RLG00000007321

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003995
Physical Location & Seq
Forward (+)
15793025 .. 15794185
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007321

Sequence Viewer

Length: 771 bp
ATGCCAAAGTTAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTCCAAACTTGACATTGGGAGGTCCAACACCCATTGGTGCTAAGAAGGCCAAATTAGACCCTTTCACTAGGGATGTGATCAATTTGCATAGCAAAAGTTGGACACATGAGGTGTTTAATCTTGCATTTGGGCTTGTTTTGAAGCCACCATTTAATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGCTCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAAACGGCCCACAACTCCAAGGCTCCACTTCCAAAAGGGTCTTTTGGCTGTGGAATCAGGACAAAATGCTGTGATTAGAACATTGCTGTATAAGCATACTCTGGTGAGAGCGCACCCATATGGAATAACAGTGGCCGAGTTTACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGAAAAACAGGTTTGAAAGATGAAGGCCCTCTGGTTCCAAAATATAAAGGAGCTGAGGGAAACATCATTGGCAATGTTCTTGCCGGAGACAGATATTCAGTAGCATATGACAGGACACTGGAGGAGATACTGAGAATTGTATATGGATCGGGTGATGAACATGTCCCTGGGGGTTTCTATCCTGAAGGAGCTGATGGTCGTATTGCCAAATCCCATCTGCAAAATGGTACTGGAAGAAATAGTACTAGGCCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

257

Amino Acids

28.11

Weight (kDa)

9.19

Isoelectric Point (pI)

21.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 5 - 144 1.5e-18 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 3 cut(s) 50, 742, 757
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 3 cut(s) 247, 280, 529
AjnI CCWGG 1 cut(s) 679
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 5 cut(s) 59, 276, 511, 566, 704
AluI AGCT 5 cut(s) 59, 276, 511, 566, 704
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 667
AoxI GGCC 5 cut(s) 153, 344, 471, 538, 761
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 128, 345, 539
AsuHPI GGTGA 2 cut(s) 454, 677
AvaII GGWCC 1 cut(s) 128
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
BbvCI CCTCAGC 1 cut(s) 567
BccI CCATC 2 cut(s) 701, 735
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 2 cut(s) 174, 759
BmcAI AGTACT 2 cut(s) 50, 757
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 128, 345, 539
BmiI GGNNCC 2 cut(s) 362, 549
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 653
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 356, 679, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 328, 636, 748
Bse3DI GCAATG 2 cut(s) 419, 592
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 3 cut(s) 356, 679, 680
BseGI GGATG 2 cut(s) 184, 293
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 2 cut(s) 419, 592
BseMII CTCAG 4 cut(s) 51, 491, 558, 635
BseNI ACTGG 3 cut(s) 328, 636, 748
BseRI GAGGAG 1 cut(s) 650
BseYI CCCAGC 1 cut(s) 511
BshFI GGCC 5 cut(s) 155, 346, 473, 540, 763
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 5 cut(s) 155, 346, 473, 540, 763
Bsp143I GATC 4 cut(s) 19, 183, 496, 659
BspANI GGCC 5 cut(s) 155, 346, 473, 540, 763
BspCNI CTCAG 4 cut(s) 52, 492, 559, 636
BspLI GGNNCC 2 cut(s) 362, 549
BspPI GGATC 1 cut(s) 667
BsrDI GCAATG 2 cut(s) 419, 592
BsrI ACTGG 3 cut(s) 328, 636, 748
BssECI CCNNGG 3 cut(s) 356, 679, 680
BssMI GATC 4 cut(s) 19, 183, 496, 659
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 1 cut(s) 469
BstDEI CTNAG 6 cut(s) 60, 147, 500, 567, 644, 768
BstF5I GGATG 2 cut(s) 184, 293
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 4 cut(s) 22, 186, 499, 662
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 4 cut(s) 19, 183, 496, 659
BstMWI GCNNNNNNNGC 2 cut(s) 152, 430
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 679
BsuRI GGCC 5 cut(s) 155, 346, 473, 540, 763
BtsCI GGATG 2 cut(s) 184, 293
BtsIMutI CAGTG 2 cut(s) 474, 629
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 128, 345, 539
Csp6I GTAC 3 cut(s) 49, 741, 756
CviAII CATG 2 cut(s) 212, 674
CviQI GTAC 3 cut(s) 49, 741, 756
DdeI CTNAG 6 cut(s) 60, 147, 500, 567, 644, 768
DpnI GATC 4 cut(s) 21, 185, 498, 661
DpnII GATC 4 cut(s) 19, 183, 496, 659
EaeI YGGCCR 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 2 cut(s) 215, 677
FaqI GGGAC 1 cut(s) 662
FatI CATG 2 cut(s) 211, 673
FauNDI CATATG 2 cut(s) 457, 619
FbaI TGATCA 1 cut(s) 183
FokI GGATG 2 cut(s) 191, 280
FspBI CTAG 2 cut(s) 174, 759
GlaI GCGC 1 cut(s) 450
GsaI CCCAGC 1 cut(s) 515
GsuI CTGGAG 1 cut(s) 653
HaeIII GGCC 5 cut(s) 155, 346, 473, 540, 763
HapII CCGG 1 cut(s) 597
HhaI GCGC 1 cut(s) 451
Hin1II CATG 2 cut(s) 215, 677
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 1 cut(s) 392
HpaII CCGG 1 cut(s) 597
HphI GGTGA 2 cut(s) 454, 677
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 3 cut(s) 39, 496, 501
Hpy188III TCNNGA 2 cut(s) 396, 695
Hpy8I GTNNAC 1 cut(s) 480
HpyAV CCTTC 3 cut(s) 145, 530, 692
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 4 cut(s) 193, 230, 293, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 430
HpyF3I CTNAG 6 cut(s) 60, 147, 500, 567, 644, 768
Hsp92II CATG 2 cut(s) 215, 677
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 4 cut(s) 19, 183, 496, 659
LmnI GCTCC 6 cut(s) 112, 309, 335, 366, 563, 701
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 174, 759
MalI GATC 4 cut(s) 21, 185, 498, 661
MboI GATC 4 cut(s) 19, 183, 496, 659
MboII GAAGA 2 cut(s) 58, 759
MluCI AATT 3 cut(s) 158, 187, 648
MmeI TCCRAC 3 cut(s) 155, 185, 313
MnlI CCTC 7 cut(s) 45, 119, 208, 495, 552, 562, 628
MseI TTAA 2 cut(s) 222, 258
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 681
MvaI CCWGG 1 cut(s) 681
MwoI GCNNNNNNNGC 2 cut(s) 152, 430
NdeI CATATG 2 cut(s) 457, 619
NdeII GATC 4 cut(s) 19, 183, 496, 659
NlaIII CATG 2 cut(s) 215, 677
NlaIV GGNNCC 2 cut(s) 362, 549
NmeAIII GCCGAG 1 cut(s) 499
NspI RCATGY 1 cut(s) 677
PasI CCCWGGG 1 cut(s) 680
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 1 cut(s) 392
PscI ACATGT 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 679
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 2 cut(s) 362, 549
PspPI GGNCC 3 cut(s) 128, 345, 539
PsrI GAACNNNNNNTAC 2 cut(s) 32, 64
RsaI GTAC 3 cut(s) 50, 742, 757
RsaNI GTAC 3 cut(s) 49, 741, 756
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 2 cut(s) 222, 258
Sau3AI GATC 4 cut(s) 19, 183, 496, 659
Sau96I GGNCC 3 cut(s) 128, 345, 539
ScaI AGTACT 2 cut(s) 50, 757
ScrFI CCNGG 1 cut(s) 681
SetI ASST 9 cut(s) 45, 61, 130, 219, 278, 513, 526, 568, 706
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 3 cut(s) 158, 187, 648
SspMI CTAG 2 cut(s) 174, 759
StyD4I CCNGG 1 cut(s) 679
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 469
TasI AATT 3 cut(s) 158, 187, 648
TatI WGTACW 2 cut(s) 48, 755
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 222, 258
Tru9I TTAA 2 cut(s) 222, 258
TscAI CASTG 2 cut(s) 474, 636
TspDTI ATGAA 2 cut(s) 549, 684
TspRI CASTG 2 cut(s) 474, 636
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XspI CTAG 2 cut(s) 174, 759
ZrmI AGTACT 2 cut(s) 50, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.