Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Forward (+)

27784 .. 29028

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggcacattttgctcataccagcaccaccgctattcttgctttcctcaatttccttcttcttcttccacattcttactcttctatgccaaagtcagatgttgatctcttggagtttcctttgaaccttgagtacttggaagctgagttcttcctgtatggctctttgggttttggcttggacaaagttgcttcaaacttgacattgggaggtccaacaccctttggtgctaagaaagccaaattagaccctttcactagggatgtgatcaatttgcatggcaaaagttggacacttgaggagaggggatttgaactcgggacctcgtttttgtttgcagagctatttttcagtgaaaggccaccatttaatccttatgccaatagcttgaactatctccttgcatcctatttgatcccttatgctggtcttactgcttgttgcgggtcttttggctgtggaatcaggacaagatgtgtgattagaacattgctgtataagaatgctctggtgagagtgcacccatatggaataacagtggtcgagtttacaaatcggctttctgacctgaggaacaagctgggacagacaggttcgaaagatgaaggccctctggttccaaaatataaaggagctgagggaaacatcattggcaatgttcttgccggaaatgcatattcagtagcatatgacaggagtcacaggacaccggaggagatactaagaattgtatatggatcaggtgatgaacatgtccctgggggtttctatcctaaaagagctgatggtcgtattgcaaaatctcatctgcaaaatggtactggaagaaatagtactaggccatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

282

Amino Acids

31.07

Weight (kDa)

8.78

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 444
AclWI	GGATC	2 cut(s)	409, 745
AfaI	GTAC	3 cut(s)	134, 820, 835
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	751
AgsI	TTSAA	4 cut(s)	124, 195, 314, 391
AjnI	CCWGG	1 cut(s)	757
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	6 cut(s)	143, 343, 387, 580, 635, 782
AluI	AGCT	6 cut(s)	143, 343, 387, 580, 635, 782
Alw21I	GWGCWC	1 cut(s)	522
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	409, 745
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	359, 607, 839
ApaLI	GTGCAC	1 cut(s)	518
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AspS9I	GGNCC	3 cut(s)	212, 321, 608
AsuHPI	GGTGA	2 cut(s)	523, 755
AsuII	TTCGAA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	212, 321
AxyI	CCTNAGG	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	636
BccI	CCATC	1 cut(s)	779
BciT130I	CCWGG	1 cut(s)	759
BclI	TGATCA	1 cut(s)	267
BfaI	CTAG	2 cut(s)	258, 837
BmcAI	AGTACT	2 cut(s)	134, 835
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	2 cut(s)	212, 321
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	212, 321, 608
BmiI	GGNNCC	2 cut(s)	322, 618
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	1 cut(s)	413
BoxI	GACNNNNGTC	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	149, 317
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	757, 758
BsaWI	WCCGGW	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	826
Bse21I	CCTNAGG	1 cut(s)	569
Bse3DI	GCAATG	2 cut(s)	488, 661
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	757, 758
BseGI	GGATG	2 cut(s)	268, 404
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	2 cut(s)	488, 661
BseMII	CTCAG	3 cut(s)	135, 560, 627
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	2 cut(s)	314, 728
BseSI	GKGCMC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	580
BshFI	GGCC	3 cut(s)	361, 609, 841
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	666, 710
BslFI	GGGAC	3 cut(s)	334, 597, 740
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmFI	GGGAC	3 cut(s)	334, 597, 740
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	361, 609, 841
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	103, 267, 414, 737
BspACI	CCGC	2 cut(s)	30, 444
BspANI	GGCC	3 cut(s)	361, 609, 841
BspCNI	CTCAG	3 cut(s)	136, 561, 628
BspLI	GGNNCC	2 cut(s)	322, 618
BspPI	GGATC	2 cut(s)	409, 745
BspT104I	TTCGAA	1 cut(s)	596
BsrDI	GCAATG	2 cut(s)	488, 661
BsrI	ACTGG	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	757, 758
BssMI	GATC	4 cut(s)	103, 267, 414, 737
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	596
BstDEI	CTNAG	6 cut(s)	144, 231, 569, 636, 722, 846
BstF5I	GGATG	2 cut(s)	268, 404
BstKTI	GATC	4 cut(s)	106, 270, 417, 740
BstMBI	GATC	4 cut(s)	103, 267, 414, 737
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 38, 236, 671
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	755
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	757
BstSLI	GKGCMC	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	361, 609, 841
BtsCI	GGATG	2 cut(s)	268, 404
BtsIMutI	CAGTG	2 cut(s)	358, 543
Cfr13I	GGNCC	3 cut(s)	212, 321, 608
Csp6I	GTAC	3 cut(s)	133, 819, 834
CviAII	CATG	2 cut(s)	278, 752
CviQI	GTAC	3 cut(s)	133, 819, 834
DdeI	CTNAG	6 cut(s)	144, 231, 569, 636, 722, 846
DpnI	GATC	4 cut(s)	105, 269, 416, 739
DpnII	GATC	4 cut(s)	103, 267, 414, 737
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	212, 321
Eco81I	CCTNAGG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	321, 608
EcoRII	CCWGG	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	676
FaeI	CATG	2 cut(s)	281, 755
FaqI	GGGAC	3 cut(s)	334, 597, 740
FatI	CATG	2 cut(s)	277, 751
FauI	CCCGC	1 cut(s)	437
FauNDI	CATATG	2 cut(s)	526, 688
FbaI	TGATCA	1 cut(s)	267
FokI	GGATG	2 cut(s)	275, 391
FspBI	CTAG	2 cut(s)	258, 837
GsaI	CCCAGC	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	361, 609, 841
HapII	CCGG	2 cut(s)	666, 710
Hin1II	CATG	2 cut(s)	281, 755
HinfI	GANTC	2 cut(s)	462, 697
HpaII	CCGG	2 cut(s)	666, 710
HphI	GGTGA	2 cut(s)	523, 755
Hpy166II	GTNNAC	2 cut(s)	520, 549
Hpy188I	TCNGA	2 cut(s)	97, 565
Hpy188III	TCNNGA	2 cut(s)	319, 466
Hpy8I	GTNNAC	2 cut(s)	520, 549
HpyAV	CCTTC	2 cut(s)	65, 599
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4V	TGCA	7 cut(s)	277, 338, 404, 520, 674, 797, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 38, 236, 671
HpyF3I	CTNAG	6 cut(s)	144, 231, 569, 636, 722, 846
Hsp92II	CATG	2 cut(s)	281, 755
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	103, 267, 414, 737
LmnI	GCTCC	1 cut(s)	632
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	2 cut(s)	258, 837
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	4 cut(s)	105, 269, 416, 739
MboI	GATC	4 cut(s)	103, 267, 414, 737
MboII	GAAGA	6 cut(s)	50, 53, 56, 72, 142, 837
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	4 cut(s)	49, 242, 271, 726
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	2 cut(s)	239, 269
MnlI	CCTC	9 cut(s)	56, 203, 292, 297, 334, 564, 621, 631, 706
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	2 cut(s)	666, 710
MspR9I	CCNGG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	759
MwoI	GCNNNNNNNGC	4 cut(s)	11, 38, 236, 671
NdeI	CATATG	2 cut(s)	526, 688
NdeII	GATC	4 cut(s)	103, 267, 414, 737
NlaIII	CATG	2 cut(s)	281, 755
NlaIV	GGNNCC	2 cut(s)	322, 618
NmuCI	GTSAC	1 cut(s)	698
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	596
PasI	CCCWGGG	1 cut(s)	758
PciI	ACATGT	1 cut(s)	751
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
PpuMI	RGGWCCY	1 cut(s)	321
PscI	ACATGT	1 cut(s)	751
PshAI	GACNNNNGTC	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	2 cut(s)	322, 618
PspPI	GGNCC	3 cut(s)	212, 321, 608
PspPPI	RGGWCCY	1 cut(s)	321
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
RsaI	GTAC	3 cut(s)	134, 820, 835
RsaNI	GTAC	3 cut(s)	133, 819, 834
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	103, 267, 414, 737
Sau96I	GGNCC	3 cut(s)	212, 321, 608
ScaI	AGTACT	2 cut(s)	134, 835
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	2 cut(s)	212, 321
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	128, 296
SmoI	CTYRAG	2 cut(s)	128, 296
Sse9I	AATT	4 cut(s)	49, 242, 271, 726
SsiI	CCGC	2 cut(s)	30, 444
SspMI	CTAG	2 cut(s)	258, 837
StyD4I	CCNGG	1 cut(s)	757
TaaI	ACNGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	543, 596
TasI	AATT	4 cut(s)	49, 242, 271, 726
TatI	WGTACW	2 cut(s)	132, 833
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	358, 543
TseFI	GTSAC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	2 cut(s)	618, 762
TspRI	CASTG	2 cut(s)	358, 543
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	212, 321
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	2 cut(s)	258, 837
ZrmI	AGTACT	2 cut(s)	134, 835
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.