Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48810 |
| fragaria_vesca | FvH4_4g20630 |
| malus_domestica | MD13G1149200.v1.1 |
| prunus_persica | Prupe.1G113200_v2.0.a1 |
| pyrus_communis | pycom13g12840 |
| rosa_chinensis | RchiOBHm_Chr4g0425991 RchiOBHm_Chr4g0426031 |
| rosa_laevigata | RLG00000007323 RLG00000007325 |
| rosa_multiflora | Rmu_ssc0000281.1_g000016 Rmu_ssc0000281.1_g000018 Rmu_ssc0000281.1_g000020 |
| rosa_roxburghii | Rroxscaffold_5G00368000 |
| rosa_rugosa | Rorug04G0207900 Rorug04G0208100 |
| rosa_samantha | Rh4AG264900 Rh4BG270800 Rh4BG271100 Rh4CG283400 Rh4CG283700 Rh4CG283900 Rh4DG267400 |
| rosa_wichuraiana | Rw4G022880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 753 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 673 |
| Acc36I | ACCTGC | 1 cut(s) | 1289 |
| AccBSI | CCGCTC | 1 cut(s) | 596 |
| AccI | GTMKAC | 1 cut(s) | 551 |
| AccII | CGCG | 1 cut(s) | 653 |
| AciI | CCGC | 4 cut(s) | 596, 653, 1772, 1924 |
| AclI | AACGTT | 1 cut(s) | 894 |
| AclWI | GGATC | 2 cut(s) | 728, 1895 |
| AcsI | RAATTY | 3 cut(s) | 422, 1306, 1579 |
| AcuI | CTGAAG | 2 cut(s) | 178, 1374 |
| AfaI | GTAC | 2 cut(s) | 242, 296 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1901 |
| AhlI | ACTAGT | 1 cut(s) | 1070 |
| AjnI | CCWGG | 1 cut(s) | 710 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 70, 102, 1408, 1440, 1521, 1553 |
| Alw21I | GWGCWC | 3 cut(s) | 66, 168, 607 |
| Alw26I | GTCTC | 3 cut(s) | 1091, 1220, 1511 |
| AlwI | GGATC | 2 cut(s) | 728, 1895 |
| AoxI | GGCC | 2 cut(s) | 246, 393 |
| ApeKI | GCWGC | 5 cut(s) | 28, 330, 1149, 1645, 1786 |
| ApoI | RAATTY | 3 cut(s) | 422, 1306, 1579 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 426, 458 |
| AseI | ATTAAT | 2 cut(s) | 501, 870 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 404, 488, 1523 |
| AspS9I | GGNCC | 1 cut(s) | 198 |
| AsuHPI | GGTGA | 4 cut(s) | 449, 667, 1121, 1528 |
| AsuII | TTCGAA | 1 cut(s) | 1527 |
| AvaII | GGWCC | 1 cut(s) | 198 |
| BaeGI | GKGCMC | 1 cut(s) | 1053 |
| BauI | CACGAG | 1 cut(s) | 161 |
| BbsI | GAAGAC | 1 cut(s) | 1805 |
| Bbv12I | GWGCWC | 3 cut(s) | 66, 168, 607 |
| BbvI | GCAGC | 5 cut(s) | 15, 317, 1136, 1657, 1798 |
| BceAI | ACGGC | 1 cut(s) | 1242 |
| BciT130I | CCWGG | 1 cut(s) | 712 |
| BclI | TGATCA | 1 cut(s) | 357 |
| BcoDI | GTCTC | 3 cut(s) | 1091, 1220, 1511 |
| BcuI | ACTAGT | 1 cut(s) | 1070 |
| BfaI | CTAG | 2 cut(s) | 989, 1071 |
| BfmI | CTRYAG | 2 cut(s) | 409, 669 |
| BfuAI | ACCTGC | 1 cut(s) | 1289 |
| BisI | GCNGC | 6 cut(s) | 29, 331, 1150, 1646, 1773, 1787 |
| BlpI | GCTNAGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 6 cut(s) | 30, 332, 1151, 1647, 1774, 1788 |
| Bme1390I | CCNGG | 1 cut(s) | 712 |
| Bme18I | GGWCC | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 1 cut(s) | 198 |
| BmiI | GGNNCC | 5 cut(s) | 111, 269, 491, 540, 1956 |
| BmrFI | CCNGG | 1 cut(s) | 712 |
| BmsI | GCATC | 5 cut(s) | 457, 1102, 1229, 1428, 1675 |
| BpiI | GAAGAC | 1 cut(s) | 1805 |
| BpmI | CTGGAG | 1 cut(s) | 630 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 387 |
| Bpu14I | TTCGAA | 1 cut(s) | 1527 |
| BsaI | GGTCTC | 2 cut(s) | 1091, 1511 |
| BsaJI | CCNNGG | 4 cut(s) | 711, 1249, 1632, 1854 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 259, 289 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1901 |
| Bse1I | ACTGG | 2 cut(s) | 1809, 1974 |
| Bse3DI | GCAATG | 2 cut(s) | 470, 1993 |
| BseBI | CCWGG | 1 cut(s) | 712 |
| BseDI | CCNNGG | 4 cut(s) | 711, 1249, 1632, 1854 |
| BseGI | GGATG | 8 cut(s) | 289, 472, 540, 604, 644, 944, 1297, 1575 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1901 |
| BseMI | GCAATG | 2 cut(s) | 470, 1993 |
| BseMII | CTCAG | 4 cut(s) | 327, 378, 1215, 1763 |
| BseNI | ACTGG | 2 cut(s) | 1809, 1974 |
| BseRI | GAGGAG | 2 cut(s) | 353, 809 |
| BseSI | GKGCMC | 1 cut(s) | 1053 |
| BseXI | GCAGC | 5 cut(s) | 15, 317, 1136, 1657, 1798 |
| BseYI | CCCAGC | 3 cut(s) | 113, 377, 1895 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| Bsh1236I | CGCG | 1 cut(s) | 653 |
| BshFI | GGCC | 2 cut(s) | 248, 395 |
| BsiHKAI | GWGCWC | 3 cut(s) | 66, 168, 607 |
| BsiWI | CGTACG | 1 cut(s) | 240 |
| BslFI | GGGAC | 1 cut(s) | 336 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1901 |
| BsmAI | GTCTC | 3 cut(s) | 1091, 1220, 1511 |
| BsmFI | GGGAC | 1 cut(s) | 336 |
| BsnI | GGCC | 2 cut(s) | 248, 395 |
| Bso31I | GGTCTC | 2 cut(s) | 1091, 1511 |
| Bsp119I | TTCGAA | 1 cut(s) | 1527 |
| Bsp1286I | GDGCHC | 4 cut(s) | 66, 168, 607, 1053 |
| Bsp143I | GATC | 3 cut(s) | 357, 733, 1887 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 387 |
| Bsp19I | CCATGG | 2 cut(s) | 1249, 1854 |
| BspACI | CCGC | 4 cut(s) | 596, 653, 1772, 1924 |
| BspANI | GGCC | 2 cut(s) | 248, 395 |
| BspCNI | CTCAG | 4 cut(s) | 328, 379, 1216, 1762 |
| BspFNI | CGCG | 1 cut(s) | 653 |
| BspLI | GGNNCC | 5 cut(s) | 111, 269, 491, 540, 1956 |
| BspMI | ACCTGC | 1 cut(s) | 1289 |
| BspPI | GGATC | 2 cut(s) | 728, 1895 |
| BspT104I | TTCGAA | 1 cut(s) | 1527 |
| BspTNI | GGTCTC | 2 cut(s) | 1091, 1511 |
| BsrBI | CCGCTC | 1 cut(s) | 596 |
| BsrDI | GCAATG | 2 cut(s) | 470, 1993 |
| BsrI | ACTGG | 2 cut(s) | 1809, 1974 |
| BssECI | CCNNGG | 4 cut(s) | 711, 1249, 1632, 1854 |
| BssMI | GATC | 3 cut(s) | 357, 733, 1887 |
| BssNAI | GTATAC | 1 cut(s) | 552 |
| BssSI | CACGAG | 1 cut(s) | 161 |
| BssT1I | CCWWGG | 3 cut(s) | 1249, 1632, 1854 |
| Bst1107I | GTATAC | 1 cut(s) | 552 |
| Bst2BI | CACGAG | 1 cut(s) | 161 |
| Bst2UI | CCWGG | 1 cut(s) | 712 |
| Bst4CI | ACNGT | 6 cut(s) | 442, 670, 1375, 1505, 1640, 1763 |
| Bst6I | CTCTTC | 1 cut(s) | 1514 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 783 |
| BstBI | TTCGAA | 1 cut(s) | 1527 |
| BstC8I | GCNNGC | 3 cut(s) | 375, 393, 720 |
| BstDEI | CTNAG | 5 cut(s) | 336, 387, 476, 1224, 1749 |
| BstDSI | CCRYGG | 2 cut(s) | 1249, 1854 |
| BstEII | GGTNACC | 1 cut(s) | 1205 |
| BstF5I | GGATG | 8 cut(s) | 289, 472, 540, 604, 644, 944, 1297, 1575 |
| BstFNI | CGCG | 1 cut(s) | 653 |
| BstKTI | GATC | 3 cut(s) | 360, 736, 1890 |
| BstMAI | GTCTC | 3 cut(s) | 1091, 1220, 1511 |
| BstMBI | GATC | 3 cut(s) | 357, 733, 1887 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 383, 392, 602, 783, 917 |
| BstNI | CCWGG | 1 cut(s) | 712 |
| BstPI | GGTNACC | 1 cut(s) | 1205 |
| BstSCI | CCNGG | 1 cut(s) | 710 |
| BstSFI | CTRYAG | 2 cut(s) | 409, 669 |
| BstSLI | GKGCMC | 1 cut(s) | 1053 |
| BstUI | CGCG | 1 cut(s) | 653 |
| BstV1I | GCAGC | 5 cut(s) | 15, 317, 1136, 1657, 1798 |
| BstV2I | GAAGAC | 1 cut(s) | 1805 |
| BstX2I | RGATCY | 1 cut(s) | 1887 |
| BstYI | RGATCY | 1 cut(s) | 1887 |
| BstZ17I | GTATAC | 1 cut(s) | 552 |
| BsuRI | GGCC | 2 cut(s) | 248, 395 |
| BtgI | CCRYGG | 2 cut(s) | 1249, 1854 |
| BtgZI | GCGATG | 1 cut(s) | 1425 |
| BtsCI | GGATG | 8 cut(s) | 289, 472, 540, 604, 644, 944, 1297, 1575 |
| BtsI | GCAGTG | 1 cut(s) | 1740 |
| BtsIMutI | CAGTG | 1 cut(s) | 1740 |
| BveI | ACCTGC | 1 cut(s) | 1289 |
| Cac8I | GCNNGC | 3 cut(s) | 375, 393, 720 |
| Cfr13I | GGNCC | 1 cut(s) | 198 |
| CseI | GACGC | 3 cut(s) | 27, 165, 659 |
| Csp6I | GTAC | 2 cut(s) | 241, 295 |
| CviAII | CATG | 9 cut(s) | 250, 1004, 1082, 1130, 1250, 1285, 1460, 1855, 1908 |
| CviQI | GTAC | 2 cut(s) | 241, 295 |
| DdeI | CTNAG | 5 cut(s) | 336, 387, 476, 1224, 1749 |
| DpnI | GATC | 3 cut(s) | 359, 735, 1889 |
| DpnII | GATC | 3 cut(s) | 357, 733, 1887 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 673 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 1514 |
| EarI | CTCTTC | 1 cut(s) | 1514 |
| Eco130I | CCWWGG | 3 cut(s) | 1249, 1632, 1854 |
| Eco147I | AGGCCT | 1 cut(s) | 395 |
| Eco31I | GGTCTC | 2 cut(s) | 1091, 1511 |
| Eco47I | GGWCC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 2 cut(s) | 178, 1374 |
| Eco91I | GGTNACC | 1 cut(s) | 1205 |
| EcoO65I | GGTNACC | 1 cut(s) | 1205 |
| EcoRII | CCWGG | 1 cut(s) | 710 |
| EcoT14I | CCWWGG | 3 cut(s) | 1249, 1632, 1854 |
| EcoT22I | ATGCAT | 2 cut(s) | 472, 1993 |
| ErhI | CCWWGG | 3 cut(s) | 1249, 1632, 1854 |
| FaeI | CATG | 9 cut(s) | 253, 1007, 1085, 1133, 1253, 1288, 1463, 1858, 1911 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| FaqI | GGGAC | 1 cut(s) | 336 |
| FatI | CATG | 9 cut(s) | 249, 1003, 1081, 1129, 1249, 1284, 1459, 1854, 1907 |
| FbaI | TGATCA | 1 cut(s) | 357 |
| FblI | GTMKAC | 1 cut(s) | 551 |
| Fnu4HI | GCNGC | 6 cut(s) | 29, 331, 1150, 1646, 1773, 1787 |
| FokI | GGATG | 8 cut(s) | 296, 479, 547, 611, 651, 951, 1304, 1582 |
| Fsp4HI | GCNGC | 6 cut(s) | 29, 331, 1150, 1646, 1773, 1787 |
| FspBI | CTAG | 2 cut(s) | 989, 1071 |
| GluI | GCNGC | 6 cut(s) | 29, 331, 1150, 1646, 1773, 1787 |
| GsaI | CCCAGC | 3 cut(s) | 117, 381, 1899 |
| GsuI | CTGGAG | 1 cut(s) | 630 |
| HaeIII | GGCC | 2 cut(s) | 248, 395 |
| HgaI | GACGC | 3 cut(s) | 27, 165, 659 |
| Hin1II | CATG | 9 cut(s) | 253, 1007, 1085, 1133, 1253, 1288, 1463, 1858, 1911 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 3 cut(s) | 899, 999, 1524 |
| HphI | GGTGA | 4 cut(s) | 449, 667, 1121, 1528 |
| Hpy166II | GTNNAC | 3 cut(s) | 40, 552, 1519 |
| Hpy188I | TCNGA | 6 cut(s) | 337, 507, 883, 1077, 1225, 1752 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 213, 445, 493, 647, 989, 1037, 1435 |
| Hpy8I | GTNNAC | 3 cut(s) | 40, 552, 1519 |
| Hpy99I | CGWCG | 1 cut(s) | 181 |
| HpyAV | CCTTC | 5 cut(s) | 8, 565, 986, 1349, 1877 |
| HpyCH4III | ACNGT | 6 cut(s) | 442, 670, 1375, 1505, 1640, 1763 |
| HpyCH4IV | ACGT | 2 cut(s) | 239, 894 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 383, 392, 602, 783, 917 |
| HpyF3I | CTNAG | 5 cut(s) | 336, 387, 476, 1224, 1749 |
| HpySE526I | ACGT | 2 cut(s) | 239, 894 |
| Hsp92II | CATG | 9 cut(s) | 253, 1007, 1085, 1133, 1253, 1288, 1463, 1858, 1911 |
| Ksp22I | TGATCA | 1 cut(s) | 357 |
| Kzo9I | GATC | 3 cut(s) | 357, 733, 1887 |
| LmnI | GCTCC | 5 cut(s) | 26, 267, 538, 715, 1954 |
| Lsp1109I | GCAGC | 5 cut(s) | 15, 317, 1136, 1657, 1798 |
| LweI | GCATC | 5 cut(s) | 457, 1102, 1229, 1428, 1675 |
| MaeI | CTAG | 2 cut(s) | 989, 1071 |
| MaeII | ACGT | 2 cut(s) | 239, 894 |
| MaeIII | GTNAC | 3 cut(s) | 1205, 1375, 1585 |
| MalI | GATC | 3 cut(s) | 359, 735, 1889 |
| MbiI | CCGCTC | 1 cut(s) | 596 |
| MboI | GATC | 3 cut(s) | 357, 733, 1887 |
| MboII | GAAGA | 7 cut(s) | 535, 643, 716, 1501, 1541, 1805, 1856 |
| MflI | RGATCY | 1 cut(s) | 1887 |
| MhlI | GDGCHC | 4 cut(s) | 66, 168, 607, 1053 |
| MlyI | GAGTC | 2 cut(s) | 908, 1008 |
| MmeI | TCCRAC | 2 cut(s) | 673, 1932 |
| Mph1103I | ATGCAT | 2 cut(s) | 472, 1993 |
| MroXI | GAANNNNTTC | 3 cut(s) | 404, 488, 1523 |
| MseI | TTAA | 7 cut(s) | 129, 155, 236, 501, 870, 1383, 1548 |
| MslI | CAYNNNNRTG | 2 cut(s) | 254, 353 |
| MspR9I | CCNGG | 1 cut(s) | 712 |
| MvaI | CCWGG | 1 cut(s) | 712 |
| MvnI | CGCG | 1 cut(s) | 653 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 383, 392, 602, 783, 917 |
| NcoI | CCATGG | 2 cut(s) | 1249, 1854 |
| NdeII | GATC | 3 cut(s) | 357, 733, 1887 |
| NlaIII | CATG | 9 cut(s) | 253, 1007, 1085, 1133, 1253, 1288, 1463, 1858, 1911 |
| NlaIV | GGNNCC | 5 cut(s) | 111, 269, 491, 540, 1956 |
| NsiI | ATGCAT | 2 cut(s) | 472, 1993 |
| NspV | TTCGAA | 1 cut(s) | 1527 |
| PceI | AGGCCT | 1 cut(s) | 395 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1033 |
| PdmI | GAANNNNTTC | 3 cut(s) | 404, 488, 1523 |
| PfeI | GAWTC | 1 cut(s) | 1524 |
| Pfl23II | CGTACG | 1 cut(s) | 240 |
| PkrI | GCNGC | 6 cut(s) | 30, 332, 1151, 1647, 1774, 1788 |
| PleI | GAGTC | 2 cut(s) | 907, 1007 |
| PpsI | GAGTC | 2 cut(s) | 907, 1007 |
| PshBI | ATTAAT | 2 cut(s) | 501, 870 |
| PsiI | TTATAA | 1 cut(s) | 753 |
| Psp1406I | AACGTT | 1 cut(s) | 894 |
| Psp6I | CCWGG | 1 cut(s) | 710 |
| PspEI | GGTNACC | 1 cut(s) | 1205 |
| PspFI | CCCAGC | 3 cut(s) | 113, 377, 1895 |
| PspGI | CCWGG | 1 cut(s) | 710 |
| PspLI | CGTACG | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 5 cut(s) | 111, 269, 491, 540, 1956 |
| PspPI | GGNCC | 1 cut(s) | 198 |
| PsuI | RGATCY | 1 cut(s) | 1887 |
| RsaI | GTAC | 2 cut(s) | 242, 296 |
| RsaNI | GTAC | 2 cut(s) | 241, 295 |
| RseI | CAYNNNNRTG | 2 cut(s) | 254, 353 |
| SaqAI | TTAA | 7 cut(s) | 129, 155, 236, 501, 870, 1383, 1548 |
| SatI | GCNGC | 6 cut(s) | 29, 331, 1150, 1646, 1773, 1787 |
| Sau3AI | GATC | 3 cut(s) | 357, 733, 1887 |
| Sau96I | GGNCC | 1 cut(s) | 198 |
| SchI | GAGTC | 2 cut(s) | 908, 1008 |
| ScrFI | CCNGG | 1 cut(s) | 712 |
| SduI | GDGCHC | 4 cut(s) | 66, 168, 607, 1053 |
| SfaNI | GCATC | 5 cut(s) | 457, 1102, 1229, 1428, 1675 |
| SfcI | CTRYAG | 2 cut(s) | 409, 669 |
| SfuI | TTCGAA | 1 cut(s) | 1527 |
| SinI | GGWCC | 1 cut(s) | 198 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 254, 353 |
| SpeI | ACTAGT | 1 cut(s) | 1070 |
| SseBI | AGGCCT | 1 cut(s) | 395 |
| SsiI | CCGC | 4 cut(s) | 596, 653, 1772, 1924 |
| SspI | AATATT | 2 cut(s) | 952, 1057 |
| SspMI | CTAG | 2 cut(s) | 989, 1071 |
| StuI | AGGCCT | 1 cut(s) | 395 |
| StyD4I | CCNGG | 1 cut(s) | 710 |
| StyI | CCWWGG | 3 cut(s) | 1249, 1632, 1854 |
| TaaI | ACNGT | 6 cut(s) | 442, 670, 1375, 1505, 1640, 1763 |
| TaiI | ACGT | 2 cut(s) | 242, 897 |
| TaqI | TCGA | 3 cut(s) | 629, 1527, 1835 |
| TauI | GCSGC | 1 cut(s) | 1775 |
| TfiI | GAWTC | 1 cut(s) | 1524 |
| Tru1I | TTAA | 7 cut(s) | 129, 155, 236, 501, 870, 1383, 1548 |
| Tru9I | TTAA | 7 cut(s) | 129, 155, 236, 501, 870, 1383, 1548 |
| TscAI | CASTG | 1 cut(s) | 1747 |
| TseI | GCWGC | 5 cut(s) | 28, 330, 1149, 1645, 1786 |
| TspDTI | ATGAA | 9 cut(s) | 326, 337, 536, 1020, 1259, 1307, 1381, 1856, 1863 |
| TspRI | CASTG | 1 cut(s) | 1747 |
| VpaK11BI | GGWCC | 1 cut(s) | 198 |
| VspI | ATTAAT | 2 cut(s) | 501, 870 |
| XapI | RAATTY | 3 cut(s) | 422, 1306, 1579 |
| XbaI | TCTAGA | 1 cut(s) | 988 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1010 |
| XmiI | GTMKAC | 1 cut(s) | 551 |
| XmnI | GAANNNNTTC | 3 cut(s) | 404, 488, 1523 |
| XspI | CTAG | 2 cut(s) | 989, 1071 |
| Zsp2I | ATGCAT | 2 cut(s) | 472, 1993 |