Rroxscaffold_5G00368040

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003995
Physical Location & Seq
Reverse (-)
49809923 .. 49812055
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368040.1

Sequence Viewer

Length: 594 bp
ATGGTCGCCGAGGGTTATGCTATTTTGGAGGCCTTGACTCTTGCTTCTTCTTTATCTTTATCCTCTATTTCGGTGGAGTCGGACTCTTTTCGGCTTATCTCTCTCGTGCTTTCCAACTCTTGTTTAGTTCGGATTGACGGAATGATATCTAGGTTTAACAGCAATAAACCTAAGCAAAGGATTCTGGAGTCCACCAGAGATAAAAAGATAATAATCTCAATTTTATTGATAAAAGATAAAAGTGATGAGTATGGCCTTGAGTCCTCACCTGCACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTCGCTCCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTATGAAAGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGGAAAGAGGATTGGAAAATGTTCAAGGATTACCAACTAAAAGTTATCTATAATTCTAACCTTGCTGCAGATGAAGAAAGTTCTGCAGCATGGACTTTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

197

Amino Acids

22.02

Weight (kDa)

4.78

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 94 - 164 5.3e-13 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 277
Acc36I ACCTGC 1 cut(s) 277
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 1 cut(s) 514
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 30, 253
ApeKI GCWGC 2 cut(s) 554, 575
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 398, 433
AsuHPI GGTGA 1 cut(s) 258
AvaII GGWCC 2 cut(s) 398, 433
BauI CACGAG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 541, 587
BcgI CGANNNNNNTGC 1 cut(s) 33
BfaI CTAG 2 cut(s) 150, 444
BfmI CTRYAG 2 cut(s) 555, 573
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 555, 576
BlsI GCNGC 2 cut(s) 556, 577
BmcAI AGTACT 1 cut(s) 320
Bme18I GGWCC 2 cut(s) 398, 433
BmgT120I GGNCC 2 cut(s) 398, 433
BmiI GGNNCC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 3 cut(s) 278, 335, 508
BsaBI GATNNNNATC 2 cut(s) 212, 288
BsaJI CCNNGG 2 cut(s) 9, 409
Bse1I ACTGG 1 cut(s) 435
Bse8I GATNNNNATC 2 cut(s) 212, 288
BseDI CCNNGG 2 cut(s) 9, 409
BseGI GGATG 1 cut(s) 454
BseJI GATNNNNATC 2 cut(s) 212, 288
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 541, 587
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 32, 255
BsnI GGCC 2 cut(s) 32, 255
Bsp143I GATC 1 cut(s) 289
BspANI GGCC 2 cut(s) 32, 255
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 2 cut(s) 559, 577
BspMI ACCTGC 1 cut(s) 277
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 9, 409
BssMI GATC 1 cut(s) 289
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 409
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 171, 330
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstSFI CTRYAG 2 cut(s) 555, 573
BstV1I GCAGC 2 cut(s) 541, 587
BsuRI GGCC 2 cut(s) 32, 255
BtsCI GGATG 1 cut(s) 454
BveI ACCTGC 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 398, 433
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 468, 579
CviJI RGCY 7 cut(s) 32, 94, 255, 329, 348, 363, 425
CviKI_1 RGCY 7 cut(s) 32, 94, 255, 329, 348, 363, 425
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 171, 330
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 32
Eco32I GATATC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 398, 433
EcoRV GATATC 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 471, 582
FaiI YATR 7 cut(s) 18, 252, 345, 419, 469, 540, 580
FatI CATG 2 cut(s) 467, 578
Fnu4HI GCNGC 2 cut(s) 555, 576
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 555, 576
FspBI CTAG 2 cut(s) 150, 444
GluI GCNGC 2 cut(s) 555, 576
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 32, 255
Hin1II CATG 2 cut(s) 471, 582
HinfI GANTC 7 cut(s) 37, 77, 83, 181, 188, 260, 278
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 82, 132, 283, 309
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 272, 467, 557, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 171, 330
Hsp92II CATG 2 cut(s) 471, 582
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 6 cut(s) 170, 208, 282, 288, 353, 416
Lsp1109I GCAGC 2 cut(s) 541, 587
MaeI CTAG 2 cut(s) 150, 444
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 3 cut(s) 39, 328, 575
MluCI AATT 2 cut(s) 219, 541
MlyI GAGTC 5 cut(s) 31, 77, 86, 197, 269
MmeI TCCRAC 3 cut(s) 60, 138, 460
MnlI CCTC 8 cut(s) 4, 22, 73, 274, 315, 389, 483, 490
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 471, 582
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 277
PceI AGGCCT 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 2 cut(s) 181, 278
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 556, 577
PleI GAGTC 5 cut(s) 31, 77, 85, 196, 268
PpsI GAGTC 5 cut(s) 31, 77, 85, 196, 268
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 398, 433
PsrI GAACNNNNNNTAC 2 cut(s) 302, 334
PstI CTGCAG 2 cut(s) 559, 577
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 555, 576
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 398, 433
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 5 cut(s) 31, 77, 86, 197, 269
SetI ASST 8 cut(s) 155, 172, 271, 315, 331, 400, 552, 593
SfcI CTRYAG 2 cut(s) 555, 573
SinI GGWCC 2 cut(s) 398, 433
SmlI CTYRAG 3 cut(s) 257, 314, 487
SmoI CTYRAG 3 cut(s) 257, 314, 487
Sse9I AATT 2 cut(s) 219, 541
SseBI AGGCCT 1 cut(s) 32
SspMI CTAG 2 cut(s) 150, 444
StuI AGGCCT 1 cut(s) 32
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 462
TasI AATT 2 cut(s) 219, 541
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 181, 278
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 2 cut(s) 554, 575
TspDTI ATGAA 2 cut(s) 434, 576
TspGWI ACGGA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 398, 433
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 2 cut(s) 150, 444
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.