Rh4AG265100

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003995
Physical Location & Seq
Reverse (-)
58097676 .. 58100288
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG265100.1

Sequence Viewer

Length: 1035 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTACTCTTGCTTTCCTCATCCTCCTCCTTCTTTACTCTTCTGAGTCCATTTTGAGTGATGAGTATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCACCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAAACGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCGCCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGTTGTATGAGCAGGCTCTGGTGAAAGTGCATCCATATGATATATCAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGAAAAGCAGGTTTGAAAGATGAAGGCCTTGTGGTTCCAAAATATGAAGGAGCTGAGGGAAAAATCAGTGGCAATGTTCTTGCCGGAGACGAATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTGAGGATTGTATATGGATCAGTTTTTAGGGGGAAAAAAATGCCCGTGAGCTGTGAATTGTTGGGACAAAATGGTCAAAGAGCAAAGCAAATTGGGGGACAAAATGGGAAACACACCATTCATCAGAGAGTCTCTATCTTGAAACATACCAGAGCAAAATCGTCCAATTTCTATTCATTGAATATTAATGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

344

Amino Acids

37.75

Weight (kDa)

8.65

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 1.5e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 909
Acc36I ACCTGC 2 cut(s) 560, 707
AciI CCGC 2 cut(s) 30, 440
AclWI GGATC 3 cut(s) 443, 487, 862
AcoI YGGCCR 1 cut(s) 666
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 5 cut(s) 436, 469, 724, 979, 1018
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 173, 338, 465, 706, 761, 888
AluI AGCT 6 cut(s) 173, 338, 465, 706, 761, 888
Alw26I GTCTC 2 cut(s) 789, 973
AlwI GGATC 3 cut(s) 443, 487, 862
AlwNI CAGNNNCTG 1 cut(s) 634
AoxI GGCC 4 cut(s) 97, 368, 666, 733
AseI ATTAAT 1 cut(s) 1023
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 242, 277
AsuHPI GGTGA 2 cut(s) 102, 649
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 242, 277
BbvCI CCTCAGC 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 789, 973
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 560, 707
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 242, 277
BmgT120I GGNCC 2 cut(s) 242, 277
BmiI GGNNCC 3 cut(s) 279, 362, 744
BmsI GCATC 3 cut(s) 491, 589, 655
Bpu10I CCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 122, 179, 352
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 253, 365, 541
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 279, 517
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 253, 365, 541
BseGI GGATG 4 cut(s) 48, 298, 482, 646
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 5 cut(s) 63, 165, 686, 753, 830
BseNI ACTGG 2 cut(s) 279, 517
BseRI GAGGAG 2 cut(s) 44, 845
BseYI CCCAGC 1 cut(s) 706
BshFI GGCC 4 cut(s) 99, 370, 668, 735
BsiSI CCGG 2 cut(s) 792, 827
BslFI GGGAC 2 cut(s) 915, 948
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 2 cut(s) 789, 973
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 2 cut(s) 915, 948
BsnI GGCC 4 cut(s) 99, 370, 668, 735
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 5 cut(s) 133, 448, 492, 691, 854
BspACI CCGC 2 cut(s) 30, 440
BspANI GGCC 4 cut(s) 99, 370, 668, 735
BspCNI CTCAG 5 cut(s) 64, 166, 687, 754, 831
BspLI GGNNCC 3 cut(s) 279, 362, 744
BspMI ACCTGC 2 cut(s) 560, 707
BspPI GGATC 3 cut(s) 443, 487, 862
BspT104I TTCGAA 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 2 cut(s) 279, 517
BssECI CCNNGG 3 cut(s) 253, 365, 541
BssMI GATC 5 cut(s) 133, 448, 492, 691, 854
BssT1I CCWWGG 3 cut(s) 253, 365, 541
Bst4CI ACNGT 4 cut(s) 306, 352, 375, 1032
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
BstF5I GGATG 4 cut(s) 48, 298, 482, 646
BstKTI GATC 5 cut(s) 136, 451, 495, 694, 857
BstMAI GTCTC 2 cut(s) 789, 973
BstMBI GATC 5 cut(s) 133, 448, 492, 691, 854
BstMWI GCNNNNNNNGC 3 cut(s) 11, 38, 266
BsuRI GGCC 4 cut(s) 99, 370, 668, 735
BtsCI GGATG 4 cut(s) 48, 298, 482, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 4 cut(s) 357, 609, 669, 781
BveI ACCTGC 2 cut(s) 560, 707
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 242, 277
Csp6I GTAC 2 cut(s) 116, 163
CviAII CATG 1 cut(s) 312
CviQI GTAC 2 cut(s) 116, 163
DdeI CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
DpnI GATC 5 cut(s) 135, 450, 494, 693, 856
DpnII GATC 5 cut(s) 133, 448, 492, 691, 854
DrdI GACNNNNNNGTC 1 cut(s) 909
DseDI GACNNNNNNGTC 1 cut(s) 909
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 253, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 242, 277
EcoT14I CCWWGG 3 cut(s) 253, 365, 541
ErhI CCWWGG 3 cut(s) 253, 365, 541
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 1 cut(s) 315
FaqI GGGAC 2 cut(s) 915, 948
FatI CATG 1 cut(s) 311
FauNDI CATATG 2 cut(s) 652, 814
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 4 cut(s) 35, 305, 469, 633
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 710
HaeIII GGCC 4 cut(s) 99, 370, 668, 735
HapII CCGG 2 cut(s) 792, 827
Hin1II CATG 1 cut(s) 315
HinfI GANTC 6 cut(s) 74, 104, 122, 587, 607, 966
HpaII CCGG 2 cut(s) 792, 827
HphI GGTGA 2 cut(s) 102, 649
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 6 cut(s) 73, 127, 153, 691, 696, 963
Hpy188III TCNNGA 2 cut(s) 591, 976
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 3 cut(s) 68, 725, 749
HpyCH4III ACNGT 4 cut(s) 306, 352, 375, 1032
HpyCH4IV ACGT 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 38, 266
HpyF3I CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 315
Kzo9I GATC 5 cut(s) 133, 448, 492, 691, 854
LmnI GCTCC 2 cut(s) 524, 758
LweI GCATC 3 cut(s) 491, 589, 655
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 405
MalI GATC 5 cut(s) 135, 450, 494, 693, 856
MboI GATC 5 cut(s) 133, 448, 492, 691, 854
MboII GAAGA 2 cut(s) 60, 172
MluCI AATT 3 cut(s) 893, 927, 1003
MlyI GAGTC 3 cut(s) 83, 113, 975
MmeI TCCRAC 3 cut(s) 304, 357, 502
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 4 cut(s) 342, 383, 411, 1023
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 2 cut(s) 792, 827
MwoI GCNNNNNNNGC 3 cut(s) 11, 38, 266
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 5 cut(s) 133, 448, 492, 691, 854
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 3 cut(s) 279, 362, 744
NmeAIII GCCGAG 1 cut(s) 694
NspV TTCGAA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 122, 587, 607
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 3 cut(s) 82, 112, 974
PpsI GAGTC 3 cut(s) 82, 112, 974
PshBI ATTAAT 1 cut(s) 1023
PspFI CCCAGC 1 cut(s) 706
PspN4I GGNNCC 3 cut(s) 279, 362, 744
PspPI GGNCC 2 cut(s) 242, 277
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PstNI CAGNNNCTG 1 cut(s) 634
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 4 cut(s) 342, 383, 411, 1023
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 5 cut(s) 133, 448, 492, 691, 854
Sau96I GGNCC 2 cut(s) 242, 277
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 3 cut(s) 83, 113, 975
SfaNI GCATC 3 cut(s) 491, 589, 655
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 2 cut(s) 242, 277
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 3 cut(s) 101, 158, 331
SmoI CTYRAG 3 cut(s) 101, 158, 331
Sse9I AATT 3 cut(s) 893, 927, 1003
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 2 cut(s) 30, 440
SspI AATATT 2 cut(s) 803, 1021
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 735
StyI CCWWGG 3 cut(s) 253, 365, 541
TaaI ACNGT 4 cut(s) 306, 352, 375, 1032
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 610
TasI AATT 3 cut(s) 893, 927, 1003
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 122, 587, 607
Tru1I TTAA 4 cut(s) 342, 383, 411, 1023
Tru9I TTAA 4 cut(s) 342, 383, 411, 1023
TscAI CASTG 4 cut(s) 357, 609, 669, 781
TspDTI ATGAA 4 cut(s) 744, 768, 947, 1002
TspRI CASTG 4 cut(s) 357, 609, 669, 781
VpaK11BI GGWCC 2 cut(s) 242, 277
VspI ATTAAT 1 cut(s) 1023
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.