Rroxscaffold_5G00368030

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003995
Physical Location & Seq
Reverse (-)
49807675 .. 49809521
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368030.1

Sequence Viewer

Length: 939 bp
ATGGCACATTTTGCTCATACCAGCACCACCACTACTATTGCTTTCCTCACCCTCCTCCTTCTTTACTCTTCTGAGTCCATTTTGTGTGATGAGTATGGCCATGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTCGCTCCAAACTTGACAATGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAACCTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACCTGAGAGCAATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCAATTGCAGAAGTGTTTAATCTTGCATTTGGGCGTGTATTGAAGCCGCCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGTTGTATGAGCAGGCTCAGGTGAAAGTGCATCCATATGATATATCAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGAAAAGCAGGTTTGAAAGATGAAGGCCTTTTGGTTCCAAAATATATAGGAGCTGAGGGAAAAATCAGTGGCAATGTTCTTGCCGGAGACGAATATTCAATTGCATATGACAGGACACCGGAGGAGATACTGAGGATTGTATATGGATCAGGTGATGAACATGTCCCTGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTTATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

312

Amino Acids

34.1

Weight (kDa)

5.48

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 7e-39 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 560, 707
AciI CCGC 1 cut(s) 440
AclWI GGATC 3 cut(s) 443, 487, 862
AcoI YGGCCR 2 cut(s) 97, 666
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 4 cut(s) 436, 469, 724, 807
AjnI CCWGG 2 cut(s) 273, 874
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 5 cut(s) 173, 465, 706, 761, 899
AluI AGCT 5 cut(s) 173, 465, 706, 761, 899
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 443, 487, 862
AoxI GGCC 4 cut(s) 97, 368, 666, 733
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 242, 277
AsuHPI GGTGA 4 cut(s) 40, 102, 649, 872
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 242, 277
BalI TGGCCA 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 762
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 2 cut(s) 275, 876
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 560, 707
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 275, 876
Bme18I GGWCC 2 cut(s) 242, 277
BmgT120I GGNCC 2 cut(s) 242, 277
BmiI GGNNCC 3 cut(s) 279, 362, 744
BmrFI CCNGG 2 cut(s) 275, 876
BmsI GCATC 3 cut(s) 491, 589, 655
Bpu10I CCTNAGC 2 cut(s) 633, 762
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 275, 876
BseDI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BseGI GGATG 3 cut(s) 298, 482, 646
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 7 cut(s) 63, 165, 323, 647, 686, 753, 830
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 44, 845
BseYI CCCAGC 1 cut(s) 706
BshFI GGCC 4 cut(s) 99, 370, 668, 735
BsiSI CCGG 2 cut(s) 792, 827
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 4 cut(s) 99, 370, 668, 735
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 5 cut(s) 133, 448, 492, 691, 854
BspACI CCGC 1 cut(s) 440
BspANI GGCC 4 cut(s) 99, 370, 668, 735
BspCNI CTCAG 7 cut(s) 64, 166, 324, 646, 687, 754, 831
BspLI GGNNCC 3 cut(s) 279, 362, 744
BspMI ACCTGC 2 cut(s) 560, 707
BspPI GGATC 3 cut(s) 443, 487, 862
BspT104I TTCGAA 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BssMI GATC 5 cut(s) 133, 448, 492, 691, 854
BssT1I CCWWGG 3 cut(s) 253, 365, 541
Bst2UI CCWGG 2 cut(s) 275, 876
Bst4CI ACNGT 3 cut(s) 306, 352, 375
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 8 cut(s) 72, 174, 261, 332, 633, 695, 762, 839
BstF5I GGATG 3 cut(s) 298, 482, 646
BstKTI GATC 5 cut(s) 136, 451, 495, 694, 857
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 5 cut(s) 133, 448, 492, 691, 854
BstMWI GCNNNNNNNGC 2 cut(s) 11, 266
BstNI CCWGG 2 cut(s) 275, 876
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 2 cut(s) 273, 874
BsuRI GGCC 4 cut(s) 99, 370, 668, 735
BtsCI GGATG 3 cut(s) 298, 482, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 4 cut(s) 357, 609, 669, 781
BveI ACCTGC 2 cut(s) 560, 707
Cac8I GCNNGC 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 242, 277
Csp6I GTAC 2 cut(s) 116, 163
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 3 cut(s) 101, 312, 869
CviQI GTAC 2 cut(s) 116, 163
DdeI CTNAG 8 cut(s) 72, 174, 261, 332, 633, 695, 762, 839
DpnI GATC 5 cut(s) 135, 450, 494, 693, 856
DpnII GATC 5 cut(s) 133, 448, 492, 691, 854
EaeI YGGCCR 2 cut(s) 97, 666
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 253, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 242, 277
EcoRII CCWGG 2 cut(s) 273, 874
EcoT14I CCWWGG 3 cut(s) 253, 365, 541
ErhI CCWWGG 3 cut(s) 253, 365, 541
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 3 cut(s) 104, 315, 872
FaqI GGGAC 1 cut(s) 857
FatI CATG 3 cut(s) 100, 311, 868
FauNDI CATATG 2 cut(s) 652, 814
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 3 cut(s) 305, 469, 633
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 710
HaeIII GGCC 4 cut(s) 99, 370, 668, 735
HapII CCGG 2 cut(s) 792, 827
Hin1II CATG 3 cut(s) 104, 315, 872
HinfI GANTC 5 cut(s) 74, 104, 122, 587, 607
HpaII CCGG 2 cut(s) 792, 827
HphI GGTGA 4 cut(s) 40, 102, 649, 872
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 6 cut(s) 73, 127, 153, 691, 696, 891
Hpy188III TCNNGA 1 cut(s) 591
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 68, 725
HpyCH4III ACNGT 3 cut(s) 306, 352, 375
HpyCH4V TGCA 9 cut(s) 311, 389, 401, 419, 482, 569, 602, 646, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 266
HpyF3I CTNAG 8 cut(s) 72, 174, 261, 332, 633, 695, 762, 839
Hsp92II CATG 3 cut(s) 104, 315, 872
Kzo9I GATC 5 cut(s) 133, 448, 492, 691, 854
LmnI GCTCC 4 cut(s) 226, 524, 758, 896
LweI GCATC 3 cut(s) 491, 589, 655
MaeI CTAG 1 cut(s) 288
MalI GATC 5 cut(s) 135, 450, 494, 693, 856
MboI GATC 5 cut(s) 133, 448, 492, 691, 854
MboII GAAGA 2 cut(s) 60, 172
MfeI CAATTG 2 cut(s) 396, 807
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 339, 396, 807
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 83, 113
MmeI TCCRAC 3 cut(s) 304, 357, 502
Mox20I TGGCCA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 359
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 342, 383, 411
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 792, 827
MspR9I CCNGG 2 cut(s) 275, 876
MunI CAATTG 2 cut(s) 396, 807
MvaI CCWGG 2 cut(s) 275, 876
MwoI GCNNNNNNNGC 2 cut(s) 11, 266
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 5 cut(s) 133, 448, 492, 691, 854
NlaIII CATG 3 cut(s) 104, 315, 872
NlaIV GGNNCC 3 cut(s) 279, 362, 744
NmeAIII GCCGAG 1 cut(s) 694
NspI RCATGY 1 cut(s) 872
NspV TTCGAA 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 735
PciI ACATGT 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 122, 587, 607
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 2 cut(s) 82, 112
PpsI GAGTC 2 cut(s) 82, 112
PscI ACATGT 1 cut(s) 868
Psp6I CCWGG 2 cut(s) 273, 874
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 2 cut(s) 273, 874
PspN4I GGNNCC 3 cut(s) 279, 362, 744
PspPI GGNCC 2 cut(s) 242, 277
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 342, 383, 411
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 5 cut(s) 133, 448, 492, 691, 854
Sau96I GGNCC 2 cut(s) 242, 277
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 2 cut(s) 83, 113
ScrFI CCNGG 2 cut(s) 275, 876
SfaNI GCATC 3 cut(s) 491, 589, 655
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 2 cut(s) 242, 277
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 339, 396, 807
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 1 cut(s) 440
SspI AATATT 1 cut(s) 803
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 2 cut(s) 273, 874
StyI CCWWGG 3 cut(s) 253, 365, 541
TaaI ACNGT 3 cut(s) 306, 352, 375
TaqI TCGA 1 cut(s) 610
TasI AATT 3 cut(s) 339, 396, 807
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 122, 587, 607
Tru1I TTAA 3 cut(s) 342, 383, 411
Tru9I TTAA 3 cut(s) 342, 383, 411
TscAI CASTG 4 cut(s) 357, 609, 669, 781
TspDTI ATGAA 2 cut(s) 744, 879
TspRI CASTG 4 cut(s) 357, 609, 669, 781
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 242, 277
XceI RCATGY 1 cut(s) 872
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.