Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Reverse (-)

36266240 .. 36268108

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGACGGATATTGGTGTACCCTTATTCAAAGATTTGTAGATGAGTATCGACTTGATGATGAGAGCCGTTTCTCGGTGACTGCATTTGTTAAGTTCATAATCAGTCGTAGCAAAGGAAAGGCTCTTCATCTCACGCTATCCCCATGTGCTTCAGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTGAATTGCCCAGCCGTTTAGTGAACCGTAATGAAAGCATAATTCAAGAAATAATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAAGCAGCGATAATTTGGAAAACTTCCTTGGACAGATCTCCATTCACTGCAAGAACTTGTGTCTTTTGCGTGTGGCTGATGCAGACATTGGTAAAGATGAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTAATCTTGAAGAATGCAAATATTGATCGGGATGATCTTGTGACGCTACTGCGGGGCTGCAACGAGCTTGTGCGTTTGGATGTCAGCAATTGTATAGGTTTTGATGAGGAAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTGCTGATTTCAGCTCTCAGGGTTCCACACTAGATGATTATGATGATGACGATGGATATGAATTGAATTCCCATGATGCAATTTTTGATGGATACTGTTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

246

Amino Acids

27.89

Weight (kDa)

4.47

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	331, 700
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	79, 341
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	89, 226, 266, 308, 502, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	6 cut(s)	259, 471, 484, 559, 622, 648
AluI	AGCT	6 cut(s)	259, 471, 484, 559, 622, 648
ApeKI	GCWGC	4 cut(s)	233, 357, 475, 549
ApoI	RAATTY	2 cut(s)	331, 700
AseI	ATTAAT	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	220, 369, 462, 536
BccI	CCATC	2 cut(s)	680, 716
BceAI	ACGGC	2 cut(s)	111, 261
BciVI	GTATCC	1 cut(s)	719
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	719
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	4 cut(s)	234, 358, 476, 550
BlsI	GCNGC	4 cut(s)	235, 359, 477, 551
BmcAI	AGTACT	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	658
BmsI	GCATC	2 cut(s)	421, 700
Bpu10I	CCTNAGC	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse3DI	GCAATG	2 cut(s)	28, 462
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	3 cut(s)	45, 529, 577
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	2 cut(s)	28, 462
BseMII	CTCAG	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	220, 369, 462, 536
BseYI	CCCAGC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	387, 517, 526
BspACI	CCGC	1 cut(s)	544
BspCNI	CTCAG	1 cut(s)	664
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	2 cut(s)	28, 462
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	3 cut(s)	387, 517, 526
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	290, 731
Bst6I	CTCTTC	2 cut(s)	6, 189
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	473, 624
BstDEI	CTNAG	2 cut(s)	480, 651
BstF5I	GGATG	3 cut(s)	45, 529, 577
BstKTI	GATC	3 cut(s)	390, 520, 529
BstMBI	GATC	3 cut(s)	387, 517, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 623
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	220, 369, 462, 536
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	719
BtsCI	GGATG	3 cut(s)	45, 529, 577
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	473, 624
CciI	TCATGA	1 cut(s)	61
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	78, 340
CviAII	CATG	3 cut(s)	62, 204, 707
CviQI	GTAC	2 cut(s)	78, 340
DdeI	CTNAG	2 cut(s)	480, 651
DpnI	GATC	3 cut(s)	389, 519, 528
DpnII	GATC	3 cut(s)	387, 517, 526
Eam1104I	CTCTTC	2 cut(s)	6, 189
EarI	CTCTTC	2 cut(s)	6, 189
Eco130I	CCWWGG	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	65, 207, 710
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	61, 203, 706
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	234, 358, 476, 550
FokI	GGATG	3 cut(s)	52, 536, 584
Fsp4HI	GCNGC	4 cut(s)	234, 358, 476, 550
FspBI	CTAG	1 cut(s)	665
GluI	GCNGC	4 cut(s)	234, 358, 476, 550
GsaI	CCCAGC	1 cut(s)	276
HapII	CCGG	1 cut(s)	735
HgaI	GACGC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	65, 207, 710
HindIII	AAGCTT	3 cut(s)	257, 482, 620
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	78, 286, 327
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	6 cut(s)	62, 223, 263, 308, 499, 521
Hpy8I	GTNNAC	3 cut(s)	78, 286, 327
HpyCH4III	ACNGT	2 cut(s)	290, 731
HpyCH4V	TGCA	8 cut(s)	56, 143, 236, 402, 434, 509, 552, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 623
HpyF3I	CTNAG	2 cut(s)	480, 651
Hsp92II	CATG	3 cut(s)	65, 207, 710
Kzo9I	GATC	3 cut(s)	387, 517, 526
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	3 cut(s)	261, 286, 638
Lsp1109I	GCAGC	4 cut(s)	220, 369, 462, 536
LweI	GCATC	2 cut(s)	421, 700
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	136, 532
MalI	GATC	3 cut(s)	389, 519, 528
MboI	GATC	3 cut(s)	387, 517, 526
MboII	GAAGA	6 cut(s)	23, 176, 227, 514, 614, 620
MfeI	CAATTG	2 cut(s)	462, 580
MflI	RGATCY	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	1 cut(s)	592
MseI	TTAA	4 cut(s)	150, 254, 486, 494
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	735
MunI	CAATTG	2 cut(s)	462, 580
Mva1269I	GAATGC	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	481, 623
NdeII	GATC	3 cut(s)	387, 517, 526
NlaIII	CATG	3 cut(s)	65, 207, 710
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	136, 532
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	235, 359, 477, 551
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	658
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	79, 341
RsaNI	GTAC	2 cut(s)	78, 340
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	150, 254, 486, 494
SatI	GCNGC	4 cut(s)	234, 358, 476, 550
Sau3AI	GATC	3 cut(s)	387, 517, 526
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	1 cut(s)	34
SetI	ASST	7 cut(s)	261, 473, 486, 561, 592, 624, 650
SfaNI	GCATC	2 cut(s)	421, 700
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SsiI	CCGC	1 cut(s)	544
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	665
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	290, 731
TaqI	TCGA	1 cut(s)	109
TatI	WGTACW	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	150, 254, 486, 494
Tru9I	TTAA	4 cut(s)	150, 254, 486, 494
TscAI	CASTG	1 cut(s)	404
TseFI	GTSAC	2 cut(s)	136, 532
TseI	GCWGC	4 cut(s)	233, 357, 475, 549
Tsp45I	GTSAC	2 cut(s)	136, 532
TspDTI	ATGAA	6 cut(s)	145, 176, 309, 465, 621, 708
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	404
Vha464I	CTTAAG	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	2 cut(s)	331, 700
XspI	CTAG	1 cut(s)	665
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.