Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Reverse (-)

54123710 .. 54124162

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTCTTATGTTACTTCTCTCATGTGTTGTACTTGATCTTTCAGCTTGTTGCGGGTCTTTTGGCTGTGGAATCAAGATGTGTGATTAGAACATTGCTGTATAAGAATGCTCTTGTGAGAGTGCACCCATATGGAATAACAGTGGTCGAGTTTACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGACAGACAGGTTCGAAAGATGAAGGCCCTCTGCTTCCAAAATATAAAGGAGCTGAGGGAAACATCATTGGCAATGTTCTTGCCGGAAATGCATATTCAGTAGCATATGACAGGAGTCACAGGACACCGGAGGAGATACTAAGAATTGTATATGGATCAGGTGATGAACATGTCCCTGGGGGTTTCTATCATAAAGGAGCTGATGGTCGTATTGCAAAATCTCATCTGCAAAATGGTACTGGAAGAAATAGTACTAGGCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

150

Amino Acids

16.56

Weight (kDa)

9.45

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	349
AfaI	GTAC	3 cut(s)	32, 424, 439
AflIII	ACRYGT	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	46, 184, 239, 386
AluI	AGCT	4 cut(s)	46, 184, 239, 386
Alw21I	GWGCWC	1 cut(s)	126
Alw44I	GTGCAC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	211, 443
ApaLI	GTGCAC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	363
BfaI	CTAG	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	361, 362
BsaWI	WCCGGW	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	2 cut(s)	92, 265
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	361, 362
BseMI	GCAATG	2 cut(s)	92, 265
BseMII	CTCAG	2 cut(s)	164, 231
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	213, 445
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	270, 314
BslFI	GGGAC	2 cut(s)	201, 344
BsmFI	GGGAC	2 cut(s)	201, 344
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	213, 445
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	36, 169, 341
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	213, 445
BspCNI	CTCAG	2 cut(s)	165, 232
BspPI	GGATC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	92, 265
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	361, 362
BssMI	GATC	3 cut(s)	36, 169, 341
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	200
BstDEI	CTNAG	4 cut(s)	173, 240, 326, 450
BstKTI	GATC	3 cut(s)	39, 172, 344
BstMBI	GATC	3 cut(s)	36, 169, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	359
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	213, 445
BtsIMutI	CAGTG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	31, 423, 438
CviAII	CATG	2 cut(s)	23, 356
CviJI	RGCY	8 cut(s)	46, 65, 163, 184, 213, 239, 386, 445
CviKI_1	RGCY	8 cut(s)	46, 65, 163, 184, 213, 239, 386, 445
CviQI	GTAC	3 cut(s)	31, 423, 438
DdeI	CTNAG	4 cut(s)	173, 240, 326, 450
DpnI	GATC	3 cut(s)	38, 171, 343
DpnII	GATC	3 cut(s)	36, 169, 341
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	2 cut(s)	26, 359
FaqI	GGGAC	2 cut(s)	201, 344
FatI	CATG	2 cut(s)	22, 355
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	2 cut(s)	130, 292
FspBI	CTAG	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	213, 445
HapII	CCGG	2 cut(s)	270, 314
Hin1II	CATG	2 cut(s)	26, 359
HinfI	GANTC	2 cut(s)	71, 301
HpaII	CCGG	2 cut(s)	270, 314
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	124, 153
Hpy188I	TCNGA	2 cut(s)	169, 174
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	124, 153
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	124, 278, 401, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	4 cut(s)	173, 240, 326, 450
Hsp92II	CATG	2 cut(s)	26, 359
Kzo9I	GATC	3 cut(s)	36, 169, 341
LmnI	GCTCC	2 cut(s)	236, 383
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	11, 302
MalI	GATC	3 cut(s)	38, 171, 343
MboI	GATC	3 cut(s)	36, 169, 341
MboII	GAAGA	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	4 cut(s)	168, 225, 235, 310
Mph1103I	ATGCAT	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	2 cut(s)	270, 314
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	2 cut(s)	130, 292
NdeII	GATC	3 cut(s)	36, 169, 341
NlaIII	CATG	2 cut(s)	26, 359
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	200
PasI	CCCWGGG	1 cut(s)	362
PciI	ACATGT	1 cut(s)	355
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PscI	ACATGT	1 cut(s)	355
PshAI	GACNNNNGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	212
RsaI	GTAC	3 cut(s)	32, 424, 439
RsaNI	GTAC	3 cut(s)	31, 423, 438
RseI	CAYNNNNRTG	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	36, 169, 341
Sau96I	GGNCC	1 cut(s)	212
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	6 cut(s)	48, 186, 199, 241, 349, 388
SfuI	TTCGAA	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	147, 200
TasI	AATT	1 cut(s)	330
TatI	WGTACW	2 cut(s)	30, 437
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	222, 366
TspRI	CASTG	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	1 cut(s)	441
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.