MD16G1149300.v1.1

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0003995
Physical Location & Seq
Forward (+)
11755682 .. 11757576
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1149300.v1.1.491

Sequence Viewer

Length: 993 bp
ATGAACAAGTCCACCACTACTCAGACATACTCTCAAAACTGCAAGTCTGTAACCATGGCCACATTTGCTTATGCCACCACCACCGCCATTGTCTTCCTCATCCTCCTCCCGCTGTCTTGCTCTTCCGAATCATTTTTGCACCAACATCACCACGGCGGCTCCTTCTCCGTCCAGAAATCGGACGTCGATCTTTTGGAGTTTCCTTTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTTTGTATGGCTCTTTGGGGTATGGTTTGGATAAAGTTTATCCAAGCTTAGCCCAAGGAGGTCCCTCTCCCATTGGTGCCAAAAAGGCACATTTGGACGACTTCACTAGGGATGTCATCGAGCAATTTGGATGGCAAGAAGTTGGACACTTGAGAGCTATTAAGAAAACTGTGAAGGGTTTCCCAAGGCCATTGTTGAATATAAGTGCAGCATCATTTGCTCATGTGTTTGATTCTGCATTTGGGAGTCCCTTAAATCCACCATTTGACCCTTATGCCAATTCAATCAACTATCTCCTTGCATCCTATATCATTCCTTATGTTGGTCTCACTGGCTATGTTGGTGCAAGCCCTAAGCTCCAAGGTGCTACTTCCAAAAGGTTAGTTGCAGGTCTTTTGGGTGTGGAATCAGGCCAAGATGCAGTGATTCGAGCATTGCTATACCAGCGCGCAGAGTTGAAAGTGGAACCATATGGCATTACAGTGGCTGAGTTCACAAATCGCATTTCGGAACTAAGGAATAAACTAGGACACGAAGGTTTGAAAGATGAAGGCCTTGTGGTTCCCAAACACTTGGGTGCTGAGGGAAAAGTCAGCGGCAACATTCTCGCTGGAGACGAGTACTCACTTGCATATGGCAGGACTCCAGAGGAGATACTAAGGATCGTATATGGTAGCGGTAATGAACGTGTACCTGGCGGTATCTACCCCAAAGGAGCTGACGGCCGGATTGCTAAATCTTATTTGAAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

331

Amino Acids

35.87

Weight (kDa)

7.13

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 60 - 227 2.2e-36 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 684
AciI CCGC 6 cut(s) 84, 110, 156, 831, 912, 933
AclWI GGATC 1 cut(s) 905
AcoI YGGCCR 2 cut(s) 57, 958
AcsI RAATTY 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 857, 927
AfiI CCNNNNNNNGG 2 cut(s) 178, 557
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 6 cut(s) 208, 433, 519, 694, 778, 982
AjnI CCWGG 1 cut(s) 928
AleI CACNNNNGTG 1 cut(s) 810
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 5 cut(s) 227, 282, 392, 592, 953
AluI AGCT 5 cut(s) 227, 282, 392, 592, 953
Alw26I GTCTC 2 cut(s) 566, 843
AlwI GGATC 1 cut(s) 905
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 5 cut(s) 57, 422, 646, 787, 958
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 2 cut(s) 684, 686
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 296
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 360
BceAI ACGGC 2 cut(s) 169, 973
BcgI CGANNNNNNTGC 2 cut(s) 823, 857
BciT130I CCWGG 1 cut(s) 930
BcoDI GTCTC 2 cut(s) 566, 843
BfaI CTAG 2 cut(s) 342, 761
BfuAI ACCTGC 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 3 cut(s) 157, 444, 832
BlpI GCTNAGC 1 cut(s) 283
BlsI GCNGC 3 cut(s) 158, 445, 833
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 1 cut(s) 930
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 5 cut(s) 160, 298, 313, 702, 798
BmrFI CCNGG 1 cut(s) 930
BmsI GCATC 3 cut(s) 455, 545, 643
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 864, 867
Bpu10I CCTNAGC 2 cut(s) 588, 816
Bpu1102I GCTNAGC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 5 cut(s) 54, 151, 289, 419, 595
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 557
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 1 cut(s) 930
BseDI CCNNGG 5 cut(s) 54, 151, 289, 419, 595
BseGI GGATG 4 cut(s) 99, 352, 371, 536
BseLI CCNNNNNNNGG 2 cut(s) 178, 557
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 4 cut(s) 35, 219, 714, 807
BseNI ACTGG 1 cut(s) 571
BsePI GCGCGC 1 cut(s) 682
BseRI GAGGAG 2 cut(s) 95, 899
BseX3I CGGCCG 1 cut(s) 958
BseXI GCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 684
Bsh1285I CGRYCG 1 cut(s) 961
BshFI GGCC 5 cut(s) 59, 424, 648, 789, 960
BshNI GGYRCC 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 961
BsiSI CCGG 1 cut(s) 961
BslFI GGGAC 2 cut(s) 282, 468
BslI CCNNNNNNNGG 2 cut(s) 178, 557
BsmAI GTCTC 2 cut(s) 566, 843
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 2 cut(s) 282, 468
BsnI GGCC 5 cut(s) 59, 424, 648, 789, 960
Bso31I GGTCTC 1 cut(s) 566
Bsp143I GATC 2 cut(s) 187, 897
Bsp1720I GCTNAGC 1 cut(s) 283
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 6 cut(s) 84, 110, 156, 831, 912, 933
BspANI GGCC 5 cut(s) 59, 424, 648, 789, 960
BspCNI CTCAG 4 cut(s) 34, 220, 715, 808
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 5 cut(s) 160, 298, 313, 702, 798
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 668
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 5 cut(s) 54, 151, 289, 419, 595
BssHII GCGCGC 1 cut(s) 682
BssMI GATC 2 cut(s) 187, 897
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 4 cut(s) 54, 289, 419, 595
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 2 cut(s) 406, 718
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 583, 684
BstDEI CTNAG 8 cut(s) 21, 228, 283, 588, 723, 749, 816, 893
BstDSI CCRYGG 2 cut(s) 54, 151
BstF5I GGATG 4 cut(s) 99, 352, 371, 536
BstFNI CGCG 1 cut(s) 684
BstHHI GCGC 2 cut(s) 684, 686
BstKTI GATC 2 cut(s) 190, 900
BstMAI GTCTC 2 cut(s) 566, 843
BstMBI GATC 2 cut(s) 187, 897
BstMCI CGRYCG 1 cut(s) 961
BstMWI GCNNNNNNNGC 4 cut(s) 65, 320, 452, 679
BstNI CCWGG 1 cut(s) 930
BstSCI CCNGG 1 cut(s) 928
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 808
BstZI CGGCCG 1 cut(s) 958
BsuRI GGCC 5 cut(s) 59, 424, 648, 789, 960
BtgI CCRYGG 2 cut(s) 54, 151
BtsCI GGATG 4 cut(s) 99, 352, 371, 536
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 3 cut(s) 564, 663, 723
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 2 cut(s) 583, 684
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 2 cut(s) 684, 686
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 856, 926
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 2 cut(s) 55, 458
CviQI GTAC 2 cut(s) 856, 926
DdeI CTNAG 8 cut(s) 21, 228, 283, 588, 723, 749, 816, 893
DpnI GATC 2 cut(s) 189, 899
DpnII GATC 2 cut(s) 187, 897
EaeI YGGCCR 2 cut(s) 57, 958
EagI CGGCCG 1 cut(s) 958
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 958
Eco130I CCWWGG 4 cut(s) 54, 289, 419, 595
Eco147I AGGCCT 1 cut(s) 789
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 296
Eco52I CGGCCG 1 cut(s) 958
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 928
EcoT14I CCWWGG 4 cut(s) 54, 289, 419, 595
ErhI CCWWGG 4 cut(s) 54, 289, 419, 595
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 2 cut(s) 58, 461
FaqI GGGAC 2 cut(s) 282, 468
FatI CATG 2 cut(s) 54, 457
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 2 cut(s) 706, 868
Fnu4HI GCNGC 3 cut(s) 157, 444, 832
FokI GGATG 4 cut(s) 86, 359, 378, 523
Fsp4HI GCNGC 3 cut(s) 157, 444, 832
FspBI CTAG 2 cut(s) 342, 761
GlaI GCGC 2 cut(s) 683, 685
GluI GCNGC 3 cut(s) 157, 444, 832
GsuI CTGGAG 2 cut(s) 864, 867
HaeIII GGCC 5 cut(s) 59, 424, 648, 789, 960
HapII CCGG 1 cut(s) 961
HhaI GCGC 2 cut(s) 684, 686
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 58, 461
Hin6I GCGC 2 cut(s) 682, 684
HinP1I GCGC 2 cut(s) 682, 684
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 6 cut(s) 128, 467, 481, 641, 661, 877
HpaII CCGG 1 cut(s) 961
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 12, 729, 926
Hpy188I TCNGA 4 cut(s) 24, 127, 181, 745
Hpy188III TCNNGA 2 cut(s) 172, 881
Hpy8I GTNNAC 3 cut(s) 12, 729, 926
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 172, 403, 764, 779
HpyCH4III ACNGT 2 cut(s) 406, 718
HpyCH4IV ACGT 2 cut(s) 183, 922
HpyCH4V TGCA 9 cut(s) 42, 139, 443, 473, 536, 581, 623, 656, 866
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 320, 452, 679
HpyF3I CTNAG 8 cut(s) 21, 228, 283, 588, 723, 749, 816, 893
HpySE526I ACGT 2 cut(s) 183, 922
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 58, 461
HspAI GCGC 2 cut(s) 682, 684
Kzo9I GATC 2 cut(s) 187, 897
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 164, 597, 950
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 3 cut(s) 455, 545, 643
MaeI CTAG 2 cut(s) 342, 761
MaeII ACGT 2 cut(s) 183, 922
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 189, 899
MboI GATC 2 cut(s) 187, 897
MboII GAAGA 2 cut(s) 85, 114
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 208, 359, 514
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 490, 871
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 7 cut(s) 107, 113, 116, 287, 310, 811, 877
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 396, 488
MslI CAYNNNNRTG 2 cut(s) 716, 810
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 112, 831
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 1 cut(s) 930
MvaI CCWGG 1 cut(s) 930
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 4 cut(s) 65, 320, 452, 679
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 2 cut(s) 706, 868
NdeII GATC 2 cut(s) 187, 897
NlaIII CATG 2 cut(s) 58, 461
NlaIV GGNNCC 5 cut(s) 160, 298, 313, 702, 798
OliI CACNNNNGTG 1 cut(s) 810
PauI GCGCGC 1 cut(s) 682
PceI AGGCCT 1 cut(s) 789
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 4 cut(s) 128, 467, 641, 661
PkrI GCNGC 3 cut(s) 158, 445, 833
PleI GAGTC 2 cut(s) 489, 871
PpsI GAGTC 2 cut(s) 489, 871
PpuMI RGGWCCY 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 928
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 5 cut(s) 160, 298, 313, 702, 798
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 722
PteI GCGCGC 1 cut(s) 682
RsaI GTAC 2 cut(s) 857, 927
RsaNI GTAC 2 cut(s) 856, 926
RseI CAYNNNNRTG 2 cut(s) 716, 810
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 396, 488
SatI GCNGC 3 cut(s) 157, 444, 832
Sau3AI GATC 2 cut(s) 187, 897
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 2 cut(s) 490, 871
ScrFI CCNGG 1 cut(s) 930
SfaNI GCATC 3 cut(s) 455, 545, 643
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 716, 810
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 3 cut(s) 208, 359, 514
SseBI AGGCCT 1 cut(s) 789
SsiI CCGC 6 cut(s) 84, 110, 156, 831, 912, 933
SspMI CTAG 2 cut(s) 342, 761
StuI AGGCCT 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 928
StyI CCWWGG 4 cut(s) 54, 289, 419, 595
TaaI ACNGT 2 cut(s) 406, 718
TaiI ACGT 2 cut(s) 186, 925
TaqI TCGA 3 cut(s) 186, 354, 664
TasI AATT 3 cut(s) 208, 359, 514
TatI WGTACW 1 cut(s) 855
TauI GCSGC 2 cut(s) 159, 834
TfiI GAWTC 4 cut(s) 128, 467, 641, 661
Tru1I TTAA 2 cut(s) 396, 488
Tru9I TTAA 2 cut(s) 396, 488
TscAI CASTG 3 cut(s) 571, 663, 723
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 17, 798, 933
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 3 cut(s) 571, 663, 723
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 2 cut(s) 342, 761
ZraI GACGTC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.