Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Forward (+)

9030636 .. 9032016

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCCACATTTGCTTATGCCACCACCACCGCCATTGTCTTCCTCATCCTCCTCCCGCTGTCCTGCTCTTCCGAATCGATTTTGCACAACCATCACCACGGCGCCTCCTCGTCCGTCCAGAAATCGGACGTCGATCTTTTGGAGTTTCCTTTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTTTGTATGGATCTTTGGGGTATGGCTTGGATAAAGTTTATCCGAGCTTAGCCCAAGGAGGTCCGTCTCCCATTGGTGCCAAAAAGGCACATTTGGACGACTTCACTAGAGATGTCATCGAGCAATTTGGATGGCAAGAAGTTGGACACTTGAGAGCTATTAAGAAAACTGTGAAGGGTTTCCCAAGGCCATTGTTGAATATAAGTGCAGCATCATTTGCTCATGTGTTTGATTCTGCATTTGGGAGTCCCTTAAATCCACCATTTGACCCTTATGCCAATTCAATCAACTATCTCCTTGCATCCTATCTCATTCCTTATGTTGGTCTCACTGGCTATGTTGGTGCAAGCCCTAAGCTCCAAGGTGCTACTTCCAAAAGGCTAGTTGCAGGTCTTTTGGGTGCTGAAGCAGGCCAAAATGCAGTGATTCGAGCATTGCTATACGAGCGTGCAAAGTTGAAAGTAGAACCATATGGCATTACAGTGGCTGAGTTCACAACTCTCATTTCGGAACTAAGGAATAATCTAGGACACGAAGGTTTGAAAGATGAAGGCCTTGTGGTTCCCCAAGACTTGGGTGCTGAGGGAAAAGTAAGCGGCAATATTCTTGCCGCAGACGAGTACTCAGTTGCATATGATAGGACTCCGGAGGAGATACTAAGGATCGTATACGGTAGCGGTAATGAACGTGTACCTGGCGGTATCTACCCTAAAGGAGCTGACGGCCGGATTGCTAAATCTTATTTGAAAAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

313

Amino Acids

33.69

Weight (kDa)

5.93

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	560
AccB1I	GGYRCC	2 cut(s)	101, 257
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	849
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	6 cut(s)	30, 56, 777, 792, 858, 879
AclWI	GGATC	2 cut(s)	199, 851
AcoI	YGGCCR	2 cut(s)	3, 904
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	102, 129
AfaI	GTAC	2 cut(s)	803, 873
AfiI	CCNNNNNNNGG	3 cut(s)	124, 503, 754
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	6 cut(s)	154, 379, 465, 640, 724, 928
AjnI	CCWGG	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	173, 228, 338, 538, 899
AluI	AGCT	5 cut(s)	173, 228, 338, 538, 899
Alw26I	GTCTC	2 cut(s)	252, 512
AlwI	GGATC	2 cut(s)	199, 851
AlwNI	CAGNNNCTG	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	5 cut(s)	3, 368, 592, 733, 904
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	101, 257
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	99, 306
BceAI	ACGGC	2 cut(s)	115, 919
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	2 cut(s)	252, 512
BfaI	CTAG	3 cut(s)	288, 563, 707
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	560
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	390, 778, 792
BlpI	GCTNAGC	1 cut(s)	229
BlsI	GCNGC	3 cut(s)	391, 779, 793
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	103, 259, 744
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	401, 491
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	2 cut(s)	534, 762
Bpu1102I	GCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	77
BsaHI	GRCGYC	2 cut(s)	102, 129
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	4 cut(s)	97, 235, 365, 541
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 503, 754
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	1 cut(s)	876
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	4 cut(s)	97, 235, 365, 541
BseGI	GGATG	3 cut(s)	45, 317, 482
BseLI	CCNNNNNNNGG	3 cut(s)	124, 503, 754
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	4 cut(s)	165, 660, 753, 819
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	3 cut(s)	41, 97, 845
BseX3I	CGGCCG	1 cut(s)	904
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	907
BshFI	GGCC	5 cut(s)	5, 370, 594, 735, 906
BshNI	GGYRCC	2 cut(s)	101, 257
BshVI	ATCGAT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	907
BsiSI	CCGG	2 cut(s)	827, 907
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	124, 503, 754
BsmAI	GTCTC	2 cut(s)	252, 512
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	5 cut(s)	5, 370, 594, 735, 906
Bso31I	GGTCTC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	133, 191, 843
Bsp1720I	GCTNAGC	1 cut(s)	229
BspACI	CCGC	6 cut(s)	30, 56, 777, 792, 858, 879
BspANI	GGCC	5 cut(s)	5, 370, 594, 735, 906
BspCNI	CTCAG	4 cut(s)	166, 661, 754, 818
BspDI	ATCGAT	1 cut(s)	77
BspEI	TCCGGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	103, 259, 744
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	199, 851
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	2 cut(s)	101, 257
BspTNI	GGTCTC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	97, 235, 365, 541
BssMI	GATC	3 cut(s)	133, 191, 843
BssNAI	GTATAC	1 cut(s)	850
BssNI	GRCGYC	2 cut(s)	102, 129
BssT1I	CCWWGG	3 cut(s)	235, 365, 541
Bst1107I	GTATAC	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	3 cut(s)	352, 664, 854
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	2 cut(s)	102, 129
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	529, 592, 630
BstDEI	CTNAG	8 cut(s)	174, 229, 534, 669, 695, 762, 805, 839
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	45, 317, 482
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	136, 194, 846
BstMAI	GTCTC	2 cut(s)	252, 512
BstMBI	GATC	3 cut(s)	133, 191, 843
BstMCI	CGRYCG	1 cut(s)	907
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 266, 398, 625
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	850
BstZI	CGGCCG	1 cut(s)	904
Bsu15I	ATCGAT	1 cut(s)	77
BsuRI	GGCC	5 cut(s)	5, 370, 594, 735, 906
BsuTUI	ATCGAT	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	45, 317, 482
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	510, 609, 669
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	3 cut(s)	529, 592, 630
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	802, 872
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	2 cut(s)	802, 872
DdeI	CTNAG	8 cut(s)	174, 229, 534, 669, 695, 762, 805, 839
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	135, 193, 845
DpnII	GATC	3 cut(s)	133, 191, 843
EaeI	YGGCCR	2 cut(s)	3, 904
EagI	CGGCCG	1 cut(s)	904
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	904
Eco130I	CCWWGG	3 cut(s)	235, 365, 541
Eco147I	AGGCCT	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	242
Eco52I	CGGCCG	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	874
EcoT14I	CCWWGG	3 cut(s)	235, 365, 541
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	3 cut(s)	235, 365, 541
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	1 cut(s)	407
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	2 cut(s)	652, 814
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	3 cut(s)	390, 778, 792
FokI	GGATG	3 cut(s)	32, 324, 469
Fsp4HI	GCNGC	3 cut(s)	390, 778, 792
FspBI	CTAG	3 cut(s)	288, 563, 707
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	390, 778, 792
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	5 cut(s)	5, 370, 594, 735, 906
HapII	CCGG	2 cut(s)	827, 907
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	102, 129
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	5 cut(s)	74, 413, 427, 607, 823
HpaII	CCGG	2 cut(s)	827, 907
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	675, 850, 872
Hpy188I	TCNGA	4 cut(s)	73, 127, 225, 691
Hpy188III	TCNNGA	2 cut(s)	118, 827
Hpy8I	GTNNAC	3 cut(s)	675, 850, 872
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	349, 710, 725
HpyCH4III	ACNGT	3 cut(s)	352, 664, 854
HpyCH4IV	ACGT	2 cut(s)	129, 868
HpyCH4V	TGCA	9 cut(s)	85, 389, 419, 482, 527, 569, 602, 632, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 266, 398, 625
HpyF3I	CTNAG	8 cut(s)	174, 229, 534, 669, 695, 762, 805, 839
HpySE526I	ACGT	2 cut(s)	129, 868
Hsp92I	GRCGYC	2 cut(s)	102, 129
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	133, 191, 843
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	543, 896
LpnPI	CCDG	9 cut(s)	76, 131, 498, 555, 576, 840, 861, 888, 920
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	401, 491
MaeI	CTAG	3 cut(s)	288, 563, 707
MaeII	ACGT	2 cut(s)	129, 868
MalI	GATC	3 cut(s)	135, 193, 845
MboI	GATC	3 cut(s)	133, 191, 843
MboII	GAAGA	2 cut(s)	31, 60
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	154, 305, 460
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	436, 817
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	53, 59, 62, 115, 118, 233, 757, 823
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	342, 434
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	2 cut(s)	827, 907
MspR9I	CCNGG	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	4 cut(s)	11, 266, 398, 625
NarI	GGCGCC	1 cut(s)	102
NdeI	CATATG	2 cut(s)	652, 814
NdeII	GATC	3 cut(s)	133, 191, 843
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	3 cut(s)	103, 259, 744
PceI	AGGCCT	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	74, 413, 607
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	3 cut(s)	391, 779, 793
PleI	GAGTC	2 cut(s)	435, 817
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	2 cut(s)	435, 817
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	3 cut(s)	103, 259, 744
PspPI	GGNCC	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	803, 873
RsaNI	GTAC	2 cut(s)	802, 872
RseI	CAYNNNNRTG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	342, 434
SatI	GCNGC	3 cut(s)	390, 778, 792
Sau3AI	GATC	3 cut(s)	133, 191, 843
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	2 cut(s)	436, 817
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	401, 491
SfoI	GGCGCC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	154, 305, 460
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	6 cut(s)	30, 56, 777, 792, 858, 879
SspDI	GGCGCC	1 cut(s)	101
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	3 cut(s)	288, 563, 707
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	874
StyI	CCWWGG	3 cut(s)	235, 365, 541
TaaI	ACNGT	3 cut(s)	352, 664, 854
TaiI	ACGT	2 cut(s)	132, 871
TaqI	TCGA	4 cut(s)	77, 132, 300, 610
TasI	AATT	3 cut(s)	154, 305, 460
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	2 cut(s)	780, 794
TfiI	GAWTC	3 cut(s)	74, 413, 607
Tru1I	TTAA	2 cut(s)	342, 434
Tru9I	TTAA	2 cut(s)	342, 434
TscAI	CASTG	3 cut(s)	517, 609, 669
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	744, 879
TspGWI	ACGGA	2 cut(s)	103, 234
TspRI	CASTG	3 cut(s)	517, 609, 669
Van91I	CCANNNNNTGG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	3 cut(s)	288, 563, 707
ZraI	GACGTC	1 cut(s)	130
ZrmI	AGTACT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.