Rh4CG283400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0008613
Physical Location & Seq
Forward (+)
54063619 .. 54065610
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG283400.1

Sequence Viewer

Length: 1992 bp
ATGTATCTGAAAGAAGGATGCTCCTTGCTGCTAAAACTTCACAAACCCACAAGACCCTTTGTGCTCAGCACAAACCCAGTTCCCAGCTTAAACCCTAAACCCCAAATTGCACCCACCCAAATTCTCAAAGAGTCTGATGTGTTGCAGAGGTTGAAGCATGAGCCCCAATTGGGTTTGGCATTGGAATATTTCAGGTCCATTGCCAACTCCAGAGCTTTCAAACACACCCAATTGACCTACCAGGCCATGATTGAGAAGCTTGGGAGCCAATGTGAAATGGATGGTGTGCAGTACTTGATGCACCAAATGAAATTGGAGGGGGTTGGTTGCTCTGAGGAGCTGTTTATAAGTGTGGTGAAGTCTTACAGGCGAGCTGGGTTGGCTGAGCAGGCATTGAAGATGTTCTATAGGATAAACGAATTCGGGTGCAAACCCACTGTGAAGATTTACAATCACTTGTTGGATGCATTGCTTTGCGAGAATAGGTTTCAGATGATCAATCCCATATATGGTAACATGAAGAAAGATGGGATGGAGCCGAATGTGTTTACGTATAACATTCTGTTGAAGGCATTGTGTAAGAATGATAGGGTGGATGGTGCACACAAGTTGCTTGTGGAAATGTCTAAGAAGGGATGTTGTCCCGACACGGTGAGCTATACGACTGTAGTGTCTACATTGTGTAGGCTTGGGAAGGTAGATGAAGCGAGGGAGCTTGCTTGTAGATTCGAACCCAATGTGGCTGTTTATAATGCTTTGGTAAATGGGTTGTGCAAGGAGTCCAAATTTGAAGAGGCATTGGCATTGCTGGTTGAAATGGCGGGTAAGGGAATAGACCCTAATGTCATTACATACTCGACGATTATTAGTTCTTTTTCTGATATGAGGAATGTTGAGTCTGCTCTTGCTGTTTTGGCGAAAATGTTTGTGAGGGGATGTAGGCCTAACGTTCACACCTTTACTTCCTTGATAAAGGGTTATTTTATGGAAGGCAGAGTTAGTGAAGCTCTTGACTTGTGGAACCGCATGGTTCGTGAGGGATTTGAGCCCAATGTTGTTGCATATACAACTGTTATACACGGTCTCTGCTCTGTTGGGAATATGCGTGAAGCTGTATCTGTTTTACATGAGATGGAGATAAAAGGTTGCTCTCCAAATGTGAGCACATATAGCACTCTTATTGATGGGTTTGCAAAAGCTGGCAACCTTGTTGGTGCATCGGAGACTTGGAACAATATGATGAGCCGTGGTTGCCGTCCTAATGTCATAGCATATACGTGCATGGTGGATGTTCTGTGCAGGAAATATATGTTTCATCGAGCTCAATGTCTTTTAGAAAATATGACTGCCGAAGGCTGTCCACCAAATACAGTTACATTTAACACATTTATCAAAGGGTTGTGTGAAGATGGAGAAGTAGATTGGGCTGTTAGGGTGCTCAACAAGATGAGGGAAAATGGGTGTTTGCCTAATATTACGACATATAATGAGTTACTGGATGGTCTGTTCAAGGTGAACAGATTTGAAGAAGCATTTGGACTTGTCAAGGAGATAGATGAAAAGGGACTGAAACTGAATTTGGTAACATACAACACCATTTTGAATGGTTTTTGTCGCGCTGGGATGACCAAAGAGGCTATGCAGGTTTTTAGCAACATGCTAACACATGGAATAAAGCCTGATGCCATTACATATAACATACTGATATATTTCTATTGCAAGCAAGGCAGGATAAAGACTGCTACTGAGCTTTTCAACAGCACTGGTGCAGCAAAGGAATGGTGCCCGGATGTAATAGCTTATACTAGTCTTCTATGGGGGATTTGTAACTCGGTAGGTCTAGATGAGGCCATGGTTCATCTTGATAAGATGATAAGGAAAGGTATCTGCCCCAACATTGGCACATGGGATGTGTTGGTGCGGTGCTTCTTTAGCAGCTTAGGTCATTTGGGGCCAATCTACATACTGGATGATATTCTTCGTGAAGGATAA

Protein Analysis

663

Amino Acids

74.46

Weight (kDa)

8.02

Isoelectric Point (pI)

26.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 145 - 194 1.2e-13 PPR repeat family
PPR_3 PF13812 149 - 194 2.4e-08 Pentatricopeptide repeat domain
PPR_3 PF13812 170 - 226 1.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 176 - 209 8.1e-12 PPR repeat
PPR PF01535 183 - 213 3.1e-07 PPR repeat
PPR_2 PF13041 184 - 229 1.2e-14 PPR repeat family
PPR_1 PF12854 211 - 239 1.4e-09 PPR repeat
PPR_long PF17177 243 - 326 6.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 243 - 273 1.3e-08 PPR repeat
PPR_3 PF13812 243 - 294 4.1e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 245 - 292 7.1e-15 PPR repeat family
PPR PF01535 249 - 278 1.8e-06 PPR repeat
PPR_3 PF13812 269 - 327 1.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 276 - 308 3e-06 PPR repeat
PPR_2 PF13041 281 - 327 4.6e-12 PPR repeat family
PPR_1 PF12854 311 - 344 6.9e-10 PPR repeat
PPR_2 PF13041 315 - 363 7.8e-17 PPR repeat family
PPR PF01535 319 - 348 1.6e-07 PPR repeat
PPR_3 PF13812 341 - 395 1.7e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 347 - 379 2.6e-11 PPR repeat
PPR_2 PF13041 350 - 399 5.8e-19 PPR repeat family
PPR PF01535 353 - 383 2.3e-07 PPR repeat
PPR_3 PF13812 373 - 431 7.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 381 - 413 2.1e-09 PPR repeat
PPR_2 PF13041 392 - 434 6.6e-10 PPR repeat family
PPR_long PF17177 408 - 499 5.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 420 - 468 2.8e-13 PPR repeat family
PPR_3 PF13812 444 - 499 7.4e-11 Pentatricopeptide repeat domain
TPR_24 PF23276 449 - 552 5.8e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 452 - 484 7.1e-14 PPR repeat
PPR_2 PF13041 455 - 504 9.6e-16 PPR repeat family
PPR PF01535 458 - 488 6.8e-07 PPR repeat
PPR_long PF17177 477 - 579 8.6e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 486 - 517 6.9e-06 PPR repeat
PPR_2 PF13041 490 - 539 1.9e-14 PPR repeat family
PPR_3 PF13812 514 - 572 1e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 521 - 553 5.7e-13 PPR repeat
PPR_2 PF13041 526 - 569 2.2e-16 PPR repeat family
PPR PF01535 528 - 558 2.4e-08 PPR repeat
PPR_1 PF12854 557 - 586 1.4e-10 PPR repeat
PPR_2 PF13041 596 - 643 4.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 347, 750
AasI GACNNNNNNGTC 2 cut(s) 670, 842
Acc36I ACCTGC 1 cut(s) 1633
AccB1I GGYRCC 1 cut(s) 1782
AccI GTMKAC 1 cut(s) 674
AccII CGCG 1 cut(s) 1617
AciI CCGC 3 cut(s) 821, 1024, 1921
AclI AACGTT 1 cut(s) 948
AcsI RAATTY 4 cut(s) 120, 419, 785, 1576
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 170, 509, 1898
AhlI ACTAGT 1 cut(s) 1805
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 4 cut(s) 1518, 1550, 1562, 1594
AloI GAACNNNNNNTCC 2 cut(s) 1490, 1522
Alw21I GWGCWC 5 cut(s) 66, 604, 1166, 1324, 1440
Alw26I GTCTC 2 cut(s) 1088, 1217
Alw44I GTGCAC 1 cut(s) 600
AoxI GGCC 4 cut(s) 243, 941, 1848, 1952
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 3 cut(s) 28, 1769, 1935
ApoI RAATTY 4 cut(s) 120, 419, 785, 1576
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 1619
AspS9I GGNCC 2 cut(s) 195, 1952
AsuC2I CCSGG 1 cut(s) 1787
AsuHPI GGTGA 3 cut(s) 367, 664, 1525
AsuII TTCGAA 1 cut(s) 729
AvaII GGWCC 1 cut(s) 195
BaeGI GKGCMC 2 cut(s) 604, 1787
BanI GGYRCC 1 cut(s) 1782
BanII GRGCYC 3 cut(s) 165, 1050, 1324
BbsI GAAGAC 1 cut(s) 1802
Bbv12I GWGCWC 5 cut(s) 66, 604, 1166, 1324, 1440
BbvI GCAGC 3 cut(s) 15, 1781, 1947
BccI CCATC 8 cut(s) 275, 521, 526, 590, 1126, 1178, 1403, 1493
BceAI ACGGC 2 cut(s) 1230, 1239
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 1 cut(s) 1787
BcoDI GTCTC 2 cut(s) 1088, 1217
BcuI ACTAGT 1 cut(s) 1805
BfaI CTAG 2 cut(s) 1806, 1841
BfmI CTRYAG 2 cut(s) 406, 666
BfuAI ACCTGC 1 cut(s) 1633
BisI GCNGC 3 cut(s) 29, 1770, 1936
BlpI GCTNAGC 2 cut(s) 65, 384
BlsI GCNGC 3 cut(s) 30, 1771, 1937
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 242, 1787
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 195, 1952
BmiI GGNNCC 5 cut(s) 266, 537, 1022, 1784, 1953
BmrFI CCNGG 2 cut(s) 242, 1787
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 5 cut(s) 8, 288, 454, 1226, 1672
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1802
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 1939
Bpu1102I GCTNAGC 2 cut(s) 65, 384
Bpu14I TTCGAA 1 cut(s) 729
BpuMI CCSGG 1 cut(s) 1787
BsaAI YACGTR 2 cut(s) 552, 1278
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 2 cut(s) 1246, 1851
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 509, 1898
Bse1I ACTGG 4 cut(s) 77, 1500, 1768, 1971
Bse3DI GCAATG 3 cut(s) 198, 467, 803
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 1246, 1851
BseLI CCNNNNNNNGG 3 cut(s) 170, 509, 1898
BseMI GCAATG 3 cut(s) 198, 467, 803
BseMII CTCAG 4 cut(s) 79, 324, 375, 1737
BseNI ACTGG 4 cut(s) 77, 1500, 1768, 1971
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 604, 1787
BseXI GCAGC 3 cut(s) 15, 1781, 1947
BseYI CCCAGC 3 cut(s) 83, 374, 1619
BsgI GTGCAG 3 cut(s) 308, 1318, 1788
Bsh1236I CGCG 1 cut(s) 1617
BshFI GGCC 4 cut(s) 245, 943, 1850, 1954
BshNI GGYRCC 1 cut(s) 1782
BsiHKAI GWGCWC 5 cut(s) 66, 604, 1166, 1324, 1440
BsiSI CCGG 1 cut(s) 1787
BslFI GGGAC 2 cut(s) 627, 1578
BslI CCNNNNNNNGG 3 cut(s) 170, 509, 1898
BsmAI GTCTC 2 cut(s) 1088, 1217
BsmFI GGGAC 2 cut(s) 627, 1578
BsnI GGCC 4 cut(s) 245, 943, 1850, 1954
Bso31I GGTCTC 1 cut(s) 1088
Bsp119I TTCGAA 1 cut(s) 729
Bsp1286I GDGCHC 8 cut(s) 66, 165, 604, 1050, 1166, 1324, 1440, 1787
Bsp143I GATC 1 cut(s) 495
Bsp1720I GCTNAGC 2 cut(s) 65, 384
Bsp19I CCATGG 1 cut(s) 1851
BspACI CCGC 3 cut(s) 821, 1024, 1921
BspANI GGCC 4 cut(s) 245, 943, 1850, 1954
BspCNI CTCAG 4 cut(s) 78, 325, 376, 1738
BspFNI CGCG 1 cut(s) 1617
BspLI GGNNCC 5 cut(s) 266, 537, 1022, 1784, 1953
BspMI ACCTGC 1 cut(s) 1633
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 1782
BspTNI GGTCTC 1 cut(s) 1088
BsrDI GCAATG 3 cut(s) 198, 467, 803
BsrI ACTGG 4 cut(s) 77, 1500, 1768, 1971
BssECI CCNNGG 2 cut(s) 1246, 1851
BssMI GATC 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 1851
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 6 cut(s) 439, 652, 667, 1072, 1082, 1372
Bst6I CTCTTC 1 cut(s) 786
BstBAI YACGTR 2 cut(s) 552, 1278
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 5 cut(s) 372, 390, 717, 1201, 1721
BstDEI CTNAG 6 cut(s) 65, 333, 384, 627, 1746, 1939
BstDSI CCRYGG 2 cut(s) 1246, 1851
BstFNI CGCG 1 cut(s) 1617
BstHHI GCGC 1 cut(s) 1619
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 2 cut(s) 1088, 1217
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 7 cut(s) 380, 389, 914, 1170, 1251, 1725, 1932
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 1660
BstSCI CCNGG 2 cut(s) 240, 1785
BstSFI CTRYAG 2 cut(s) 406, 666
BstSLI GKGCMC 2 cut(s) 604, 1787
BstSNI TACGTA 1 cut(s) 552
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 3 cut(s) 15, 1781, 1947
BstV2I GAAGAC 1 cut(s) 1802
BsuRI GGCC 4 cut(s) 245, 943, 1850, 1954
BtgI CCRYGG 2 cut(s) 1246, 1851
BtsIMutI CAGTG 2 cut(s) 435, 1761
BveI ACCTGC 1 cut(s) 1633
Cac8I GCNNGC 5 cut(s) 372, 390, 717, 1201, 1721
CfoI GCGC 1 cut(s) 1619
Cfr13I GGNCC 2 cut(s) 195, 1952
Csp6I GTAC 1 cut(s) 292
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 6 cut(s) 65, 333, 384, 627, 1746, 1939
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
DrdI GACNNNNNNGTC 2 cut(s) 670, 842
DseDI GACNNNNNNGTC 2 cut(s) 670, 842
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 1322
Eco105I TACGTA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 1851
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 3 cut(s) 165, 1050, 1324
Eco31I GGTCTC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 1322
EcoICRI GAGCTC 1 cut(s) 1322
EcoRI GAATTC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 1851
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 3 cut(s) 165, 1050, 1324
ErhI CCWWGG 1 cut(s) 1851
FaqI GGGAC 2 cut(s) 627, 1578
FauI CCCGC 1 cut(s) 814
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 3 cut(s) 29, 1770, 1936
FriOI GRGCYC 3 cut(s) 165, 1050, 1324
Fsp4HI GCNGC 3 cut(s) 29, 1770, 1936
FspBI CTAG 2 cut(s) 1806, 1841
GlaI GCGC 1 cut(s) 1618
GluI GCNGC 3 cut(s) 29, 1770, 1936
GsaI CCCAGC 3 cut(s) 87, 378, 1623
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 4 cut(s) 245, 943, 1850, 1954
HapII CCGG 1 cut(s) 1787
HhaI GCGC 1 cut(s) 1619
Hin6I GCGC 1 cut(s) 1617
HinP1I GCGC 1 cut(s) 1617
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 131, 726, 779, 896
HpaII CCGG 1 cut(s) 1787
HphI GGTGA 3 cut(s) 367, 664, 1525
Hpy166II GTNNAC 6 cut(s) 549, 602, 675, 952, 1361, 1516
Hpy188I TCNGA 6 cut(s) 9, 136, 334, 492, 880, 1222
Hpy188III TCNNGA 7 cut(s) 210, 644, 1010, 1034, 1841, 1862, 1982
Hpy8I GTNNAC 6 cut(s) 549, 602, 675, 952, 1361, 1516
Hpy99I CGWCG 1 cut(s) 862
HpyAV CCTTC 7 cut(s) 8, 562, 625, 688, 983, 1346, 1979
HpyCH4III ACNGT 6 cut(s) 439, 652, 667, 1072, 1082, 1372
HpyCH4IV ACGT 3 cut(s) 551, 948, 1277
HpyF10VI GCNNNNNNNGC 7 cut(s) 380, 389, 914, 1170, 1251, 1725, 1932
HpyF3I CTNAG 6 cut(s) 65, 333, 384, 627, 1746, 1939
HpySE526I ACGT 3 cut(s) 551, 948, 1277
HspAI GCGC 1 cut(s) 1617
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 1 cut(s) 495
LmnI GCTCC 5 cut(s) 26, 264, 337, 535, 712
Lsp1109I GCAGC 3 cut(s) 15, 1781, 1947
LweI GCATC 5 cut(s) 8, 288, 454, 1226, 1672
MaeI CTAG 2 cut(s) 1806, 1841
MaeII ACGT 3 cut(s) 551, 948, 1277
MaeIII GTNAC 5 cut(s) 512, 1372, 1491, 1582, 1826
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 8 cut(s) 409, 454, 532, 803, 1418, 1538, 1802, 1970
MfeI CAATTG 2 cut(s) 167, 230
MhlI GDGCHC 8 cut(s) 66, 165, 604, 1050, 1166, 1324, 1440, 1787
MluCI AATT 8 cut(s) 105, 120, 167, 230, 311, 419, 785, 1576
MlyI GAGTC 3 cut(s) 140, 788, 905
MmeI TCCRAC 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 2 cut(s) 89, 1380
MslI CAYNNNNRTG 1 cut(s) 1276
MspI CCGG 1 cut(s) 1787
MspR9I CCNGG 2 cut(s) 242, 1787
MunI CAATTG 2 cut(s) 167, 230
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 7 cut(s) 380, 389, 914, 1170, 1251, 1725, 1932
NciI CCSGG 1 cut(s) 1787
NcoI CCATGG 1 cut(s) 1851
NdeII GATC 1 cut(s) 495
NlaIV GGNNCC 5 cut(s) 266, 537, 1022, 1784, 1953
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 1660
NspV TTCGAA 1 cut(s) 729
PceI AGGCCT 1 cut(s) 943
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 726
PkrI GCNGC 3 cut(s) 30, 1771, 1937
PleI GAGTC 3 cut(s) 139, 787, 904
PpsI GAGTC 3 cut(s) 139, 787, 904
Ppu21I YACGTR 2 cut(s) 552, 1278
PsiI TTATAA 2 cut(s) 347, 750
Psp124BI GAGCTC 1 cut(s) 1324
Psp1406I AACGTT 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 3 cut(s) 83, 374, 1619
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 5 cut(s) 266, 537, 1022, 1784, 1953
PspPI GGNCC 2 cut(s) 195, 1952
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 1276
SacI GAGCTC 1 cut(s) 1324
SaqAI TTAA 2 cut(s) 89, 1380
SatI GCNGC 3 cut(s) 29, 1770, 1936
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 2 cut(s) 195, 1952
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 3 cut(s) 140, 788, 905
ScrFI CCNGG 2 cut(s) 242, 1787
SduI GDGCHC 8 cut(s) 66, 165, 604, 1050, 1166, 1324, 1440, 1787
SfaNI GCATC 5 cut(s) 8, 288, 454, 1226, 1672
SfcI CTRYAG 2 cut(s) 406, 666
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 1276
SnaBI TACGTA 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 1805
Sse9I AATT 8 cut(s) 105, 120, 167, 230, 311, 419, 785, 1576
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 3 cut(s) 821, 1024, 1921
SspI AATATT 2 cut(s) 188, 1474
SspMI CTAG 2 cut(s) 1806, 1841
SstI GAGCTC 1 cut(s) 1324
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 2 cut(s) 240, 1785
StyI CCWWGG 1 cut(s) 1851
TaaI ACNGT 6 cut(s) 439, 652, 667, 1072, 1082, 1372
TaiI ACGT 3 cut(s) 554, 951, 1280
TaqI TCGA 3 cut(s) 729, 857, 1318
TasI AATT 8 cut(s) 105, 120, 167, 230, 311, 419, 785, 1576
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 726
Tru1I TTAA 2 cut(s) 89, 1380
Tru9I TTAA 2 cut(s) 89, 1380
TscAI CASTG 2 cut(s) 442, 1768
TseI GCWGC 3 cut(s) 28, 1769, 1935
TspDTI ATGAA 6 cut(s) 323, 533, 717, 1304, 1572, 1847
TspRI CASTG 2 cut(s) 442, 1768
VneI GTGCAC 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 4 cut(s) 120, 419, 785, 1576
XbaI TCTAGA 1 cut(s) 1840
XceI RCATGY 1 cut(s) 1660
XmiI GTMKAC 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 2 cut(s) 1806, 1841
ZrmI AGTACT 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.