Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0008613

Physical Location & Seq

Genomic Coordinates Reverse (-)

59025 .. 60654

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgcaggtttttagcaacatgctaacaaggggaaagcctgatgccattacatataacatactgatatatttctattgcaagcaaggcaggataaagactgctattcagcttttcaacagtactggtgcagcaaaggagtggtgcccggatgtaatagcttacactagtcttctaagtgggatttgtaactcggtaggtctagaccaggccatggtttatcttgataagatgataagtgaagcagcgcgcttaggtcatttggggccaatctacatactggatgatattcgatcttcgtggaggttcttcgtgaaggataagaaccatgatctccgattttcttgtaaggaatcgtctgtttatcacttaatccaacctgttgatgaaacgacggatgctaatcttaacataagcgtctgccgtgacatcctgtttgctttcctatgccatgagcaagccccaggactaacagcacggtataacactgaacagcataagggtgcaaaggccggtgcacccgtgcaccaggctagcttggaaggtgctcatacattgaaatcctgttacctaagtttcacatgctgtgacgcttggccttatggtgactttgtaatggcaattgtgctccttgtagactatggtgatgcaaaatggttacggcagcagaaattactgattgaaatagacgggattgttagccctcaagaaacatgtgctgtagccattagaatatcgtcggcatttgcaagaagtcttgtgattaacaacaatccgcaggctgatgtcggcatttgcaagaagtcttgtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

270

Amino Acids

30.06

Weight (kDa)

6.64

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48810
fragaria_vesca	FvH4_4g20630
malus_domestica	MD13G1149200.v1.1
prunus_persica	Prupe.1G113200_v2.0.a1
pyrus_communis	pycom13g12840
rosa_chinensis	RchiOBHm_Chr4g0425991 RchiOBHm_Chr4g0426031
rosa_laevigata	RLG00000007323 RLG00000007325
rosa_multiflora	Rmu_ssc0000281.1_g000016 Rmu_ssc0000281.1_g000018 Rmu_ssc0000281.1_g000020
rosa_roxburghii	Rroxscaffold_5G00368000
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG264900 Rh4BG270800 Rh4BG271100 Rh4CG283400 Rh4CG283700 Rh4CG283900 Rh4DG267400
rosa_wichuraiana	Rw4G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	773
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	710
AgsI	TTSAA	3 cut(s)	115, 556, 680
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	3 cut(s)	204, 460, 525
AluBI	AGCT	3 cut(s)	109, 158, 534
AluI	AGCT	3 cut(s)	109, 158, 534
Alw21I	GWGCWC	4 cut(s)	517, 525, 547, 627
Alw44I	GTGCAC	2 cut(s)	513, 521
AoxI	GGCC	4 cut(s)	207, 263, 507, 593
ApaLI	GTGCAC	2 cut(s)	513, 521
ApeKI	GCWGC	3 cut(s)	128, 242, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspLEI	GCGC	2 cut(s)	247, 249
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	614, 653
AsuNHI	GCTAGC	1 cut(s)	530
BaeGI	GKGCMC	3 cut(s)	146, 517, 525
BanI	GGYRCC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	4 cut(s)	517, 525, 547, 627
BbvI	GCAGC	3 cut(s)	140, 254, 673
BceAI	ACGGC	2 cut(s)	405, 674
BciT130I	CCWGG	3 cut(s)	206, 462, 527
BcnI	CCSGG	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	3 cut(s)	165, 200, 531
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	3 cut(s)	129, 243, 662
BlsI	GCNGC	3 cut(s)	130, 244, 663
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	4 cut(s)	146, 206, 462, 527
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	143, 264
BmrFI	CCNGG	4 cut(s)	146, 206, 462, 527
BmsI	GCATC	3 cut(s)	31, 385, 634
BmtI	GCTAGC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	210, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	127, 282
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	206, 462, 527
BseDI	CCNNGG	2 cut(s)	210, 460
BseGI	GGATG	4 cut(s)	154, 286, 400, 426
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	127, 282
BsePI	GCGCGC	1 cut(s)	245
BseSI	GKGCMC	3 cut(s)	146, 517, 525
BseXI	GCAGC	3 cut(s)	140, 254, 673
BsgI	GTGCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	209, 265, 509, 595
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	4 cut(s)	517, 525, 547, 627
BsiSI	CCGG	2 cut(s)	146, 510
BslI	CCNNNNNNNGG	1 cut(s)	211
BsnI	GGCC	4 cut(s)	209, 265, 509, 595
Bsp1286I	GDGCHC	5 cut(s)	146, 517, 525, 547, 627
Bsp143I	GATC	2 cut(s)	290, 328
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	773
BspANI	GGCC	4 cut(s)	209, 265, 509, 595
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	143, 264
BspOI	GCTAGC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	127, 282
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	210, 460
BssHII	GCGCGC	1 cut(s)	245
BssMI	GATC	2 cut(s)	290, 328
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	206, 462, 527
Bst4CI	ACNGT	2 cut(s)	119, 477
BstC8I	GCNNGC	5 cut(s)	80, 247, 456, 532, 777
BstDEI	CTNAG	3 cut(s)	173, 250, 569
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	154, 286, 400, 426
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	2 cut(s)	247, 249
BstKTI	GATC	2 cut(s)	293, 331
BstMBI	GATC	2 cut(s)	290, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	3 cut(s)	206, 462, 527
BstNSI	RCATGY	3 cut(s)	22, 582, 714
BstSCI	CCNGG	4 cut(s)	144, 204, 460, 525
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	3 cut(s)	146, 517, 525
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	140, 254, 673
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	209, 265, 509, 595
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	154, 286, 400, 426
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	5 cut(s)	80, 247, 456, 532, 777
CfoI	GCGC	2 cut(s)	247, 249
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	2 cut(s)	403, 596
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	6 cut(s)	19, 211, 326, 449, 579, 711
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	173, 250, 569
DpnI	GATC	2 cut(s)	292, 330
DpnII	GATC	2 cut(s)	290, 328
Eco130I	CCWWGG	1 cut(s)	210
EcoRII	CCWGG	3 cut(s)	204, 460, 525
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	6 cut(s)	22, 214, 329, 452, 582, 714
FatI	CATG	6 cut(s)	18, 210, 325, 448, 578, 710
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	129, 243, 662
FokI	GGATG	4 cut(s)	161, 293, 407, 413
Fsp4HI	GCNGC	3 cut(s)	129, 243, 662
FspBI	CTAG	3 cut(s)	165, 200, 531
GlaI	GCGC	2 cut(s)	246, 248
GluI	GCNGC	3 cut(s)	129, 243, 662
HaeIII	GGCC	4 cut(s)	209, 265, 509, 595
HapII	CCGG	2 cut(s)	146, 510
HgaI	GACGC	2 cut(s)	403, 596
HhaI	GCGC	2 cut(s)	247, 249
Hin1II	CATG	6 cut(s)	22, 214, 329, 452, 582, 714
Hin6I	GCGC	2 cut(s)	245, 247
HinP1I	GCGC	2 cut(s)	245, 247
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	2 cut(s)	146, 510
HphI	GGTGA	2 cut(s)	614, 653
Hpy166II	GTNNAC	3 cut(s)	515, 523, 634
Hpy188I	TCNGA	1 cut(s)	335
Hpy188III	TCNNGA	4 cut(s)	200, 221, 310, 704
Hpy8I	GTNNAC	3 cut(s)	515, 523, 634
Hpy99I	CGWCG	2 cut(s)	394, 739
HpyAV	CCTTC	2 cut(s)	307, 533
HpyCH4III	ACNGT	2 cut(s)	119, 477
HpyCH4V	TGCA	9 cut(s)	4, 78, 128, 503, 515, 523, 647, 746, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	3 cut(s)	173, 250, 569
Hsp92II	CATG	6 cut(s)	22, 214, 329, 452, 582, 714
HspAI	GCGC	2 cut(s)	245, 247
Kzo9I	GATC	2 cut(s)	290, 328
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	3 cut(s)	140, 254, 673
LweI	GCATC	3 cut(s)	31, 385, 634
MaeI	CTAG	3 cut(s)	165, 200, 531
MaeIII	GTNAC	6 cut(s)	185, 422, 563, 584, 602, 654
MalI	GATC	2 cut(s)	292, 330
MboI	GATC	2 cut(s)	290, 328
MboII	GAAGA	3 cut(s)	161, 285, 298
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	5 cut(s)	146, 517, 525, 547, 627
MluCI	AATT	2 cut(s)	618, 668
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	294, 711
MseI	TTAA	4 cut(s)	368, 405, 762, 811
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	2 cut(s)	146, 510
MspR9I	CCNGG	4 cut(s)	146, 206, 462, 527
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	3 cut(s)	206, 462, 527
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	290, 328
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	6 cut(s)	22, 214, 329, 452, 582, 714
NlaIV	GGNNCC	2 cut(s)	143, 264
NmuCI	GTSAC	3 cut(s)	422, 584, 602
NspI	RCATGY	3 cut(s)	22, 582, 714
PauI	GCGCGC	1 cut(s)	245
PciI	ACATGT	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	130, 244, 663
PscI	ACATGT	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	204, 460, 525
PspGI	CCWGG	3 cut(s)	204, 460, 525
PspN4I	GGNNCC	2 cut(s)	143, 264
PspPI	GGNCC	1 cut(s)	263
PteI	GCGCGC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	368, 405, 762, 811
SatI	GCNGC	3 cut(s)	129, 243, 662
Sau3AI	GATC	2 cut(s)	290, 328
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	121
ScrFI	CCNGG	4 cut(s)	146, 206, 462, 527
SduI	GDGCHC	5 cut(s)	146, 517, 525, 547, 627
SfaNI	GCATC	3 cut(s)	31, 385, 634
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	2 cut(s)	618, 668
SsiI	CCGC	1 cut(s)	773
SspMI	CTAG	3 cut(s)	165, 200, 531
StyD4I	CCNGG	4 cut(s)	144, 204, 460, 525
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	119, 477
TaqI	TCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	618, 668
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	368, 405, 762, 811
Tru9I	TTAA	4 cut(s)	368, 405, 762, 811
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	3 cut(s)	422, 584, 602
TseI	GCWGC	3 cut(s)	128, 242, 661
Tsp45I	GTSAC	3 cut(s)	422, 584, 602
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	211
VneI	GTGCAC	2 cut(s)	513, 521
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	3 cut(s)	22, 582, 714
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	3 cut(s)	165, 200, 531
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.