Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Forward (+)

74502 .. 75775

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcacattttgctcataccagcaccaccgctattcttgctttcctcatccttcttcactcttctgagtccattttgagtgatgagtatggccttgagtcctcacctgtaccagattcagatgttgatctcttggagtttcctctgaaccttgagtacttggaagctgagttcttcctgtatggctctttgggttttggcttggacaaagttgctccaaacttgacattgggaggtcctaaaccccttggtgctaagaaagccaaactggaccctttcactagggatgtgatagaacagtttgcatggcaagaagttggacacttgagagctattaaaaagacagtgaaagggttcccaaggccacagttggatttaagtgcaaaatcatttgcaaaagtgtttaatcttgcatttgggcgtgttttgaagccaccatttgatccttatgccaatagcttgaactatctccttgcatcctatttgatcccttatgttgggcttaccggttatgttggagcaaacccaaaactccaaggctctacttccaaaaggcttgttgcgggtcttttgggtgtggaatcaggacaagatgcagtgattcgaacattgctgtataagcatgctctggtgaaagtgcatccatatgatataacagtggccgagttcacaaatcggctttctgatctgaggaacaagctgggacaaacaggtttgaaagatgaaggccttttggttccaaaatataaaggagctgagggaaaaatcagaggcaatgttcttgccggagacgaatattcagttgcatatgacaggacaccggaggagatactgaagattgtctatggatcaggtgatgaacgtgtccctgggggtttctatccgaaaggagctgatggtcgtattgccaaatctcatctacaaaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

310

Amino Acids

33.9

Weight (kDa)

7.07

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	30, 563
AclWI	GGATC	3 cut(s)	437, 481, 856
AcoI	YGGCCR	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	111, 158
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	862
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	430, 463, 718
AjnI	CCWGG	1 cut(s)	868
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	6 cut(s)	167, 332, 459, 700, 755, 893
AluI	AGCT	6 cut(s)	167, 332, 459, 700, 755, 893
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	3 cut(s)	437, 481, 856
AoxI	GGCC	4 cut(s)	91, 362, 660, 727
AsiGI	ACCGGT	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	236, 271
AsuHPI	GGTGA	3 cut(s)	96, 643, 866
AsuII	TTCGAA	1 cut(s)	604
AvaII	GGWCC	2 cut(s)	236, 271
BbvCI	CCTCAGC	1 cut(s)	756
BccI	CCATC	1 cut(s)	890
BciT130I	CCWGG	1 cut(s)	870
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	1 cut(s)	282
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	870
Bme18I	GGWCC	2 cut(s)	236, 271
BmgT120I	GGNCC	2 cut(s)	236, 271
BmiI	GGNNCC	3 cut(s)	273, 356, 738
BmrFI	CCNGG	1 cut(s)	870
BmsI	GCATC	3 cut(s)	485, 583, 649
Bpu10I	CCTNAGC	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	3 cut(s)	116, 173, 346
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	247, 359, 535, 868, 869
BsaWI	WCCGGW	2 cut(s)	506, 820
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	2 cut(s)	608, 781
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	5 cut(s)	247, 359, 535, 868, 869
BseGI	GGATG	4 cut(s)	48, 292, 476, 640
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	608, 781
BseMII	CTCAG	4 cut(s)	57, 159, 680, 747
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	839
BseYI	CCCAGC	1 cut(s)	700
BshFI	GGCC	4 cut(s)	93, 364, 662, 729
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	3 cut(s)	507, 786, 821
BslFI	GGGAC	2 cut(s)	717, 851
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	783
BsmBI	CGTCTC	1 cut(s)	783
BsmFI	GGGAC	2 cut(s)	717, 851
BsnI	GGCC	4 cut(s)	93, 364, 662, 729
Bsp119I	TTCGAA	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	127, 442, 486, 685, 848
BspACI	CCGC	2 cut(s)	30, 563
BspANI	GGCC	4 cut(s)	93, 364, 662, 729
BspCNI	CTCAG	4 cut(s)	58, 160, 681, 748
BspLI	GGNNCC	3 cut(s)	273, 356, 738
BspPI	GGATC	3 cut(s)	437, 481, 856
BspT104I	TTCGAA	1 cut(s)	604
BsrDI	GCAATG	2 cut(s)	608, 781
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	5 cut(s)	247, 359, 535, 868, 869
BssMI	GATC	5 cut(s)	127, 442, 486, 685, 848
BssT1I	CCWWGG	3 cut(s)	247, 359, 535
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	4 cut(s)	300, 346, 369, 658
Bst6I	CTCTTC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	5 cut(s)	66, 168, 255, 689, 756
BstF5I	GGATG	4 cut(s)	48, 292, 476, 640
BstKTI	GATC	5 cut(s)	130, 445, 489, 688, 851
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	5 cut(s)	127, 442, 486, 685, 848
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 38, 260, 619
BstNI	CCWGG	1 cut(s)	870
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	93, 364, 662, 729
BtsCI	GGATG	4 cut(s)	48, 292, 476, 640
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	351, 603, 663
Cac8I	GCNNGC	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	236, 271
Csp6I	GTAC	2 cut(s)	110, 157
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	2 cut(s)	306, 623
CviQI	GTAC	2 cut(s)	110, 157
DdeI	CTNAG	5 cut(s)	66, 168, 255, 689, 756
DpnI	GATC	5 cut(s)	129, 444, 488, 687, 850
DpnII	GATC	5 cut(s)	127, 442, 486, 685, 848
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	247, 359, 535
Eco147I	AGGCCT	1 cut(s)	729
Eco47I	GGWCC	2 cut(s)	236, 271
Eco57I	CTGAAG	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	868
EcoT14I	CCWWGG	3 cut(s)	247, 359, 535
ErhI	CCWWGG	3 cut(s)	247, 359, 535
Esp3I	CGTCTC	1 cut(s)	783
FaeI	CATG	2 cut(s)	309, 626
FaqI	GGGAC	2 cut(s)	717, 851
FatI	CATG	2 cut(s)	305, 622
FauI	CCCGC	1 cut(s)	556
FauNDI	CATATG	2 cut(s)	646, 808
FokI	GGATG	4 cut(s)	35, 299, 463, 627
FspBI	CTAG	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	93, 364, 662, 729
HapII	CCGG	3 cut(s)	507, 786, 821
Hin1II	CATG	2 cut(s)	309, 626
HinfI	GANTC	5 cut(s)	68, 98, 116, 581, 601
HpaII	CCGG	3 cut(s)	507, 786, 821
HphI	GGTGA	3 cut(s)	96, 643, 866
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	7 cut(s)	67, 121, 147, 685, 690, 770, 885
Hpy188III	TCNNGA	1 cut(s)	585
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	2 cut(s)	62, 719
HpyCH4III	ACNGT	4 cut(s)	300, 346, 369, 658
HpyCH4IV	ACGT	1 cut(s)	862
HpyCH4V	TGCA	8 cut(s)	305, 383, 395, 413, 476, 596, 640, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 38, 260, 619
HpyF3I	CTNAG	5 cut(s)	66, 168, 255, 689, 756
HpySE526I	ACGT	1 cut(s)	862
Hsp92II	CATG	2 cut(s)	309, 626
Kzo9I	GATC	5 cut(s)	127, 442, 486, 685, 848
LmnI	GCTCC	4 cut(s)	220, 518, 752, 890
LweI	GCATC	3 cut(s)	485, 583, 649
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	862
MalI	GATC	5 cut(s)	129, 444, 488, 687, 850
MboI	GATC	5 cut(s)	127, 442, 486, 685, 848
MboII	GAAGA	4 cut(s)	47, 54, 166, 847
MlyI	GAGTC	2 cut(s)	77, 107
MmeI	TCCRAC	3 cut(s)	298, 351, 496
MnlI	CCTC	8 cut(s)	56, 112, 153, 227, 684, 751, 764, 817
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	336, 377, 405
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	3 cut(s)	507, 786, 821
MspR9I	CCNGG	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	870
MwoI	GCNNNNNNNGC	4 cut(s)	11, 38, 260, 619
NdeI	CATATG	2 cut(s)	646, 808
NdeII	GATC	5 cut(s)	127, 442, 486, 685, 848
NlaIII	CATG	2 cut(s)	309, 626
NlaIV	GGNNCC	3 cut(s)	273, 356, 738
NmeAIII	GCCGAG	1 cut(s)	688
NspI	RCATGY	1 cut(s)	626
NspV	TTCGAA	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	626
PasI	CCCWGGG	1 cut(s)	869
PceI	AGGCCT	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	116, 581, 601
PinAI	ACCGGT	1 cut(s)	506
PleI	GAGTC	2 cut(s)	76, 106
PpsI	GAGTC	2 cut(s)	76, 106
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	868
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	3 cut(s)	273, 356, 738
PspPI	GGNCC	2 cut(s)	236, 271
PspPPI	RGGWCCY	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
RsaI	GTAC	2 cut(s)	111, 158
RsaNI	GTAC	2 cut(s)	110, 157
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	336, 377, 405
Sau3AI	GATC	5 cut(s)	127, 442, 486, 685, 848
Sau96I	GGNCC	2 cut(s)	236, 271
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	77, 107
ScrFI	CCNGG	1 cut(s)	870
SfaNI	GCATC	3 cut(s)	485, 583, 649
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	2 cut(s)	236, 271
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	3 cut(s)	95, 152, 325
SmoI	CTYRAG	3 cut(s)	95, 152, 325
SphI	GCATGC	1 cut(s)	626
SseBI	AGGCCT	1 cut(s)	729
SsiI	CCGC	2 cut(s)	30, 563
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	729
StyD4I	CCNGG	1 cut(s)	868
StyI	CCWWGG	3 cut(s)	247, 359, 535
TaaI	ACNGT	4 cut(s)	300, 346, 369, 658
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	1 cut(s)	604
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	116, 581, 601
Tru1I	TTAA	3 cut(s)	336, 377, 405
Tru9I	TTAA	3 cut(s)	336, 377, 405
TscAI	CASTG	3 cut(s)	351, 603, 663
TspDTI	ATGAA	2 cut(s)	738, 873
TspRI	CASTG	3 cut(s)	351, 603, 663
VpaK11BI	GGWCC	2 cut(s)	236, 271
XceI	RCATGY	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.