1 cut(s)	1427
BsrDI	GCAATG	2 cut(s)	2610, 2710
BsrGI	TGTACA	2 cut(s)	1369, 2436
BsrI	ACTGG	3 cut(s)	1878, 2247, 3142
BssECI	CCNNGG	3 cut(s)	220, 375, 858
BssMI	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
BssNI	GRCGYC	2 cut(s)	38, 258
BssSI	CACGAG	2 cut(s)	71, 356
BssT1I	CCWWGG	1 cut(s)	858
Bst2BI	CACGAG	2 cut(s)	71, 356
Bst2UI	CCWGG	6 cut(s)	377, 542, 625, 1063, 1438, 1984
Bst4CI	ACNGT	6 cut(s)	779, 892, 1292, 2436, 2530, 2571
Bst6I	CTCTTC	9 cut(s)	540, 588, 920, 927, 1205, 1425, 1578, 1629, 3189
BstACI	GRCGYC	2 cut(s)	38, 258
BstAPI	GCANNNNNTGC	1 cut(s)	1319
BstAUI	TGTACA	2 cut(s)	1369, 2436
BstBI	TTCGAA	2 cut(s)	252, 1713
BstENI	CCTNNNNNAGG	2 cut(s)	224, 545
BstF5I	GGATG	7 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414
BstFNI	CGCG	2 cut(s)	53, 500
BstH2I	RGCGCY	2 cut(s)	2425, 3106
BstHHI	GCGC	6 cut(s)	53, 502, 621, 2424, 2822, 3105
BstKTI	GATC	9 cut(s)	532, 829, 1513, 1676, 1937, 1942, 2446, 2503, 2707
BstMAI	GTCTC	8 cut(s)	245, 954, 1043, 1427, 1909, 2086, 2459, 2810
BstMBI	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 299, 625, 1319, 1746, 2585, 2930, 3067, 3100
BstNI	CCWGG	6 cut(s)	377, 542, 625, 1063, 1438, 1984
BstNSI	RCATGY	3 cut(s)	1575, 2250, 2820
BstSCI	CCNGG	7 cut(s)	83, 375, 540, 623, 1061, 1436, 1982
BstSFI	CTRYAG	3 cut(s)	134, 1336, 1399
BstSLI	GKGCMC	1 cut(s)	2759
BstUI	CGCG	2 cut(s)	53, 500
BstV1I	GCAGC	3 cut(s)	331, 1502, 2098
BstV2I	GAAGAC	4 cut(s)	261, 882, 1782, 2184
BstX2I	RGATCY	2 cut(s)	1934, 2704
BstXI	CCANNNNNNTGG	1 cut(s)	2687
BstYI	RGATCY	2 cut(s)	1934, 2704
Bsu15I	ATCGAT	2 cut(s)	159, 2172
Bsu36I	CCTNAGG	1 cut(s)	143
BsuTUI	ATCGAT	2 cut(s)	159, 2172
BtgZI	GCGATG	1 cut(s)	2896
BtsCI	GGATG	7 cut(s)	672, 859, 922, 1668, 1906, 2143, 2414
BtsI	GCAGTG	1 cut(s)	2446
BtsIMutI	CAGTG	6 cut(s)	1297, 2083, 2235, 2446, 2567, 2808
BveI	ACCTGC	1 cut(s)	141
CfoI	GCGC	6 cut(s)	53, 502, 621, 2424, 2822, 3105
Cfr13I	GGNCC	9 cut(s)	82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
ClaI	ATCGAT	2 cut(s)	159, 2172
CseI	GACGC	4 cut(s)	27, 266, 506, 2117
DpnI	GATC	9 cut(s)	531, 828, 1512, 1675, 1936, 1941, 2445, 2502, 2706
DpnII	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
DraI	TTTAAA	1 cut(s)	1623
DriI	GACNNNNNGTC	1 cut(s)	1783
EaeI	YGGCCR	3 cut(s)	966, 1064, 1998
Eam1104I	CTCTTC	9 cut(s)	540, 588, 920, 927, 1205, 1425, 1578, 1629, 3189
Eam1105I	GACNNNNNGTC	1 cut(s)	1783
EarI	CTCTTC	9 cut(s)	540, 588, 920, 927, 1205, 1425, 1578, 1629, 3189
Eco130I	CCWWGG	1 cut(s)	858
Eco24I	GRGCYC	1 cut(s)	2195
Eco31I	GGTCTC	1 cut(s)	1427
Eco47I	GGWCC	3 cut(s)	1072, 2413, 2726
Eco47III	AGCGCT	2 cut(s)	2423, 3104
Eco57I	CTGAAG	1 cut(s)	1977
Eco81I	CCTNAGG	1 cut(s)	143
Eco88I	CYCGRG	3 cut(s)	242, 681, 2285
EcoNI	CCTNNNNNAGG	2 cut(s)	224, 545
EcoO109I	RGGNCCY	3 cut(s)	139, 1072, 2857
EcoRII	CCWGG	6 cut(s)	375, 540, 623, 1061, 1436, 1982
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	3 cut(s)	1324, 1573, 2818
EcoT38I	GRGCYC	1 cut(s)	2195
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	2 cut(s)	245, 2810
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	3 cut(s)	172, 202, 1263
FauNDI	CATATG	1 cut(s)	2373
Fnu4HI	GCNGC	3 cut(s)	320, 1516, 2112
FokI	GGATG	7 cut(s)	679, 866, 929, 1655, 1913, 2150, 2421
FriOI	GRGCYC	1 cut(s)	2195
Fsp4HI	GCNGC	3 cut(s)	320, 1516, 2112
FspAI	RTGCGCAY	1 cut(s)	2821
FspI	TGCGCA	1 cut(s)	2821
GlaI	GCGC	6 cut(s)	52, 501, 620, 2423, 2821, 3104
GluI	GCNGC	3 cut(s)	320, 1516, 2112
GsuI	CTGGAG	3 cut(s)	1989, 2525, 2639
HaeII	RGCGCY	2 cut(s)	2425, 3106
HapII	CCGG	2 cut(s)	46, 85
HgaI	GACGC	4 cut(s)	27, 266, 506, 2117
HhaI	GCGC	6 cut(s)	53, 502, 621, 2424, 2822, 3105
Hin1I	GRCGYC	2 cut(s)	38, 258
Hin6I	GCGC	6 cut(s)	51, 500, 619, 2422, 2820, 3103
HinP1I	GCGC	6 cut(s)	51, 500, 619, 2422, 2820, 3103
HincII	GTYRAC	1 cut(s)	1260
HindII	GTYRAC	1 cut(s)	1260
HindIII	AAGCTT	2 cut(s)	431, 3011
HinfI	GANTC	7 cut(s)	1139, 1160, 1523, 1987, 2225, 2339, 2936
HpaII	CCGG	2 cut(s)	46, 85
HphI	GGTGA	6 cut(s)	236, 610, 1556, 1906, 2051, 2336
Hpy166II	GTNNAC	5 cut(s)	716, 1260, 1358, 1745, 2439
Hpy8I	GTNNAC	5 cut(s)	716, 1260, 1358, 1745, 2439
HpyCH4III	ACNGT	6 cut(s)	779, 892, 1292, 2436, 2530, 2571
HpyCH4IV	ACGT	3 cut(s)	96, 865, 2699
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 299, 625, 1319, 1746, 2585, 2930, 3067, 3100
HpySE526I	ACGT	3 cut(s)	96, 865, 2699
Hsp92I	GRCGYC	2 cut(s)	38, 258
HspAI	GCGC	6 cut(s)	51, 500, 619, 2422, 2820, 3103
KpnI	GGTACC	1 cut(s)	3347
Kzo9I	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	4 cut(s)	48, 1468, 2891, 3155
Lsp1109I	GCAGC	3 cut(s)	331, 1502, 2098
LweI	GCATC	6 cut(s)	276, 844, 2803, 2831, 2873, 2911
MaeII	ACGT	3 cut(s)	96, 865, 2699
MaeIII	GTNAC	3 cut(s)	2524, 3166, 3229
MalI	GATC	9 cut(s)	531, 828, 1512, 1675, 1936, 1941, 2445, 2502, 2706
MboI	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
MflI	RGATCY	2 cut(s)	1934, 2704
MhlI	GDGCHC	2 cut(s)	2195, 2759
MlsI	TGGCCA	3 cut(s)	968, 1066, 2000
MluNI	TGGCCA	3 cut(s)	968, 1066, 2000
MlyI	GAGTC	2 cut(s)	1981, 2234
MmeI	TCCRAC	2 cut(s)	2682, 2753
Mox20I	TGGCCA	3 cut(s)	968, 1066, 2000
Mph1103I	ATGCAT	3 cut(s)	1324, 1573, 2818
MscI	TGGCCA	3 cut(s)	968, 1066, 2000
MslI	CAYNNNNRTG	3 cut(s)	507, 777, 2103
Msp20I	TGGCCA	3 cut(s)	968, 1066, 2000
MspI	CCGG	2 cut(s)	46, 85
MspR9I	CCNGG	7 cut(s)	85, 377, 542, 625, 1063, 1438, 1984
Mva1269I	GAATGC	4 cut(s)	406, 1749, 2581, 3282
MvaI	CCWGG	6 cut(s)	377, 542, 625, 1063, 1438, 1984
MvnI	CGCG	2 cut(s)	53, 500
MwoI	GCNNNNNNNGC	9 cut(s)	89, 299, 625, 1319, 1746, 2585, 2930, 3067, 3100
NciI	CCSGG	1 cut(s)	85
NdeI	CATATG	1 cut(s)	2373
NdeII	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
NlaIV	GGNNCC	2 cut(s)	2414, 3345
NmuCI	GTSAC	1 cut(s)	3229
NsbI	TGCGCA	1 cut(s)	2821
NsiI	ATGCAT	3 cut(s)	1324, 1573, 2818
NspI	RCATGY	3 cut(s)	1575, 2250, 2820
NspV	TTCGAA	2 cut(s)	252, 1713
PaeI	GCATGC	3 cut(s)	1575, 2250, 2820
PaeR7I	CTCGAG	2 cut(s)	242, 2285
PciSI	GCTCTTC	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 249
PctI	GAATGC	4 cut(s)	406, 1749, 2581, 3282
PfeI	GAWTC	5 cut(s)	1139, 1160, 1523, 2339, 2936
PfoI	TCCNGGA	1 cut(s)	1982
PkrI	GCNGC	3 cut(s)	321, 1517, 2113
PleI	GAGTC	2 cut(s)	1981, 2233
PpsI	GAGTC	2 cut(s)	1981, 2233
PpuMI	RGGWCCY	1 cut(s)	1072
Psp1406I	AACGTT	1 cut(s)	2699
Psp5II	RGGWCCY	1 cut(s)	1072
Psp6I	CCWGG	6 cut(s)	375, 540, 623, 1061, 1436, 1982
PspGI	CCWGG	6 cut(s)	375, 540, 623, 1061, 1436, 1982
PspN4I	GGNNCC	2 cut(s)	2414, 3345
PspPI	GGNCC	9 cut(s)	82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
PspPPI	RGGWCCY	1 cut(s)	1072
PspXI	VCTCGAGB	1 cut(s)	2285
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	1934, 2704
RseI	CAYNNNNRTG	3 cut(s)	507, 777, 2103
SapI	GCTCTTC	1 cut(s)	927
SatI	GCNGC	3 cut(s)	320, 1516, 2112
Sau3AI	GATC	9 cut(s)	529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
Sau96I	GGNCC	9 cut(s)	82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
SbfI	CCTGCAGG	1 cut(s)	138
ScaI	AGTACT	4 cut(s)	182, 413, 2664, 3120
SchI	GAGTC	2 cut(s)	1981, 2234
ScrFI	CCNGG	7 cut(s)	85, 377, 542, 625, 1063, 1438, 1984
SdaI	CCTGCAGG	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	2195, 2759
SfaNI	GCATC	6 cut(s)	276, 844, 2803, 2831, 2873, 2911
SfcI	CTRYAG	3 cut(s)	134, 1336, 1399
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
Sfr274I	CTCGAG	2 cut(s)	242, 2285
SfuI	TTCGAA	2 cut(s)	252, 1713
SinI	GGWCC	3 cut(s)	1072, 2413, 2726
SlaI	CTCGAG	2 cut(s)	242, 2285
SmiMI	CAYNNNNRTG	3 cut(s)	507, 777, 2103
SmlI	CTYRAG	6 cut(s)	242, 944, 1007, 2285, 2945, 3287
SmoI	CTYRAG	6 cut(s)	242, 944, 1007, 2285, 2945, 3287
SphI	GCATGC	3 cut(s)	1575, 2250, 2820
Sse8387I	CCTGCAGG	1 cut(s)	138
SsiI	CCGC	1 cut(s)	3225
StyD4I	CCNGG	7 cut(s)	83, 375, 540, 623, 1061, 1436, 1982
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	6 cut(s)	779, 892, 1292, 2436, 2530, 2571
TaiI	ACGT	3 cut(s)	99, 868, 2702
TaqI	TCGA	9 cut(s)	153, 159, 243, 252, 1713, 2172, 2286, 2346, 2773
TatI	WGTACW	7 cut(s)	180, 411, 1369, 1529, 2436, 2662, 3118
TfiI	GAWTC	5 cut(s)	1139, 1160, 1523, 2339, 2936
TscAI	CASTG	6 cut(s)	1297, 2083, 2235, 2453, 2574, 2815
TseFI	GTSAC	1 cut(s)	3229
TseI	GCWGC	3 cut(s)	319, 1515, 2111
Tsp45I	GTSAC	1 cut(s)	3229
TspGWI	ACGGA	2 cut(s)	227, 3168
TspRI	CASTG	6 cut(s)	1297, 2083, 2235, 2453, 2574, 2815
VpaK11BI	GGWCC	3 cut(s)	1072, 2413, 2726
XagI	CCTNNNNNAGG	2 cut(s)	224, 545
XapI	RAATTY	5 cut(s)	835, 1079, 1113, 1221, 1892
XbaI	TCTAGA	1 cut(s)	2897
XceI	RCATGY	3 cut(s)	1575, 2250, 2820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2687
XhoI	CTCGAG	2 cut(s)	242, 2285
ZrmI	AGTACT	4 cut(s)	182, 413, 2664, 3120
Zsp2I	ATGCAT	3 cut(s)	1324, 1573, 2818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.