AT1G47980

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003995
Physical Location & Seq
Reverse (-)
17691811 .. 17693887
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47980.1

Sequence Viewer

Length: 948 bp
ATGGCACTCACAAAAGAGAGAAGAAGCTTGTTGGTTTCAATGGTGTTGGTGTTCTTCTTCTTCAACTTTCACCATCTTCAAGTCACGAGTTGTCCAGATCAGGCGACGACAAACTGTACGGACCAGGACAGGAAATTATTGGAGTTTCCATTGAATTTGGAGTACCTTGAAGCTGAGTTTTTCTTGTTCGGAGCGTTAGGGCTTGGTCTTGATAAAGTCGCACCAAATCTAACAATGGGAGGGCCAAGTCCTATTGGAGCTCAGAAAGCCAATCTCGATCCTTTGACAAGAGATATTATTTTGCAGTTTGCTTGGCAAGAGGTTGGCCACTTGAGGGCAATCAAGAAAACGGTGAAAGGATTTGCAAGGCCACAACTTGATTTGAGTAAGAAAGCATTTGCTAAAGTGATGGATAAAGCATTTGGAGTAAAATTTGTGCCGCCGTTCAATCCTTATGCCAATTCTTACAATTACCTCATTGCATCGTATTTGGTCCCTTATGTTGGTCTCACCGGATACGTTGGCGCTAACCCTAAACTGCAATGTCCAGCCTCAAGAAAGTTAGTAGCAGGACTTTTGGGAGTAGAATCGGGTCAAGACGCGGTGATTAGAGGTATGTTATATGCTCGAGCGGCACACATAGTCTATCCTTATGGTGTCACGGTTGCGGCTTTCACGGATAAGATTTCGGATCTAAGGAACAAATTGGGAAAAGCGGGTGTGAAAGATGAGGGATTGATCGTACCTAAATTCATGGGTGCAGAAGGACAAGTGATTGGGAATGTATTGGTCGGTAATGAGCTCTCGCTTTCGTTTGATAGAACACCTGAGGAGATTCTACGGATTGTGTATGGAAGTGGAAATGAAAGTGTTCCCGGTGGATTTTACCCTAAAGGAGCGGATGGAGAAATCGCTAAGTCTTATTTGGTTACTGTCGGGAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

315

Amino Acids

34.29

Weight (kDa)

8.77

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 43 - 208 1.9e-35 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 632, 899
AccII CGCG 1 cut(s) 602
AciI CCGC 6 cut(s) 440, 602, 632, 668, 716, 899
AclWI GGATC 2 cut(s) 272, 699
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 3 cut(s) 154, 431, 749
AfaI GTAC 3 cut(s) 118, 164, 744
AfiI CCNNNNNNNGG 2 cut(s) 334, 503
AgsI TTSAA 6 cut(s) 39, 64, 80, 154, 170, 448
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 4 cut(s) 27, 173, 260, 802
AluI AGCT 4 cut(s) 27, 173, 260, 802
Alw21I GWGCWC 2 cut(s) 262, 804
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 2 cut(s) 272, 699
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 3 cut(s) 242, 325, 368
ApoI RAATTY 3 cut(s) 154, 431, 749
Asp700I GAANNNNTTC 1 cut(s) 870
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 3 cut(s) 121, 242, 493
AsuC2I CCSGG 1 cut(s) 876
AsuHPI GGTGA 4 cut(s) 62, 364, 502, 616
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 2 cut(s) 121, 493
AxyI CCTNAGG 1 cut(s) 828
BalI TGGCCA 1 cut(s) 327
BanII GRGCYC 2 cut(s) 262, 804
BauI CACGAG 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 262, 804
BccI CCATC 3 cut(s) 81, 403, 896
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 509
BcnI CCSGG 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 528
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 3 cut(s) 440, 633, 669
BlsI GCNGC 3 cut(s) 441, 634, 670
Bme1390I CCNGG 2 cut(s) 125, 876
Bme18I GGWCC 2 cut(s) 121, 493
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 3 cut(s) 121, 242, 493
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 2 cut(s) 125, 876
BmsI GCATC 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 352, 538
BpuMI CCSGG 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 503
Bse21I CCTNAGG 1 cut(s) 828
Bse3DI GCAATG 2 cut(s) 477, 548
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 907
BseLI CCNNNNNNNGG 2 cut(s) 334, 503
BseMI GCAATG 2 cut(s) 477, 548
BseMII CTCAG 3 cut(s) 165, 275, 819
BseRI GAGGAG 1 cut(s) 845
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 602
BshFI GGCC 3 cut(s) 244, 327, 370
BsiHKAI GWGCWC 2 cut(s) 262, 804
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 2 cut(s) 513, 876
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 2 cut(s) 334, 503
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 3 cut(s) 244, 327, 370
Bso31I GGTCTC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 262, 804
Bsp143I GATC 4 cut(s) 97, 277, 691, 738
BspACI CCGC 6 cut(s) 440, 602, 632, 668, 716, 899
BspANI GGCC 3 cut(s) 244, 327, 370
BspCNI CTCAG 3 cut(s) 166, 274, 820
BspFNI CGCG 1 cut(s) 602
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 2 cut(s) 272, 699
BspTNI GGTCTC 1 cut(s) 512
BsrBI CCGCTC 2 cut(s) 632, 899
BsrDI GCAATG 2 cut(s) 477, 548
BssMI GATC 4 cut(s) 97, 277, 691, 738
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 4 cut(s) 116, 352, 664, 934
BstDEI CTNAG 5 cut(s) 174, 261, 695, 828, 915
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 1 cut(s) 602
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 4 cut(s) 100, 280, 694, 741
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 4 cut(s) 97, 277, 691, 738
BstMWI GCNNNNNNNGC 2 cut(s) 266, 632
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 123, 874
BstUI CGCG 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
Bsu36I CCTNAGG 1 cut(s) 828
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 3 cut(s) 244, 327, 370
BtsCI GGATG 1 cut(s) 907
CfoI GCGC 1 cut(s) 527
Cfr13I GGNCC 3 cut(s) 121, 242, 493
CseI GACGC 1 cut(s) 608
Csp6I GTAC 3 cut(s) 117, 163, 743
CviAII CATG 1 cut(s) 754
CviQI GTAC 3 cut(s) 117, 163, 743
DdeI CTNAG 5 cut(s) 174, 261, 695, 828, 915
DpnI GATC 4 cut(s) 99, 279, 693, 740
DpnII GATC 4 cut(s) 97, 277, 691, 738
EaeI YGGCCR 1 cut(s) 325
Ecl136II GAGCTC 2 cut(s) 260, 802
Eco24I GRGCYC 2 cut(s) 262, 804
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 2 cut(s) 121, 493
Eco53kI GAGCTC 2 cut(s) 260, 802
Eco81I CCTNAGG 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 627
EcoICRI GAGCTC 2 cut(s) 260, 802
EcoRII CCWGG 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 262, 804
FaeI CATG 1 cut(s) 757
FaiI YATR 9 cut(s) 456, 501, 617, 622, 624, 641, 654, 755, 852
FaqI GGGAC 1 cut(s) 479
FatI CATG 1 cut(s) 753
FauI CCCGC 1 cut(s) 709
Fnu4HI GCNGC 3 cut(s) 440, 633, 669
FokI GGATG 1 cut(s) 914
FriOI GRGCYC 2 cut(s) 262, 804
Fsp4HI GCNGC 3 cut(s) 440, 633, 669
GlaI GCGC 1 cut(s) 526
GluI GCNGC 3 cut(s) 440, 633, 669
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 3 cut(s) 244, 327, 370
HapII CCGG 2 cut(s) 513, 876
HgaI GACGC 1 cut(s) 608
HhaI GCGC 1 cut(s) 527
Hin1II CATG 1 cut(s) 757
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 587, 835
HpaII CCGG 2 cut(s) 513, 876
HphI GGTGA 4 cut(s) 62, 364, 502, 616
Hpy188I TCNGA 3 cut(s) 191, 264, 691
Hpy188III TCNNGA 8 cut(s) 85, 95, 209, 275, 343, 555, 596, 937
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 758
HpyCH4III ACNGT 4 cut(s) 116, 352, 664, 934
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 304, 365, 482, 541, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 632
HpyF3I CTNAG 5 cut(s) 174, 261, 695, 828, 915
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 1 cut(s) 757
HspAI GCGC 1 cut(s) 525
Kzo9I GATC 4 cut(s) 97, 277, 691, 738
LmnI GCTCC 3 cut(s) 191, 257, 896
LweI GCATC 1 cut(s) 491
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 82, 658, 928
MalI GATC 4 cut(s) 99, 279, 693, 740
MbiI CCGCTC 2 cut(s) 632, 899
MboI GATC 4 cut(s) 97, 277, 691, 738
MboII GAAGA 5 cut(s) 33, 46, 49, 52, 68
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 2 cut(s) 262, 804
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 7 cut(s) 134, 154, 431, 460, 469, 704, 749
MluNI TGGCCA 1 cut(s) 327
MnlI CCTC 8 cut(s) 233, 313, 327, 485, 562, 605, 724, 823
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 870
MscI TGGCCA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 327
MspI CCGG 2 cut(s) 513, 876
MspR9I CCNGG 2 cut(s) 125, 876
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 2 cut(s) 266, 632
NciI CCSGG 1 cut(s) 876
NdeII GATC 4 cut(s) 97, 277, 691, 738
NlaIII CATG 1 cut(s) 757
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 82, 658
PaeR7I CTCGAG 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 870
PfeI GAWTC 2 cut(s) 587, 835
PkrI GCNGC 3 cut(s) 441, 634, 670
Psp124BI GAGCTC 2 cut(s) 262, 804
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 121, 242, 493
PspXI VCTCGAGB 1 cut(s) 627
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 3 cut(s) 118, 164, 744
RsaNI GTAC 3 cut(s) 117, 163, 743
SacI GAGCTC 2 cut(s) 262, 804
SatI GCNGC 3 cut(s) 440, 633, 669
Sau3AI GATC 4 cut(s) 97, 277, 691, 738
Sau96I GGNCC 3 cut(s) 121, 242, 493
ScrFI CCNGG 2 cut(s) 125, 876
SduI GDGCHC 2 cut(s) 262, 804
SfaNI GCATC 1 cut(s) 491
Sfr274I CTCGAG 1 cut(s) 627
SinI GGWCC 2 cut(s) 121, 493
SlaI CTCGAG 1 cut(s) 627
SmlI CTYRAG 3 cut(s) 331, 553, 627
SmoI CTYRAG 3 cut(s) 331, 553, 627
Sse9I AATT 7 cut(s) 134, 154, 431, 460, 469, 704, 749
SsiI CCGC 6 cut(s) 440, 602, 632, 668, 716, 899
SstI GAGCTC 2 cut(s) 262, 804
StyD4I CCNGG 2 cut(s) 123, 874
TaaI ACNGT 4 cut(s) 116, 352, 664, 934
TaiI ACGT 1 cut(s) 522
TaqI TCGA 2 cut(s) 276, 628
TasI AATT 7 cut(s) 134, 154, 431, 460, 469, 704, 749
TauI GCSGC 3 cut(s) 442, 635, 671
TfiI GAWTC 2 cut(s) 587, 835
TseFI GTSAC 2 cut(s) 82, 658
Tsp45I GTSAC 2 cut(s) 82, 658
TspDTI ATGAA 2 cut(s) 742, 879
TspGWI ACGGA 3 cut(s) 134, 692, 856
VpaK11BI GGWCC 2 cut(s) 121, 493
XapI RAATTY 3 cut(s) 154, 431, 749
XhoI CTCGAG 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.