Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016126

Physical Location & Seq

Genomic Coordinates Forward (+)

5337420 .. 5341085

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGACTCTCTGCTCGCTAACTACGCCTCTTCTGACGAAGAAGAAGATCAACAACAGCCTTCCAAACCCGCAGCTTTGCCCTCAAAACCCAGCTCTGAACCTTCTTCCTCTTCCTCTCTCTTTTCTTCTCTACCCAAACCCAAACCCCAAACTTCCTCTCTCTTCCAGTCCCTTCCCCAACCGAAACAAACCCAAACTAAACCATCAAATCTTCGTCATGATGATGACGACGATGATGAAGACCAAGATTCAAAACCCACCTCCAAACCCTTGTTCTCTACGCTTCCTCCGCCCAAATCCCAAATCCCAAATAAACCCATTACCGATATCTCATCCTCAGACCGAAACCCTAAAAGGGTCGTCCAATTCAAGCCTCCCATTAGCTCTTATTCGATGAAGTCGTCCCAATTGGACGACGAAGATGACGATGATGATGAAGAAGAAGAAAGGCGAAGGCGAAAAGCGTCTGAATCCTCCGCTCAAACATCGTCCGGGAAGTTCATATTTTCTCTTCCAGCGCCTAGGTACTCCGCCACATTGGGTGCGAGTTCGGGTTTGGGTTCGGGCCGAAGAGCCATTCTTGAAATGGAATCAGTTGGTTCTAAAGTGAAGAGCGATGCAGGGGTGGATCAAAATGGTGCTAGTTACGAGAATCACCAATCAAGTATTGATCAGAATGCAGTTAACTATGAAAGCTATGGAGGTTATGAGACTTACCAATCTGGTATTGATCAAAATGCAGTTAACTATGAAAGCTATGGTGGTTATGAGAGTAACCAATCTGGCATTGATCAAAATGTGGATGTTGGGGTTCAATTACAGGCAGGAATTAGCGGTAGTGATGCTTCAAAATATGGTAGTTATGATGTCTATGGGAGTAATGCTGGTTATAGTGGTTATGGGCAGTACGGGAATGATTGGGTTGGTGGGTCTGAAACTGCAGCGCTGGCGATTCCAGGAACAGATGTAAGTGCGATTAAAGTGAGTAAAAAGAGAGGGAGGAATGAGGTGCCAACTGAAATAGTTGAGGTTAAGCAGGACGAGTTGATGAAGAATCGGCCAAGAGAGGACCAGGCCAAGTCAACCGGAATAGCTTTTGGGCCTTCTTATCAGCCTGTTTCAACTAAAGGGAAGCCTACAAAGCTGCATAAGAGGAAGCATCAGATTGGTTCTCTATACTTCGATATGAGGCAGAAGGAGATGGAACTTGCAGAGCGACGTTCAAAAGGCTTCCTCACAAAAGCTGAAACACAAGCCAAGTATGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 ko05211 map05202 map05211

Pfam Domains

Protein Families

PRCC

Protein Analysis

424

Amino Acids

46.21

Weight (kDa)

5.19

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19270
fragaria_vesca	FvH4_4g07150
malus_domestica	MD13G1239600.v1.1
prunus_persica	Prupe.1G074500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399301
rosa_laevigata	RLG00000009275
rosa_multiflora	Rmu_sc0003135.1_g000009 Rmu_sc0016554.1_g000003
rosa_rugosa	Rorug04G0016400
rosa_samantha	Rh4AG094100 Rh4BG091500 Rh4CG102300 Rh4DG086200 Rh7DG334700
rosa_wichuraiana	Rw4G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1009
AccBSI	CCGCTC	1 cut(s)	479
AciI	CCGC	5 cut(s)	69, 290, 477, 531, 834
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	1058
AfaI	GTAC	2 cut(s)	527, 908
AfeI	AGCGCT	1 cut(s)	945
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	7 cut(s)	252, 370, 584, 815, 849, 1122, 1224
AjnI	CCWGG	2 cut(s)	955, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	8 cut(s)	74, 93, 384, 696, 756, 1094, 1144, 1244
AluI	AGCT	8 cut(s)	74, 93, 384, 696, 756, 1094, 1144, 1244
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	636
Aor51HI	AGCGCT	1 cut(s)	945
AoxI	GGCC	4 cut(s)	565, 1058, 1074, 1100
ApeKI	GCWGC	3 cut(s)	71, 941, 1144
AspA2I	CCTAGG	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	520, 946
AspS9I	GGNCC	3 cut(s)	565, 1069, 1100
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	1069
AvrII	CCTAGG	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	1009
BarI	GAAGNNNNNNTAC	2 cut(s)	829, 861
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	83, 953, 1131
BccI	CCATC	3 cut(s)	211, 1195, 1260
BciT130I	CCWGG	2 cut(s)	957, 1073
BclI	TGATCA	3 cut(s)	670, 730, 790
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	522, 642
BfmI	CTRYAG	1 cut(s)	939
BfoI	RGCGCY	2 cut(s)	521, 947
BisI	GCNGC	3 cut(s)	72, 942, 1145
BlnI	CCTAGG	1 cut(s)	521
BlsI	GCNGC	3 cut(s)	73, 943, 1146
Bme1390I	CCNGG	3 cut(s)	493, 957, 1073
Bme18I	GGWCC	1 cut(s)	1069
BmgT120I	GGNCC	3 cut(s)	565, 1069, 1100
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	3 cut(s)	493, 957, 1073
BmsI	GCATC	3 cut(s)	607, 832, 1168
BpiI	GAAGAC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	521
BsaWI	WCCGGW	1 cut(s)	1085
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	957, 1073
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	3 cut(s)	332, 808, 1271
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	83, 953, 1131
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	4 cut(s)	567, 1060, 1076, 1102
BshNI	GGYRCC	1 cut(s)	1009
BsiSI	CCGG	2 cut(s)	492, 1086
BslFI	GGGAC	2 cut(s)	154, 388
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	2 cut(s)	154, 388
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	4 cut(s)	567, 1060, 1076, 1102
Bsp143I	GATC	5 cut(s)	46, 628, 670, 730, 790
BspACI	CCGC	5 cut(s)	69, 290, 477, 531, 834
BspANI	GGCC	4 cut(s)	567, 1060, 1076, 1102
BspCNI	CTCAG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	1011
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	1 cut(s)	636
BspQI	GCTCTTC	2 cut(s)	565, 605
BspT107I	GGYRCC	1 cut(s)	1009
BsrBI	CCGCTC	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	5 cut(s)	46, 628, 670, 730, 790
BssT1I	CCWWGG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	957, 1073
Bst6I	CTCTTC	6 cut(s)	34, 115, 167, 516, 565, 605
BstC8I	GCNNGC	2 cut(s)	15, 948
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	332, 808, 1271
BstH2I	RGCGCY	2 cut(s)	521, 947
BstHHI	GCGC	2 cut(s)	520, 946
BstKTI	GATC	5 cut(s)	49, 631, 673, 733, 793
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	5 cut(s)	46, 628, 670, 730, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 289, 947, 1141
BstNI	CCWGG	2 cut(s)	957, 1073
BstSCI	CCNGG	3 cut(s)	491, 955, 1071
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	3 cut(s)	83, 953, 1131
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	567, 1060, 1076, 1102
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	332, 808, 1271
Cac8I	GCNNGC	2 cut(s)	15, 948
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	2 cut(s)	520, 946
Cfr13I	GGNCC	3 cut(s)	565, 1069, 1100
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	526, 907
CviAII	CATG	1 cut(s)	218
CviQI	GTAC	2 cut(s)	526, 907
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	5 cut(s)	48, 630, 672, 732, 792
DpnII	GATC	5 cut(s)	46, 628, 670, 730, 790
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	6 cut(s)	34, 115, 167, 516, 565, 605
EarI	CTCTTC	6 cut(s)	34, 115, 167, 516, 565, 605
EciI	GGCGGA	2 cut(s)	279, 520
Eco130I	CCWWGG	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	1069
Eco47III	AGCGCT	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	955, 1071
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	221
FaqI	GGGAC	2 cut(s)	154, 388
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	3 cut(s)	670, 730, 790
Fnu4HI	GCNGC	3 cut(s)	72, 942, 1145
FokI	GGATG	2 cut(s)	319, 815
Fsp4HI	GCNGC	3 cut(s)	72, 942, 1145
FspBI	CTAG	2 cut(s)	522, 642
GlaI	GCGC	2 cut(s)	519, 945
GluI	GCNGC	3 cut(s)	72, 942, 1145
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	2 cut(s)	521, 947
HaeIII	GGCC	4 cut(s)	567, 1060, 1076, 1102
HapII	CCGG	2 cut(s)	492, 1086
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	2 cut(s)	520, 946
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	2 cut(s)	518, 944
HinP1I	GCGC	2 cut(s)	518, 944
HincII	GTYRAC	3 cut(s)	685, 745, 1083
HindII	GTYRAC	3 cut(s)	685, 745, 1083
HinfI	GANTC	7 cut(s)	5, 248, 470, 590, 652, 952, 1054
HpaI	GTTAAC	2 cut(s)	685, 745
HpaII	CCGG	2 cut(s)	492, 1086
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	3 cut(s)	685, 745, 1083
Hpy188I	TCNGA	7 cut(s)	34, 97, 340, 469, 675, 934, 1164
Hpy188III	TCNNGA	2 cut(s)	218, 581
Hpy8I	GTNNAC	3 cut(s)	685, 745, 1083
Hpy99I	CGWCG	3 cut(s)	233, 419, 1221
HpyAV	CCTTC	6 cut(s)	69, 111, 182, 447, 1113, 1189
HpyCH4IV	ACGT	1 cut(s)	1219
HpyCH4V	TGCA	6 cut(s)	620, 680, 740, 941, 1147, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 289, 947, 1141
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	1219
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	2 cut(s)	518, 944
Ksp22I	TGATCA	3 cut(s)	670, 730, 790
KspAI	GTTAAC	2 cut(s)	685, 745
Kzo9I	GATC	5 cut(s)	46, 628, 670, 730, 790
LguI	GCTCTTC	2 cut(s)	565, 605
Lsp1109I	GCAGC	3 cut(s)	83, 953, 1131
LweI	GCATC	3 cut(s)	607, 832, 1168
MaeI	CTAG	2 cut(s)	522, 642
MaeII	ACGT	1 cut(s)	1219
MaeIII	GTNAC	2 cut(s)	644, 773
MalI	GATC	5 cut(s)	48, 630, 672, 732, 792
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	5 cut(s)	46, 628, 670, 730, 790
MfeI	CAATTG	1 cut(s)	407
MluCI	AATT	4 cut(s)	365, 407, 815, 828
MseI	TTAA	4 cut(s)	684, 744, 978, 1032
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	492, 1086
MspR9I	CCNGG	3 cut(s)	493, 957, 1073
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	957, 1073
MwoI	GCNNNNNNNGC	4 cut(s)	23, 289, 947, 1141
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	5 cut(s)	46, 628, 670, 730, 790
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	1011
PagI	TCATGA	1 cut(s)	217
PciSI	GCTCTTC	2 cut(s)	565, 605
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 423
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	6 cut(s)	248, 470, 590, 652, 952, 1054
PfoI	TCCNGGA	2 cut(s)	491, 955
PkrI	GCNGC	3 cut(s)	73, 943, 1146
Psp6I	CCWGG	2 cut(s)	955, 1071
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	955, 1071
PspN4I	GGNNCC	1 cut(s)	1011
PspPI	GGNCC	3 cut(s)	565, 1069, 1100
PstI	CTGCAG	1 cut(s)	943
RsaI	GTAC	2 cut(s)	527, 908
RsaNI	GTAC	2 cut(s)	526, 907
RseI	CAYNNNNRTG	1 cut(s)	222
SapI	GCTCTTC	2 cut(s)	565, 605
SaqAI	TTAA	4 cut(s)	684, 744, 978, 1032
SatI	GCNGC	3 cut(s)	72, 942, 1145
Sau3AI	GATC	5 cut(s)	46, 628, 670, 730, 790
Sau96I	GGNCC	3 cut(s)	565, 1069, 1100
ScrFI	CCNGG	3 cut(s)	493, 957, 1073
SfaNI	GCATC	3 cut(s)	607, 832, 1168
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	1069
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	365, 407, 815, 828
SsiI	CCGC	5 cut(s)	69, 290, 477, 531, 834
SspMI	CTAG	2 cut(s)	522, 642
StyD4I	CCNGG	3 cut(s)	491, 955, 1071
StyI	CCWWGG	1 cut(s)	521
TaiI	ACGT	1 cut(s)	1222
TaqI	TCGA	2 cut(s)	392, 1182
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	365, 407, 815, 828
TfiI	GAWTC	6 cut(s)	248, 470, 590, 652, 952, 1054
Tru1I	TTAA	4 cut(s)	684, 744, 978, 1032
Tru9I	TTAA	4 cut(s)	684, 744, 978, 1032
TseI	GCWGC	3 cut(s)	71, 941, 1144
TspDTI	ATGAA	7 cut(s)	252, 410, 450, 490, 705, 765, 1064
VpaK11BI	GGWCC	1 cut(s)	1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmaJI	CCTAGG	1 cut(s)	521
XspI	CTAG	2 cut(s)	522, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.