Rh2BG294700

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012067
Physical Location & Seq
Forward (+)
33465138 .. 33477870
12733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG294700.1

Sequence Viewer

Length: 3354 bp
ATGGCAAGGGAGGAAGCGAAGCTGAGTGAGGCGAAGGCGTCTTACCGGAGCGCGAAGGCCATCGGCAACCACGAGGAGGAGGCCCGGTGGGCCAACGTCATCGGCAACTTGTTGAAGGACAGAGGCGAGTACCTGCAGGCCCTCAAGTGGTTCGACATCGATTACCATCTCTGCACCAAGTACTTGTCCCCCAAGCACTCCCTTGCCACCTGTCAGTCCCTCGGTGAGGTCTATCTCCGTCTCGAGCGTTTCGAAGACGCCCTCGTGTATCAGAAAAAACATTTGATGCTTGCTGAGGAGGCCAATGACCTTGTTGAGCAGCAAAGGGCCAATACGCAACTAGGTCGTACCTACCACGAGATGTATCTAAAATCCCTGGACGAACATCAGTCGGTGCAGAATGCCAAAAAGTACTTCAAGTCTGCTATGAAGCTTGCACAGGCTATCAAAGAGAACCCACCTTCTAATAAATCTTTTTTTATCAAAGAATATATTGACGCGCATAACAATGTAGGATTGCTTGAACTTGATCGTGATAACCTGGAAGAGGCTGAGAAAATCTTGACTAGAGCATTAGTTATTTGCGACCAAGAAGAGGTGAACGAATATGATGATGGGCGCACCAGGCTTCATCACAATCTTGGAAAGATTTACACCGAGCTGAGGATGTGGGAAAATGCTCGGGAACACATTGAGAAGGACATTCTGATATGTAAACAAATTGGGCATTGTGAAGGAGAGGCAAAGGGGTATATCAATCTTGGCGAGTTGCATAACCGTGTTCAGAAATATCAGGAGGCAATCCTTTGCTACCAAAAAGCACTTGATCTAGCAAATTCAATGGAAGATGAGGATGCCTTGGTACGTCAAATTGAAGACAATATCAAAACTGTAAAAGAATTAGGTAAAGTAATGGATGACATGAAGAGAGAAGAGCAAAATCTCAAGAAGCTAACAAGAGACATGGCCATAGCAAGAGGCACAACACATAAGAGGAATTGTCAGCTCAAGCAAATTGCTTCTCTTGATGTTCTTATTAACAAATCAGAGACTATCTCTGCCTGGCCAAAGGTCCTTGAATTTGCAAAAAAGAAGAAGAAAGTAGCAACTGAAATTTGTGATAAAGAAAAGATTGCTGATTCACTTTTGAGCATTGGAGAATCCTACTTGAAGCTAAGGAAGTTCCAGAAAGCCCTTAAATGGTGCATGAAGGGTTTGAAAATTTACAAATCACTTGGAAACTTGGAGGGACAGGCGTTGACACAAATTAACATAGGTCATGTTTTGGACAGTGAAGGTTATTATGAAGAAGCACTCAATGCATTTACAGATAGCTACAGGCTTGCTGTTGAGGGTAAACTTTCTTATGTACAGCGTACTGCACTAGAAAATATGCACTATAGCAACTTGAACAGATTTGATGATGTTGAAGAGACCAGGAGATTGCAACTTGAAATTGACAAATTGGAGCAAAACAATGAAGGGCTTGAAACAGAAATTACGGCAGAGGATCGCTGCTCTGAATCTAGTACAGAAGGGAGTGGTGATTTCTCAGATAATATGCCTAATGCATGCTGTCCAGAAGAGATAAGAAACTCCCAATCTAGCAAATCACAATCTTTAAACCAAAAGGAAGAGTTGAATGATGATGTACCTTTGATTTCTCTCATCCGATCTACCAAAGTGTCGTCTAAGAAGAAATCAGCTCATTTCGAAAACAATGACCTTGGAGTGGTGGGCCGTAAACGCATTCGTTTAGTCCTGTCTGATGATGAAGACGAAATGTCTGATGAGGCAGAAAGCCCAAAAGTCAGGCATAACAAAATCCCATTAAATGTCGCTACATCTAGTGAAGTTAAGACTAGAAGTAATACAGCCAGTCCTACTACTAAATTTCAGGATGTCTCAGCCTTCACCTCAAATTGTGCCACAAGATCTGATCCTCCTGTTAATACTGAAGAAAGCTCTAGTTCAAGCAAATCCAGGACTCTTAATATGGCCACTCCAGAAGGCAAATCTTTTAGAGCTTCAAGTTCTGGTGAAGGTTTTAATGCTAGTGGCTCTAAATGTGATGTCAGTGTATCTGGAAATATATTGCATAAAAATGATGCTGCACAATTTATGTTGCTTACTTCGGATGATAAACATAATCAATGTATAACTTTTGAAATCGATGAAGACATAATACAGGGCTCATTCATGGCTTCTGATAATTTAAGCATTGAGTCAGTGAAGGTTCAACTGGCATGCTTATACTACTTGCAACTTCCTATGGAGAGAAAACTCGAGGGGCTAGTTCCAATAATTCAGAATGTAAAATGTGGTGAAAAAGCTATTGAATCCCTCGAAACAATCAAAACATTTCGGGGGCATATGGGAAAAATTGTGGTTGAAGCTGTCATTGATGGATGGGTCCAAAAGCGCTTGATAAAACTGTACACCGATCACTGCTACAAGGTATCTGAGACACCCAACATGAAGTTGCTAAAGAAACTATATGATCTGGAGGTTTCAGACGATGAAGTTACTGTTTCTGAATGTGAATTGCAAGATTTATCAATAACCCCACTGTTGAATGCCCTCCATGCCCATAAAACATTTGCAATGCTAGACCTTTCCCACAACTTGTTAGGAAATGGTACTATGGAGAAACTCCAGCAAGTACTCACATCATCAGGCCAAAAATATGGTGGCTTAACGTTGGATCTGCATTGCAACAGCTTTGGTCCAACTGCTTTGTTCCAGATTTGTGAGTGCCCTCTGCTATTTACTCGATTGGAAGTGCTTAATATCTCAGGAAATCGTCTCACTGATGCATGCGCATCTTACCTTTCAACTATCTTGGAGAATTGCAAGGCCCTTTGCAGTTTGAGTATAGAGCGATGCTCCATCACATCTAGAACTATTCAAAAGGTTGCTGATGCGTTGAGTGCTGAATCTGTCCTTGAGCAACTTTGTATAGGATATAACAAGCCTATTTCTGGAAGTGCCATTACTAATTTACTCGTCAAGCTTGGCACTCTGAAAAGATTTTCAAAATTAAATATGAACGGCTTGAAGCTGAGCAAGCCTGTGGTTGATAGTCTTTGCCAGCTTGCTAAACGCTTGTCCTTGTCAGTACTAATGCTTGGGGAAACTGGTATCGGACTTGACGGAGCATTGTTAGTAACTGAGTCATTGTTCCATGAAATTGAAGAGTTTGTTAAACTTGACTTATCATATTGCGGAGTGACATATAATTATGCTGTCAAACTAAGCACTAATTCTTCTATGGTTTGTGGCATTCTTGAGCTGAGCCTTTCAGGAAATCCTATTATGCAAGAGGTTTGTTCCTTTTATTCGGTACCTTGCTAA

Protein Analysis

1117

Amino Acids

125.48

Weight (kDa)

5.72

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 28 - 99 1e-05 Tetratricopeptide repeat
TPR_12 PF13424 166 - 232 9.3e-07 Tetratricopeptide repeat
TPR_12 PF13424 209 - 279 3.6e-09 Tetratricopeptide repeat
TPR_1 PF00515 248 - 277 6.5e-06 Tetratricopeptide repeat
TPR_12 PF13424 379 - 449 2.3e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18730
fragaria_vesca FvH4_1g23980 FvH4_1g23980 FvH4_1g23980
malus_domestica MD00G1172700.v1.1 MD09G1255500.v1.1 MD17G1248600.v1.1
prunus_persica Prupe.3G147500_v2.0.a1 Prupe.3G147500_v2.0.a1
pyrus_communis pycom09g17130
rosa_chinensis RchiOBHm_Chr2g0120111
rosa_laevigata RLG00000018521
rosa_multiflora Rmu_sc0010863.1_g000001
rosa_roxburghii Rroxscaffold_2G00123720
rosa_rugosa Rorug02G0226800
rosa_samantha Rh2AG283400 Rh2BG294700 Rh2DG308400
rosa_wichuraiana Rw2G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2821
Acc36I ACCTGC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 3343
AccB1I GGYRCC 1 cut(s) 3343
AccII CGCG 2 cut(s) 53, 500
AciI CCGC 1 cut(s) 3225
AclI AACGTT 1 cut(s) 2699
AclWI GGATC 3 cut(s) 1518, 1934, 2712
AcoI YGGCCR 3 cut(s) 966, 1064, 1998
AcsI RAATTY 5 cut(s) 835, 1079, 1113, 1221, 1892
AcuI CTGAAG 1 cut(s) 1977
AcyI GRCGYC 2 cut(s) 38, 258
AfeI AGCGCT 1 cut(s) 2423
AfiI CCNNNNNNNGG 9 cut(s) 76, 147, 226, 547, 595, 663, 1200, 1732, 2981
AhdI GACNNNNNGTC 1 cut(s) 1783
AjnI CCWGG 6 cut(s) 375, 540, 623, 1061, 1436, 1982
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
Alw26I GTCTC 7 cut(s) 245, 954, 1043, 1427, 1909, 2459, 2810
AlwI GGATC 3 cut(s) 1518, 1934, 2712
Ama87I CYCGRG 3 cut(s) 242, 681, 2285
Aor51HI AGCGCT 1 cut(s) 2423
ApeKI GCWGC 3 cut(s) 319, 1515, 2111
ApoI RAATTY 5 cut(s) 835, 1079, 1113, 1221, 1892
Asp718I GGTACC 1 cut(s) 3343
AspLEI GCGC 5 cut(s) 53, 502, 621, 2424, 2822
AspS9I GGNCC 9 cut(s) 82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 6 cut(s) 236, 610, 1556, 1906, 2051, 2336
AsuII TTCGAA 2 cut(s) 252, 1713
AvaI CYCGRG 3 cut(s) 242, 681, 2285
AvaII GGWCC 3 cut(s) 1072, 2413, 2726
BaeGI GKGCMC 1 cut(s) 2759
BalI TGGCCA 3 cut(s) 968, 1066, 2000
BanI GGYRCC 1 cut(s) 3343
BanII GRGCYC 1 cut(s) 2195
BarI GAAGNNNNNNTAC 6 cut(s) 26, 58, 2169, 2201, 2977, 3009
BauI CACGAG 3 cut(s) 71, 263, 356
BbsI GAAGAC 4 cut(s) 261, 882, 1782, 2184
BbvCI CCTCAGC 2 cut(s) 294, 662
BbvI GCAGC 3 cut(s) 331, 1502, 2098
BccI CCATC 6 cut(s) 68, 174, 608, 2399, 2403, 2897
BceAI ACGGC 3 cut(s) 1518, 1725, 3067
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 6 cut(s) 377, 542, 625, 1063, 1438, 1984
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 7 cut(s) 245, 954, 1043, 1427, 1909, 2459, 2810
BfmI CTRYAG 3 cut(s) 134, 1336, 1399
BfoI RGCGCY 1 cut(s) 2425
BfuAI ACCTGC 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 89
BglII AGATCT 1 cut(s) 1934
BisI GCNGC 3 cut(s) 320, 1516, 2112
BlpI GCTNAGC 2 cut(s) 3062, 3293
BlsI GCNGC 3 cut(s) 321, 1517, 2113
BmcAI AGTACT 4 cut(s) 182, 413, 2664, 3120
Bme1390I CCNGG 7 cut(s) 85, 377, 542, 625, 1063, 1438, 1984
Bme18I GGWCC 3 cut(s) 1072, 2413, 2726
BmeRI GACNNNNNGTC 1 cut(s) 1783
BmeT110I CYCGRG 3 cut(s) 242, 681, 2285
BmgT120I GGNCC 9 cut(s) 82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
BmiI GGNNCC 2 cut(s) 2414, 3345
BmrFI CCNGG 7 cut(s) 85, 377, 542, 625, 1063, 1438, 1984
BmsI GCATC 7 cut(s) 276, 844, 2098, 2803, 2831, 2873, 2911
BpiI GAAGAC 4 cut(s) 261, 882, 1782, 2184
BplI GAGNNNNNCTC 4 cut(s) 1040, 1072, 2870, 2902
BpmI CTGGAG 3 cut(s) 1989, 2525, 2639
Bpu10I CCTNAGC 3 cut(s) 294, 662, 1175
Bpu1102I GCTNAGC 2 cut(s) 3062, 3293
Bpu14I TTCGAA 2 cut(s) 252, 1713
BpuEI CTTGAG 5 cut(s) 128, 929, 992, 2966, 3308
BpuMI CCSGG 1 cut(s) 85
Bsa29I ATCGAT 2 cut(s) 159, 2172
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 2 cut(s) 38, 258
BsaI GGTCTC 1 cut(s) 1427
BsaJI CCNNGG 4 cut(s) 220, 375, 858, 1726
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 9 cut(s) 76, 147, 226, 547, 595, 663, 1200, 1732, 2981
Bse1I ACTGG 3 cut(s) 1878, 2247, 3142
Bse3DI GCAATG 2 cut(s) 2610, 2710
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 6 cut(s) 377, 542, 625, 1063, 1438, 1984
BseCI ATCGAT 2 cut(s) 159, 2172
BseDI CCNNGG 4 cut(s) 220, 375, 858, 1726
BseGI GGATG 7 cut(s) 672, 859, 922, 1668, 1906, 2143, 2414
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 9 cut(s) 76, 147, 226, 547, 595, 663, 1200, 1732, 2981
BseMI GCAATG 2 cut(s) 2610, 2710
BseNI ACTGG 3 cut(s) 1878, 2247, 3142
BseRI GAGGAG 3 cut(s) 89, 92, 311
BseSI GKGCMC 1 cut(s) 2759
BseXI GCAGC 3 cut(s) 331, 1502, 2098
BsgI GTGCAG 4 cut(s) 157, 416, 1365, 2097
Bsh1236I CGCG 2 cut(s) 53, 500
BshNI GGYRCC 1 cut(s) 3343
BshVI ATCGAT 2 cut(s) 159, 2172
BsiHKCI CYCGRG 3 cut(s) 242, 681, 2285
BsiSI CCGG 2 cut(s) 46, 85
BslFI GGGAC 3 cut(s) 172, 202, 1263
BslI CCNNNNNNNGG 9 cut(s) 76, 147, 226, 547, 595, 663, 1200, 1732, 2981
BsmAI GTCTC 7 cut(s) 245, 954, 1043, 1427, 1909, 2459, 2810
BsmBI CGTCTC 2 cut(s) 245, 2810
BsmFI GGGAC 3 cut(s) 172, 202, 1263
BsmI GAATGC 4 cut(s) 406, 1749, 2581, 3282
Bso31I GGTCTC 1 cut(s) 1427
BsoBI CYCGRG 3 cut(s) 242, 681, 2285
Bsp119I TTCGAA 2 cut(s) 252, 1713
Bsp1286I GDGCHC 2 cut(s) 2195, 2759
Bsp1407I TGTACA 2 cut(s) 1369, 2436
Bsp143I GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
Bsp1720I GCTNAGC 2 cut(s) 3062, 3293
BspACI CCGC 1 cut(s) 3225
BspDI ATCGAT 2 cut(s) 159, 2172
BspFNI CGCG 2 cut(s) 53, 500
BspLI GGNNCC 2 cut(s) 2414, 3345
BspMAI CTGCAG 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 1518, 1934, 2712
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 2 cut(s) 252, 1713
BspT107I GGYRCC 1 cut(s) 3343
BspTNI GGTCTC 1 cut(s) 1427
BsrDI GCAATG 2 cut(s) 2610, 2710
BsrGI TGTACA 2 cut(s) 1369, 2436
BsrI ACTGG 3 cut(s) 1878, 2247, 3142
BssECI CCNNGG 4 cut(s) 220, 375, 858, 1726
BssMI GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
BssNI GRCGYC 2 cut(s) 38, 258
BssSI CACGAG 3 cut(s) 71, 263, 356
BssT1I CCWWGG 2 cut(s) 858, 1726
Bst2BI CACGAG 3 cut(s) 71, 263, 356
Bst2UI CCWGG 6 cut(s) 377, 542, 625, 1063, 1438, 1984
Bst4CI ACNGT 6 cut(s) 779, 892, 1292, 2436, 2530, 2571
Bst6I CTCTTC 8 cut(s) 540, 588, 920, 927, 1425, 1578, 1629, 3189
BstACI GRCGYC 2 cut(s) 38, 258
BstAPI GCANNNNNTGC 1 cut(s) 1319
BstAUI TGTACA 2 cut(s) 1369, 2436
BstBI TTCGAA 2 cut(s) 252, 1713
BstENI CCTNNNNNAGG 2 cut(s) 224, 545
BstF5I GGATG 7 cut(s) 672, 859, 922, 1668, 1906, 2143, 2414
BstFNI CGCG 2 cut(s) 53, 500
BstH2I RGCGCY 1 cut(s) 2425
BstHHI GCGC 5 cut(s) 53, 502, 621, 2424, 2822
BstKTI GATC 9 cut(s) 532, 829, 1513, 1676, 1937, 1942, 2446, 2503, 2707
BstMAI GTCTC 7 cut(s) 245, 954, 1043, 1427, 1909, 2459, 2810
BstMBI GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
BstMWI GCNNNNNNNGC 8 cut(s) 89, 299, 625, 1319, 1746, 2585, 2930, 3067
BstNI CCWGG 6 cut(s) 377, 542, 625, 1063, 1438, 1984
BstNSI RCATGY 3 cut(s) 1575, 2250, 2820
BstSCI CCNGG 7 cut(s) 83, 375, 540, 623, 1061, 1436, 1982
BstSFI CTRYAG 3 cut(s) 134, 1336, 1399
BstSLI GKGCMC 1 cut(s) 2759
BstUI CGCG 2 cut(s) 53, 500
BstV1I GCAGC 3 cut(s) 331, 1502, 2098
BstV2I GAAGAC 4 cut(s) 261, 882, 1782, 2184
BstX2I RGATCY 2 cut(s) 1934, 2704
BstXI CCANNNNNNTGG 1 cut(s) 2687
BstYI RGATCY 2 cut(s) 1934, 2704
Bsu15I ATCGAT 2 cut(s) 159, 2172
BsuTUI ATCGAT 2 cut(s) 159, 2172
BtgZI GCGATG 1 cut(s) 2896
BtsCI GGATG 7 cut(s) 672, 859, 922, 1668, 1906, 2143, 2414
BtsI GCAGTG 1 cut(s) 2446
BtsIMutI CAGTG 6 cut(s) 1297, 2083, 2235, 2446, 2567, 2808
BveI ACCTGC 1 cut(s) 141
CfoI GCGC 5 cut(s) 53, 502, 621, 2424, 2822
Cfr13I GGNCC 9 cut(s) 82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
ClaI ATCGAT 2 cut(s) 159, 2172
CseI GACGC 3 cut(s) 27, 266, 506
DpnI GATC 9 cut(s) 531, 828, 1512, 1675, 1936, 1941, 2445, 2502, 2706
DpnII GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
DraI TTTAAA 1 cut(s) 1623
DriI GACNNNNNGTC 1 cut(s) 1783
EaeI YGGCCR 3 cut(s) 966, 1064, 1998
Eam1104I CTCTTC 8 cut(s) 540, 588, 920, 927, 1425, 1578, 1629, 3189
Eam1105I GACNNNNNGTC 1 cut(s) 1783
EarI CTCTTC 8 cut(s) 540, 588, 920, 927, 1425, 1578, 1629, 3189
Eco130I CCWWGG 2 cut(s) 858, 1726
Eco24I GRGCYC 1 cut(s) 2195
Eco31I GGTCTC 1 cut(s) 1427
Eco47I GGWCC 3 cut(s) 1072, 2413, 2726
Eco47III AGCGCT 1 cut(s) 2423
Eco57I CTGAAG 1 cut(s) 1977
Eco88I CYCGRG 3 cut(s) 242, 681, 2285
EcoNI CCTNNNNNAGG 2 cut(s) 224, 545
EcoO109I RGGNCCY 3 cut(s) 139, 1072, 2857
EcoRII CCWGG 6 cut(s) 375, 540, 623, 1061, 1436, 1982
EcoT14I CCWWGG 2 cut(s) 858, 1726
EcoT22I ATGCAT 3 cut(s) 1324, 1573, 2818
EcoT38I GRGCYC 1 cut(s) 2195
ErhI CCWWGG 2 cut(s) 858, 1726
Esp3I CGTCTC 2 cut(s) 245, 2810
FaqI GGGAC 3 cut(s) 172, 202, 1263
FauNDI CATATG 1 cut(s) 2373
Fnu4HI GCNGC 3 cut(s) 320, 1516, 2112
FokI GGATG 7 cut(s) 679, 866, 929, 1655, 1913, 2150, 2421
FriOI GRGCYC 1 cut(s) 2195
Fsp4HI GCNGC 3 cut(s) 320, 1516, 2112
FspAI RTGCGCAY 1 cut(s) 2821
FspI TGCGCA 1 cut(s) 2821
GlaI GCGC 5 cut(s) 52, 501, 620, 2423, 2821
GluI GCNGC 3 cut(s) 320, 1516, 2112
GsuI CTGGAG 3 cut(s) 1989, 2525, 2639
HaeII RGCGCY 1 cut(s) 2425
HapII CCGG 2 cut(s) 46, 85
HgaI GACGC 3 cut(s) 27, 266, 506
HhaI GCGC 5 cut(s) 53, 502, 621, 2424, 2822
Hin1I GRCGYC 2 cut(s) 38, 258
Hin6I GCGC 5 cut(s) 51, 500, 619, 2422, 2820
HinP1I GCGC 5 cut(s) 51, 500, 619, 2422, 2820
HincII GTYRAC 1 cut(s) 1260
HindII GTYRAC 1 cut(s) 1260
HindIII AAGCTT 2 cut(s) 431, 3011
HinfI GANTC 8 cut(s) 1139, 1160, 1523, 1987, 2225, 2339, 2936, 3173
HpaII CCGG 2 cut(s) 46, 85
HphI GGTGA 6 cut(s) 236, 610, 1556, 1906, 2051, 2336
Hpy166II GTNNAC 6 cut(s) 601, 716, 1260, 1358, 1745, 2439
Hpy8I GTNNAC 6 cut(s) 601, 716, 1260, 1358, 1745, 2439
HpyCH4III ACNGT 6 cut(s) 779, 892, 1292, 2436, 2530, 2571
HpyCH4IV ACGT 3 cut(s) 96, 865, 2699
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 299, 625, 1319, 1746, 2585, 2930, 3067
HpySE526I ACGT 3 cut(s) 96, 865, 2699
Hsp92I GRCGYC 2 cut(s) 38, 258
HspAI GCGC 5 cut(s) 51, 500, 619, 2422, 2820
KpnI GGTACC 1 cut(s) 3347
Kzo9I GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 4 cut(s) 48, 1468, 2891, 3155
Lsp1109I GCAGC 3 cut(s) 331, 1502, 2098
LweI GCATC 7 cut(s) 276, 844, 2098, 2803, 2831, 2873, 2911
MaeII ACGT 3 cut(s) 96, 865, 2699
MaeIII GTNAC 3 cut(s) 2524, 3166, 3229
MalI GATC 9 cut(s) 531, 828, 1512, 1675, 1936, 1941, 2445, 2502, 2706
MboI GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
MflI RGATCY 2 cut(s) 1934, 2704
MhlI GDGCHC 2 cut(s) 2195, 2759
MlsI TGGCCA 3 cut(s) 968, 1066, 2000
MluNI TGGCCA 3 cut(s) 968, 1066, 2000
MlyI GAGTC 3 cut(s) 1981, 2234, 3182
MmeI TCCRAC 2 cut(s) 2682, 2753
Mox20I TGGCCA 3 cut(s) 968, 1066, 2000
Mph1103I ATGCAT 3 cut(s) 1324, 1573, 2818
MscI TGGCCA 3 cut(s) 968, 1066, 2000
MslI CAYNNNNRTG 3 cut(s) 507, 777, 2103
Msp20I TGGCCA 3 cut(s) 968, 1066, 2000
MspI CCGG 2 cut(s) 46, 85
MspR9I CCNGG 7 cut(s) 85, 377, 542, 625, 1063, 1438, 1984
Mva1269I GAATGC 4 cut(s) 406, 1749, 2581, 3282
MvaI CCWGG 6 cut(s) 377, 542, 625, 1063, 1438, 1984
MvnI CGCG 2 cut(s) 53, 500
MwoI GCNNNNNNNGC 8 cut(s) 89, 299, 625, 1319, 1746, 2585, 2930, 3067
NciI CCSGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 2373
NdeII GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
NlaIV GGNNCC 2 cut(s) 2414, 3345
NmuCI GTSAC 1 cut(s) 3229
NsbI TGCGCA 1 cut(s) 2821
NsiI ATGCAT 3 cut(s) 1324, 1573, 2818
NspI RCATGY 3 cut(s) 1575, 2250, 2820
NspV TTCGAA 2 cut(s) 252, 1713
PaeI GCATGC 3 cut(s) 1575, 2250, 2820
PaeR7I CTCGAG 2 cut(s) 242, 2285
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 249
PctI GAATGC 4 cut(s) 406, 1749, 2581, 3282
PfeI GAWTC 5 cut(s) 1139, 1160, 1523, 2339, 2936
PfoI TCCNGGA 1 cut(s) 1982
PkrI GCNGC 3 cut(s) 321, 1517, 2113
PleI GAGTC 3 cut(s) 1981, 2233, 3181
PpsI GAGTC 3 cut(s) 1981, 2233, 3181
PpuMI RGGWCCY 1 cut(s) 1072
Psp1406I AACGTT 1 cut(s) 2699
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 6 cut(s) 375, 540, 623, 1061, 1436, 1982
PspGI CCWGG 6 cut(s) 375, 540, 623, 1061, 1436, 1982
PspN4I GGNNCC 2 cut(s) 2414, 3345
PspPI GGNCC 9 cut(s) 82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
PspPPI RGGWCCY 1 cut(s) 1072
PspXI VCTCGAGB 1 cut(s) 2285
PstI CTGCAG 1 cut(s) 138
PsuI RGATCY 2 cut(s) 1934, 2704
RseI CAYNNNNRTG 3 cut(s) 507, 777, 2103
SapI GCTCTTC 1 cut(s) 927
SatI GCNGC 3 cut(s) 320, 1516, 2112
Sau3AI GATC 9 cut(s) 529, 826, 1510, 1673, 1934, 1939, 2443, 2500, 2704
Sau96I GGNCC 9 cut(s) 82, 90, 139, 327, 1072, 1738, 2413, 2726, 2857
SbfI CCTGCAGG 1 cut(s) 138
ScaI AGTACT 4 cut(s) 182, 413, 2664, 3120
SchI GAGTC 3 cut(s) 1981, 2234, 3182
ScrFI CCNGG 7 cut(s) 85, 377, 542, 625, 1063, 1438, 1984
SdaI CCTGCAGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 2195, 2759
SfaNI GCATC 7 cut(s) 276, 844, 2098, 2803, 2831, 2873, 2911
SfcI CTRYAG 3 cut(s) 134, 1336, 1399
SfiI GGCCNNNNNGGCC 1 cut(s) 89
Sfr274I CTCGAG 2 cut(s) 242, 2285
SfuI TTCGAA 2 cut(s) 252, 1713
SinI GGWCC 3 cut(s) 1072, 2413, 2726
SlaI CTCGAG 2 cut(s) 242, 2285
SmiMI CAYNNNNRTG 3 cut(s) 507, 777, 2103
SmlI CTYRAG 7 cut(s) 143, 242, 944, 1007, 2285, 2945, 3287
SmoI CTYRAG 7 cut(s) 143, 242, 944, 1007, 2285, 2945, 3287
SphI GCATGC 3 cut(s) 1575, 2250, 2820
Sse8387I CCTGCAGG 1 cut(s) 138
SsiI CCGC 1 cut(s) 3225
StyD4I CCNGG 7 cut(s) 83, 375, 540, 623, 1061, 1436, 1982
StyI CCWWGG 2 cut(s) 858, 1726
TaaI ACNGT 6 cut(s) 779, 892, 1292, 2436, 2530, 2571
TaiI ACGT 3 cut(s) 99, 868, 2702
TaqI TCGA 9 cut(s) 153, 159, 243, 252, 1713, 2172, 2286, 2346, 2773
TatI WGTACW 7 cut(s) 180, 411, 1369, 1529, 2436, 2662, 3118
TfiI GAWTC 5 cut(s) 1139, 1160, 1523, 2339, 2936
TscAI CASTG 6 cut(s) 1297, 2083, 2235, 2453, 2574, 2815
TseFI GTSAC 1 cut(s) 3229
TseI GCWGC 3 cut(s) 319, 1515, 2111
Tsp45I GTSAC 1 cut(s) 3229
TspGWI ACGGA 2 cut(s) 227, 3168
TspRI CASTG 6 cut(s) 1297, 2083, 2235, 2453, 2574, 2815
VpaK11BI GGWCC 3 cut(s) 1072, 2413, 2726
XagI CCTNNNNNAGG 2 cut(s) 224, 545
XapI RAATTY 5 cut(s) 835, 1079, 1113, 1221, 1892
XbaI TCTAGA 1 cut(s) 2897
XceI RCATGY 3 cut(s) 1575, 2250, 2820
XcmI CCANNNNNNNNNTGG 1 cut(s) 2687
XhoI CTCGAG 2 cut(s) 242, 2285
ZrmI AGTACT 4 cut(s) 182, 413, 2664, 3120
Zsp2I ATGCAT 3 cut(s) 1324, 1573, 2818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.