Rh4BG270800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008613
Physical Location & Seq
Forward (+)
44451684 .. 44453888
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG270800.1

Sequence Viewer

Length: 1449 bp
ATGATTGAGAAGCTTGGGAGCCAATGTGAAATGGATGGTGTGCAGTACTTGATGCACCAAATGAAATTGGAGGGGGTTGGTTGCTCTGAGGAGTTGTTTATAACTGTGGTGAAGTCTTATAGGCGAGCTGGGTTGGCTGAGCAGGCATTGAAGATGTTCTATAGGATAAACGAATTCGGGTGCAAACCCACTGTGAAGATTTACAATCACTTGTTGGATGCATTGCTTTGCGAGAATAGGTTTCAGATGATAAATCCCATATATGGTAACATGAAGAAAGATGGGGTGGAGCCGAATGTGTTTACGTATAACATTCTGTTGAAGGCATTGTGTAAGAATGATAGGGTGGATGGTGCACACAAGTTGCTTGTGGAAATGTCTAAGAAGGGATGTTGTCCTGACTCGGTGAGCTATACGACTGTAGTGTCTGCATTGTGTAGGCTTGGGAAGGTAGATGAAGCGAGGGAGCTTGCTTGTAGATTCGAACCCAATGTGGCTGTTTATAATGCTTTGGTAAATGGGTTGTGCAAGGAGTTCAAATTTGAAGAGGCATTGGCATTGCTGGTTGAAATGGCGGGTAAGGGAATAGACCCTAATGTCATTACATACTCGACGATTATTAGTTCTTTTTCTGATATGAGGAATGTTGAGTCTGCTCTTGCAGTTTTGGCGAAAATGTTTGTGAGGGGATATAGGCCTAACATTCACACCTTTACTTCCTTGATAAAGGGTTATTTTATTGAAGGCAGAGTTAGTGAAGCTCTTGACTTGTGGAACCGCATGGTTTGTGAGGGATTTGAGCCCAATGTTGTTGCATATACAACTGTTATACATGGTCTCTGCTCTGTTGGGAATATGCGTGAAGCTGTATCTGTTTTACATGAGATGGAGATAAAAGGTTGCTCTCCAAATGTGAGCACATATAGCACTCTTATTGATGGGTTTGCAAAAGCTGGCAACCTTGTTGGTGCATCGGAGACTTGGAACAATATGATGAGCCGTGGTTGCCGTCCTAATGTCATAGCATATACGTGCATGGTGGATGTTCTGTGCAGGAAATATATGTTTCATCGAGCTCAATGTCTTTTAGAAAATATGACTGCCGAAGGCTGTCCACCAAATACAGTTACATTTAACACATTTATCAAAGGGTTGTGTGAAGATGGAGAAGTAGATTGGGCTGTTAAGGTGCTGAACAAGATGAGAGAAAATGGGTGTTTGCCCAACATTACGACATATAATGAGTTATTGGATGGTCTGTTCAAGGTGAACAGATTCGAAGAAGCATTTGGACTTGTCAGGGAGATAGATGAAAAGGGACTGAAACTGAATTTGACCATGGTGATGCAAAATGGTTACGGCAGCAGAAAAATACTGGTCAAGGAAATCATGTTGTTGCGCCTAGTAACAGGTCACCGGAACCGTCCTATGCACTTATCTTTCCTGTAA

Protein Analysis

482

Amino Acids

54.23

Weight (kDa)

7.75

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 112 2.2e-14 PPR repeat family
PPR_3 PF13812 67 - 112 4.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 94 - 127 4e-12 PPR repeat
PPR PF01535 101 - 131 2.1e-07 PPR repeat
PPR_2 PF13041 103 - 147 9.1e-15 PPR repeat family
PPR_1 PF12854 129 - 157 4.9e-10 PPR repeat
PPR_long PF17177 161 - 243 3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 161 - 212 1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 161 - 191 1e-07 PPR repeat
PPR_2 PF13041 163 - 210 1.6e-14 PPR repeat family
PPR PF01535 167 - 196 5.3e-06 PPR repeat
PPR_3 PF13812 187 - 245 2.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 194 - 226 2e-06 PPR repeat
PPR_2 PF13041 198 - 245 1.1e-11 PPR repeat family
PPR_1 PF12854 229 - 262 6e-08 PPR repeat
PPR_2 PF13041 233 - 281 5.6e-16 PPR repeat family
PPR PF01535 237 - 266 9.7e-07 PPR repeat
PPR_long PF17177 252 - 347 3.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 259 - 313 1.1e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 265 - 297 1.8e-11 PPR repeat
PPR_2 PF13041 268 - 317 3.8e-19 PPR repeat family
PPR PF01535 271 - 301 1.6e-07 PPR repeat
PPR_3 PF13812 291 - 349 5.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 299 - 331 1.4e-09 PPR repeat
PPR PF01535 306 - 336 8.8e-06 PPR repeat
PPR_2 PF13041 310 - 352 4.4e-10 PPR repeat family
PPR_2 PF13041 338 - 386 1.8e-13 PPR repeat family
PPR_3 PF13812 362 - 417 4.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 370 - 402 3.2e-14 PPR repeat
PPR_2 PF13041 373 - 422 3.6e-16 PPR repeat family
PPR PF01535 376 - 406 2.2e-07 PPR repeat
PPR_1 PF12854 404 - 435 2.4e-06 PPR repeat
PPR_2 PF13041 408 - 444 1.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 101, 504
AasI GACNNNNNNGTC 2 cut(s) 424, 596
AciI CCGC 2 cut(s) 575, 778
AcsI RAATTY 3 cut(s) 173, 539, 1330
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 7 cut(s) 151, 322, 538, 545, 569, 743, 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 1272, 1304
AloI GAACNNNNNNTCC 2 cut(s) 1244, 1276
AluBI AGCT 8 cut(s) 13, 128, 411, 469, 761, 866, 953, 1076
AluI AGCT 8 cut(s) 13, 128, 411, 469, 761, 866, 953, 1076
Alw21I GWGCWC 3 cut(s) 358, 920, 1078
Alw26I GTCTC 2 cut(s) 842, 971
Alw44I GTGCAC 1 cut(s) 354
AoxI GGCC 1 cut(s) 695
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 1362
ApoI RAATTY 3 cut(s) 173, 539, 1330
Asp700I GAANNNNTTC 2 cut(s) 155, 1274
AspLEI GCGC 1 cut(s) 1401
AsuHPI GGTGA 5 cut(s) 121, 418, 1279, 1354, 1406
AsuII TTCGAA 2 cut(s) 483, 1278
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 804, 1078
Bbv12I GWGCWC 3 cut(s) 358, 920, 1078
BbvI GCAGC 1 cut(s) 1374
BccI CCATC 7 cut(s) 29, 275, 344, 880, 932, 1157, 1247
BceAI ACGGC 3 cut(s) 984, 993, 1375
BcoDI GTCTC 2 cut(s) 842, 971
BfaI CTAG 1 cut(s) 1403
BfmI CTRYAG 2 cut(s) 160, 420
BisI GCNGC 1 cut(s) 1363
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 1364
BmcAI AGTACT 1 cut(s) 47
BmiI GGNNCC 4 cut(s) 20, 291, 776, 1421
BmsI GCATC 4 cut(s) 42, 208, 980, 1335
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 2 cut(s) 483, 1278
BsaAI YACGTR 2 cut(s) 306, 1032
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 2 cut(s) 1000, 1338
BsaWI WCCGGW 1 cut(s) 1416
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 1380
Bse3DI GCAATG 2 cut(s) 221, 557
BseDI CCNNGG 2 cut(s) 1000, 1338
BseGI GGATG 6 cut(s) 40, 223, 355, 395, 1048, 1258
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 2 cut(s) 221, 557
BseMII CTCAG 2 cut(s) 78, 129
BseNI ACTGG 1 cut(s) 1380
BseRI GAGGAG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 1374
BseYI CCCAGC 1 cut(s) 128
BsgI GTGCAG 2 cut(s) 62, 1072
BshFI GGCC 1 cut(s) 697
BsiHKAI GWGCWC 3 cut(s) 358, 920, 1078
BsiSI CCGG 1 cut(s) 1417
BslFI GGGAC 1 cut(s) 1332
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 842, 971
BsmFI GGGAC 1 cut(s) 1332
BsnI GGCC 1 cut(s) 697
Bso31I GGTCTC 1 cut(s) 842
Bsp119I TTCGAA 2 cut(s) 483, 1278
Bsp1286I GDGCHC 4 cut(s) 358, 804, 920, 1078
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 1338
BspACI CCGC 2 cut(s) 575, 778
BspANI GGCC 1 cut(s) 697
BspCNI CTCAG 2 cut(s) 79, 130
BspLI GGNNCC 4 cut(s) 20, 291, 776, 1421
BspT104I TTCGAA 2 cut(s) 483, 1278
BspTNI GGTCTC 1 cut(s) 842
BsrDI GCAATG 2 cut(s) 221, 557
BsrI ACTGG 1 cut(s) 1380
BssECI CCNNGG 2 cut(s) 1000, 1338
BssT1I CCWWGG 1 cut(s) 1338
Bst4CI ACNGT 6 cut(s) 106, 193, 421, 826, 1126, 1424
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 2 cut(s) 306, 1032
BstBI TTCGAA 2 cut(s) 483, 1278
BstC8I GCNNGC 4 cut(s) 126, 144, 471, 955
BstDEI CTNAG 3 cut(s) 87, 138, 381
BstDSI CCRYGG 2 cut(s) 1000, 1338
BstEII GGTNACC 1 cut(s) 1412
BstF5I GGATG 6 cut(s) 40, 223, 355, 395, 1048, 1258
BstHHI GCGC 1 cut(s) 1401
BstMAI GTCTC 2 cut(s) 842, 971
BstMWI GCNNNNNNNGC 5 cut(s) 134, 143, 668, 924, 1005
BstPI GGTNACC 1 cut(s) 1412
BstSFI CTRYAG 2 cut(s) 160, 420
BstSLI GKGCMC 1 cut(s) 358
BstSNI TACGTA 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 1374
BsuRI GGCC 1 cut(s) 697
BtgI CCRYGG 2 cut(s) 1000, 1338
BtsCI GGATG 6 cut(s) 40, 223, 355, 395, 1048, 1258
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 4 cut(s) 126, 144, 471, 955
CfoI GCGC 1 cut(s) 1401
Csp6I GTAC 1 cut(s) 46
CviAII CATG 7 cut(s) 271, 781, 833, 881, 1036, 1339, 1390
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 3 cut(s) 87, 138, 381
DrdI GACNNNNNNGTC 2 cut(s) 424, 596
DseDI GACNNNNNNGTC 2 cut(s) 424, 596
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 1076
Eco105I TACGTA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 2 cut(s) 804, 1078
Eco31I GGTCTC 1 cut(s) 842
Eco53kI GAGCTC 1 cut(s) 1076
Eco91I GGTNACC 1 cut(s) 1412
EcoICRI GAGCTC 1 cut(s) 1076
EcoO65I GGTNACC 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 1338
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 804, 1078
ErhI CCWWGG 1 cut(s) 1338
FaeI CATG 7 cut(s) 274, 784, 836, 884, 1039, 1342, 1393
FaqI GGGAC 1 cut(s) 1332
FatI CATG 7 cut(s) 270, 780, 832, 880, 1035, 1338, 1389
FauI CCCGC 1 cut(s) 568
Fnu4HI GCNGC 1 cut(s) 1363
FokI GGATG 6 cut(s) 47, 230, 362, 402, 1055, 1265
FriOI GRGCYC 2 cut(s) 804, 1078
Fsp4HI GCNGC 1 cut(s) 1363
FspBI CTAG 1 cut(s) 1403
GlaI GCGC 1 cut(s) 1400
GluI GCNGC 1 cut(s) 1363
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 697
HapII CCGG 1 cut(s) 1417
HhaI GCGC 1 cut(s) 1401
Hin1II CATG 7 cut(s) 274, 784, 836, 884, 1039, 1342, 1393
Hin6I GCGC 1 cut(s) 1399
HinP1I GCGC 1 cut(s) 1399
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 4 cut(s) 401, 480, 650, 1275
HpaII CCGG 1 cut(s) 1417
HphI GGTGA 5 cut(s) 121, 418, 1279, 1354, 1406
Hpy166II GTNNAC 4 cut(s) 303, 356, 1115, 1270
Hpy188I TCNGA 4 cut(s) 88, 246, 634, 976
Hpy188III TCNNGA 2 cut(s) 398, 764
Hpy8I GTNNAC 4 cut(s) 303, 356, 1115, 1270
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 5 cut(s) 316, 379, 442, 737, 1100
HpyCH4III ACNGT 6 cut(s) 106, 193, 421, 826, 1126, 1424
HpyCH4IV ACGT 2 cut(s) 305, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 143, 668, 924, 1005
HpyF3I CTNAG 3 cut(s) 87, 138, 381
HpySE526I ACGT 2 cut(s) 305, 1031
Hsp92II CATG 7 cut(s) 274, 784, 836, 884, 1039, 1342, 1393
HspAI GCGC 1 cut(s) 1399
LmnI GCTCC 3 cut(s) 18, 289, 466
Lsp1109I GCAGC 1 cut(s) 1374
LweI GCATC 4 cut(s) 42, 208, 980, 1335
MaeI CTAG 1 cut(s) 1403
MaeII ACGT 2 cut(s) 305, 1031
MaeIII GTNAC 5 cut(s) 266, 1126, 1355, 1405, 1412
MboII GAAGA 6 cut(s) 163, 208, 286, 557, 1172, 1292
MhlI GDGCHC 4 cut(s) 358, 804, 920, 1078
MluCI AATT 4 cut(s) 65, 173, 539, 1330
MlyI GAGTC 2 cut(s) 395, 659
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 7 cut(s) 64, 82, 456, 541, 633, 678, 784
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 2 cut(s) 155, 1274
MseI TTAA 2 cut(s) 1134, 1185
MslI CAYNNNNRTG 2 cut(s) 1030, 1343
MspI CCGG 1 cut(s) 1417
MwoI GCNNNNNNNGC 5 cut(s) 134, 143, 668, 924, 1005
NcoI CCATGG 1 cut(s) 1338
NlaIII CATG 7 cut(s) 274, 784, 836, 884, 1039, 1342, 1393
NlaIV GGNNCC 4 cut(s) 20, 291, 776, 1421
NmuCI GTSAC 1 cut(s) 1412
NsiI ATGCAT 1 cut(s) 223
NspV TTCGAA 2 cut(s) 483, 1278
PceI AGGCCT 1 cut(s) 697
PdmI GAANNNNTTC 2 cut(s) 155, 1274
PfeI GAWTC 2 cut(s) 480, 1275
PkrI GCNGC 1 cut(s) 1364
PleI GAGTC 2 cut(s) 395, 658
PpsI GAGTC 2 cut(s) 395, 658
Ppu21I YACGTR 2 cut(s) 306, 1032
PsiI TTATAA 2 cut(s) 101, 504
Psp124BI GAGCTC 1 cut(s) 1078
PspEI GGTNACC 1 cut(s) 1412
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 4 cut(s) 20, 291, 776, 1421
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 1030, 1343
SacI GAGCTC 1 cut(s) 1078
SaqAI TTAA 2 cut(s) 1134, 1185
SatI GCNGC 1 cut(s) 1363
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 2 cut(s) 395, 659
SduI GDGCHC 4 cut(s) 358, 804, 920, 1078
SfaNI GCATC 4 cut(s) 42, 208, 980, 1335
SfcI CTRYAG 2 cut(s) 160, 420
SfuI TTCGAA 2 cut(s) 483, 1278
SmiMI CAYNNNNRTG 2 cut(s) 1030, 1343
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 4 cut(s) 65, 173, 539, 1330
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 2 cut(s) 575, 778
SspMI CTAG 1 cut(s) 1403
SstI GAGCTC 1 cut(s) 1078
StuI AGGCCT 1 cut(s) 697
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 6 cut(s) 106, 193, 421, 826, 1126, 1424
TaiI ACGT 2 cut(s) 308, 1034
TaqI TCGA 4 cut(s) 483, 611, 1072, 1278
TasI AATT 4 cut(s) 65, 173, 539, 1330
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 2 cut(s) 480, 1275
Tru1I TTAA 2 cut(s) 1134, 1185
Tru9I TTAA 2 cut(s) 1134, 1185
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 1412
TseI GCWGC 1 cut(s) 1362
Tsp45I GTSAC 1 cut(s) 1412
TspDTI ATGAA 5 cut(s) 77, 287, 471, 1058, 1326
TspRI CASTG 1 cut(s) 196
VneI GTGCAC 1 cut(s) 354
XapI RAATTY 3 cut(s) 173, 539, 1330
XmnI GAANNNNTTC 2 cut(s) 155, 1274
XspI CTAG 1 cut(s) 1403
ZrmI AGTACT 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.