Rh7DG334700

Mitotic checkpoint regulator, MAD2B-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016126
Physical Location & Seq
Forward (+)
43429826 .. 43433673
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG334700.1

Sequence Viewer

Length: 321 bp
ATGGGTGTGTCAGGTGATACTGGGGTTAAAGTGAGTGGGAAGAGGAGGAGGAATGATGTCCCAACTGAAATACTTGAGGTTAAGCAGGATGAGTTGATGAAGAATCGGCCGAGGGAGGACCAAGCCAAGGTGACCGGGATAGCTTTTGGGCCTTCTTACCAGCCTGTTTCGACGAAGGGGAAGCCGACAAAGCTGCATAAGAGGAAGCATCAGATTGGTTCTCTGTACTTTGATATGAAGCAGAAGGAGATGGAACTTCAGGAGCGGCGTTCAAGAGGCTTCCTTACAAAAGCTGAAACACAAGCCAAGTATGGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 ko05211 map05202 map05211
Pfam Domains
Protein Families
PRCC

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

10.04

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRCC PF10253 13 - 106 1.8e-14 Mitotic checkpoint regulator, MAD2B-interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19270
fragaria_vesca FvH4_4g07150
malus_domestica MD13G1239600.v1.1
prunus_persica Prupe.1G074500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399301
rosa_laevigata RLG00000009275
rosa_multiflora Rmu_sc0003135.1_g000009 Rmu_sc0016554.1_g000003
rosa_rugosa Rorug04G0016400
rosa_samantha Rh4AG094100 Rh4BG091500 Rh4CG102300 Rh4DG086200 Rh7DG334700
rosa_wichuraiana Rw4G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 265
AciI CCGC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 273
AluBI AGCT 3 cut(s) 143, 193, 293
AluI AGCT 3 cut(s) 143, 193, 293
AoxI GGCC 2 cut(s) 107, 149
ApeKI GCWGC 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 118, 149
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 26, 142
AvaII GGWCC 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 244, 309
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 1 cut(s) 136
BisI GCNGC 2 cut(s) 194, 266
BlsI GCNGC 2 cut(s) 195, 267
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 118, 149
BmrFI CCNGG 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 110, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 110, 126
BseGI GGATG 2 cut(s) 94, 320
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 58, 61
BseX3I CGGCCG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 2 cut(s) 109, 151
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 109, 151
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 109, 151
BsrBI CCGCTC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 110, 126
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 35
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 2 cut(s) 94, 320
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 107
BsuRI GGCC 2 cut(s) 109, 151
BtsCI GGATG 2 cut(s) 94, 320
Cfr13I GGNCC 2 cut(s) 118, 149
Csp6I GTAC 1 cut(s) 226
CviQI GTAC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 107
EagI CGGCCG 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 3 cut(s) 198, 236, 312
FaqI GGGAC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 194, 266
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 194, 266
GluI GCNGC 2 cut(s) 194, 266
HaeIII GGCC 2 cut(s) 109, 151
HapII CCGG 1 cut(s) 135
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 26, 142
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 260, 273
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 162, 169, 238
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 6 cut(s) 6, 71, 148, 173, 177, 245
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 130
MbiI CCGCTC 1 cut(s) 265
MboII GAAGA 2 cut(s) 52, 112
MnlI CCTC 8 cut(s) 36, 39, 42, 70, 105, 109, 195, 269
MseI TTAA 2 cut(s) 27, 81
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 195, 267
PspEI GGTNACC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 118, 149
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 27, 81
SatI GCNGC 2 cut(s) 194, 266
Sau96I GGNCC 2 cut(s) 118, 149
ScrFI CCNGG 1 cut(s) 136
SetI ASST 6 cut(s) 16, 81, 132, 145, 195, 295
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SsiI CCGC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 170
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 27, 81
Tru9I TTAA 2 cut(s) 27, 81
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 113, 251
VpaK11BI GGWCC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.