Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0008613

Physical Location & Seq

Genomic Coordinates Reverse (-)

69038 .. 70044

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgattaagaagcttgggagtcaatgtgaaatggatggtgtgcagtacttgaagcaccaaatgaaattggaggttggttgctctgaggagttgtttataagtgtggtgaagtcttataggcgagctgggttggctgagcaggcattgaagatgttctatgagcctccttggctgtttactgccctccatacattagcattaatgtttttggcgaaaacttttgtgaggggatgtaggcctaacattcacacctttacttccttgatgaagggttattttatggaaggcagagttagtgaagctctggacttgtggaaccgcatggttcgtgagggatttgggcccaatgttgttacatatacaactattatacatggtctctgctttgttaggaatatgcacgaagctgtatctgttttacatgagatggagagaaaaggctgctctccaaatgtgagcacatatagcacgtcactcttattgatgggtttgcaaaagctggcaaccttgttggtgctgttaaaaccatatacatgctcacaacatatgcacacaatcataaaagggatcaaggcttaccttcagcaatcactgacatggattccatcttatgctgcaaccacgaacactgaatatggccttctgttacttaccaacttgcttctcaatggacagaacaatatgcaaaacgtcggtagtaatcagggaccaattcatctgtatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

242

Amino Acids

27.43

Weight (kDa)

9.1

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48810
fragaria_vesca	FvH4_4g20630
malus_domestica	MD13G1149200.v1.1
prunus_persica	Prupe.1G113200_v2.0.a1
pyrus_communis	pycom13g12840
rosa_chinensis	RchiOBHm_Chr4g0425991 RchiOBHm_Chr4g0426031
rosa_laevigata	RLG00000007323 RLG00000007325
rosa_multiflora	Rmu_ssc0000281.1_g000016 Rmu_ssc0000281.1_g000018 Rmu_ssc0000281.1_g000020
rosa_roxburghii	Rroxscaffold_5G00368000
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG264900 Rh4BG270800 Rh4BG271100 Rh4CG283400 Rh4CG283700 Rh4CG283900 Rh4DG267400
rosa_wichuraiana	Rw4G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	52, 148
AjiI	CACGTC	1 cut(s)	471
AluBI	AGCT	5 cut(s)	13, 125, 302, 407, 499
AluI	AGCT	5 cut(s)	13, 125, 302, 407, 499
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	3 cut(s)	236, 341, 637
ApaI	GGGCCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	441, 614
AseI	ATTAAT	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	341, 342, 707
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	428, 601
BccI	CCATC	4 cut(s)	29, 421, 478, 613
BcoDI	GTCTC	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	442, 615
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	2 cut(s)	443, 616
BmcAI	AGTACT	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	3 cut(s)	341, 342, 707
BmiI	GGNNCC	3 cut(s)	317, 343, 708
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	40, 236
BseMII	CTCAG	2 cut(s)	75, 126
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	428, 601
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	238, 343, 639
BsiHKAI	GWGCWC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	3 cut(s)	238, 343, 639
Bso31I	GGTCTC	1 cut(s)	383
Bsp120I	GGGCCC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	345, 461
Bsp143I	GATC	1 cut(s)	567
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	3 cut(s)	238, 343, 639
BspCNI	CTCAG	2 cut(s)	76, 127
BspLI	GGNNCC	3 cut(s)	317, 343, 708
BspPI	GGATC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	123, 141, 501
BstDEI	CTNAG	2 cut(s)	84, 135
BstF5I	GGATG	2 cut(s)	40, 236
BstKTI	GATC	1 cut(s)	570
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 169, 465
BstNSI	RCATGY	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	428, 601
BsuRI	GGCC	3 cut(s)	238, 343, 639
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	40, 236
BtsIMutI	CAGTG	2 cut(s)	590, 627
Cac8I	GCNNGC	3 cut(s)	123, 141, 501
Cfr13I	GGNCC	3 cut(s)	341, 342, 707
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	5 cut(s)	322, 374, 422, 534, 597
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	84, 135
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	167
Eco147I	AGGCCT	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	5 cut(s)	325, 377, 425, 537, 600
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	5 cut(s)	321, 373, 421, 533, 596
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	442, 615
FokI	GGATG	2 cut(s)	47, 243
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	442, 615
GluI	GCNGC	2 cut(s)	442, 615
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	238, 343, 639
Hin1II	CATG	5 cut(s)	325, 377, 425, 537, 600
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	19, 601
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	305, 329
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	4 cut(s)	262, 278, 590, 650
HpyCH4IV	ACGT	2 cut(s)	470, 690
HpyCH4V	TGCA	6 cut(s)	43, 400, 493, 550, 617, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 169, 465
HpyF3I	CTNAG	2 cut(s)	84, 135
HpySE526I	ACGT	2 cut(s)	470, 690
Hsp92II	CATG	5 cut(s)	325, 377, 425, 537, 600
Kzo9I	GATC	1 cut(s)	567
LpnPI	CCDG	5 cut(s)	111, 125, 290, 485, 689
Lsp1109I	GCAGC	2 cut(s)	428, 601
MaeII	ACGT	2 cut(s)	470, 690
MaeIII	GTNAC	3 cut(s)	352, 471, 645
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	345, 461
MluCI	AATT	2 cut(s)	65, 711
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	6 cut(s)	64, 79, 174, 194, 219, 325
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	3 cut(s)	6, 200, 521
MslI	CAYNNNNRTG	2 cut(s)	532, 595
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 169, 465
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	5 cut(s)	325, 377, 425, 537, 600
NlaIV	GGNNCC	3 cut(s)	317, 343, 708
NmuCI	GTSAC	1 cut(s)	471
NspI	RCATGY	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	443, 616
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	317, 343, 708
PspOMI	GGGCCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	341, 342, 707
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	532, 595
SaqAI	TTAA	3 cut(s)	6, 200, 521
SatI	GCNGC	2 cut(s)	442, 615
Sau3AI	GATC	1 cut(s)	567
Sau96I	GGNCC	3 cut(s)	341, 342, 707
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	345, 461
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	532, 595
Sse9I	AATT	2 cut(s)	65, 711
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	319
StuI	AGGCCT	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	167
TaiI	ACGT	2 cut(s)	473, 693
TasI	AATT	2 cut(s)	65, 711
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	3 cut(s)	6, 200, 521
Tru9I	TTAA	3 cut(s)	6, 200, 521
TscAI	CASTG	2 cut(s)	597, 634
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	2 cut(s)	441, 614
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	77, 281, 704
TspRI	CASTG	2 cut(s)	597, 634
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	200
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.