RLG00000007322

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003995
Physical Location & Seq
Forward (+)
15802453 .. 15803862
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007322

Sequence Viewer

Length: 915 bp
ATGGCACATTTTGCTCATACCAGCACCATCGCTACTCTTGCTTTCCTCATCCTCCTCCTTCCTTACTCTTCTGGCCTTGACTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTCCAAACTTGACATCGGGAGGTCCAACACCCATTGGTGCTAAGAAGGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGACTTAAGTGCAAAATCATTTGCAGAAGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCGCCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGTTGTATGAGCAGGCTCAGCTGAAAGTGTTTCCATATGATATAACAGTGGCCGAGTTCACAAATCGACTTTCTGATCTGAGGAACAAGCTGGGAAAAGCAGGTTTGAAAGATGAAGGCCTTGTGGTTCCAAAATATGAAGGAGCTGAGGGAAAAATCAGTGGCAATGTTCTTGCCGGAGACGAATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTGAGGATTGTATATGGATCAGGTGATGAACATGTCCCTGGGGGCTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTTATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

305

Amino Acids

33.09

Weight (kDa)

5.53

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 34 - 201 1.1e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 536, 683
AciI CCGC 1 cut(s) 416
AclWI GGATC 3 cut(s) 419, 463, 838
AcoI YGGCCR 1 cut(s) 642
AfaI GTAC 2 cut(s) 93, 140
AfiI CCNNNNNNNGG 1 cut(s) 479
AflII CTTAAG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 844
AgsI TTSAA 3 cut(s) 412, 445, 700
AjnI CCWGG 1 cut(s) 850
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 7 cut(s) 149, 314, 441, 613, 682, 737, 875
AluI AGCT 7 cut(s) 149, 314, 441, 613, 682, 737, 875
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 3 cut(s) 419, 463, 838
AoxI GGCC 5 cut(s) 73, 243, 344, 642, 709
Asp700I GAANNNNTTC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 218, 253
AsuHPI GGTGA 2 cut(s) 78, 848
AsuII TTCGAA 1 cut(s) 586
AvaII GGWCC 2 cut(s) 218, 253
BbvCI CCTCAGC 1 cut(s) 738
BccI CCATC 2 cut(s) 35, 872
BciT130I CCWGG 1 cut(s) 852
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 358
BfuAI ACCTGC 2 cut(s) 536, 683
BisI GCNGC 1 cut(s) 416
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 2 cut(s) 218, 253
BmgT120I GGNCC 2 cut(s) 218, 253
BmiI GGNNCC 3 cut(s) 255, 338, 720
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 2 cut(s) 467, 565
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 586
BpuEI CTTGAG 2 cut(s) 155, 328
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 341, 517, 850, 851
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 255, 493
Bse3DI GCAATG 1 cut(s) 763
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 4 cut(s) 341, 517, 850, 851
BseGI GGATG 3 cut(s) 48, 274, 458
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 5 cut(s) 141, 623, 662, 729, 806
BseNI ACTGG 2 cut(s) 255, 493
BseRI GAGGAG 3 cut(s) 44, 73, 821
BseYI CCCAGC 1 cut(s) 682
BshFI GGCC 5 cut(s) 75, 245, 346, 644, 711
BsiSI CCGG 2 cut(s) 768, 803
BslFI GGGAC 1 cut(s) 833
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 833
BsnI GGCC 5 cut(s) 75, 245, 346, 644, 711
Bsp119I TTCGAA 1 cut(s) 586
Bsp143I GATC 5 cut(s) 109, 424, 468, 667, 830
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 1 cut(s) 416
BspANI GGCC 5 cut(s) 75, 245, 346, 644, 711
BspCNI CTCAG 5 cut(s) 142, 622, 663, 730, 807
BspLI GGNNCC 3 cut(s) 255, 338, 720
BspMI ACCTGC 2 cut(s) 536, 683
BspPI GGATC 3 cut(s) 419, 463, 838
BspT104I TTCGAA 1 cut(s) 586
BspTI CTTAAG 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 763
BsrI ACTGG 2 cut(s) 255, 493
BssECI CCNNGG 4 cut(s) 341, 517, 850, 851
BssMI GATC 5 cut(s) 109, 424, 468, 667, 830
BssT1I CCWWGG 2 cut(s) 341, 517
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 4 cut(s) 282, 328, 351, 640
Bst6I CTCTTC 1 cut(s) 73
BstAFI CTTAAG 1 cut(s) 358
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 6 cut(s) 150, 237, 609, 671, 738, 815
BstF5I GGATG 3 cut(s) 48, 274, 458
BstKTI GATC 5 cut(s) 112, 427, 471, 670, 833
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 5 cut(s) 109, 424, 468, 667, 830
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 242, 610
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 1 cut(s) 850
BsuRI GGCC 5 cut(s) 75, 245, 346, 644, 711
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 48, 274, 458
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 4 cut(s) 333, 585, 645, 757
BveI ACCTGC 2 cut(s) 536, 683
Cac8I GCNNGC 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 218, 253
Csp6I GTAC 2 cut(s) 92, 139
CviAII CATG 2 cut(s) 288, 845
CviQI GTAC 2 cut(s) 92, 139
DdeI CTNAG 6 cut(s) 150, 237, 609, 671, 738, 815
DpnI GATC 5 cut(s) 111, 426, 470, 669, 832
DpnII GATC 5 cut(s) 109, 424, 468, 667, 830
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 341, 517
Eco147I AGGCCT 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 218, 253
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 2 cut(s) 341, 517
ErhI CCWWGG 2 cut(s) 341, 517
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 2 cut(s) 291, 848
FaqI GGGAC 1 cut(s) 833
FatI CATG 2 cut(s) 287, 844
FauNDI CATATG 2 cut(s) 628, 790
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 3 cut(s) 35, 281, 445
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 1 cut(s) 264
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 686
HaeIII GGCC 5 cut(s) 75, 245, 346, 644, 711
HapII CCGG 2 cut(s) 768, 803
Hin1II CATG 2 cut(s) 291, 848
HinfI GANTC 4 cut(s) 80, 98, 563, 583
HpaII CCGG 2 cut(s) 768, 803
HphI GGTGA 2 cut(s) 78, 848
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 5 cut(s) 103, 129, 667, 672, 867
Hpy188III TCNNGA 2 cut(s) 213, 567
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 4 cut(s) 68, 235, 701, 725
HpyCH4III ACNGT 4 cut(s) 282, 328, 351, 640
HpyCH4V TGCA 8 cut(s) 287, 365, 377, 395, 458, 545, 578, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 242, 610
HpyF3I CTNAG 6 cut(s) 150, 237, 609, 671, 738, 815
Hsp92II CATG 2 cut(s) 291, 848
Kzo9I GATC 5 cut(s) 109, 424, 468, 667, 830
LmnI GCTCC 4 cut(s) 202, 500, 734, 872
LweI GCATC 2 cut(s) 467, 565
MaeI CTAG 1 cut(s) 264
MalI GATC 5 cut(s) 111, 426, 470, 669, 832
MboI GATC 5 cut(s) 109, 424, 468, 667, 830
MboII GAAGA 2 cut(s) 60, 148
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 4 cut(s) 245, 280, 333, 478
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 3 cut(s) 318, 359, 387
MspA1I CMGCKG 1 cut(s) 613
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 2 cut(s) 768, 803
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 242, 610
NdeI CATATG 2 cut(s) 628, 790
NdeII GATC 5 cut(s) 109, 424, 468, 667, 830
NlaIII CATG 2 cut(s) 291, 848
NlaIV GGNNCC 3 cut(s) 255, 338, 720
NmeAIII GCCGAG 1 cut(s) 670
NspI RCATGY 1 cut(s) 848
NspV TTCGAA 1 cut(s) 586
PasI CCCWGGG 1 cut(s) 851
PceI AGGCCT 1 cut(s) 711
PciI ACATGT 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 3 cut(s) 98, 563, 583
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PscI ACATGT 1 cut(s) 844
Psp6I CCWGG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 255, 338, 720
PspPI GGNCC 2 cut(s) 218, 253
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 2 cut(s) 93, 140
RsaNI GTAC 2 cut(s) 92, 139
SaqAI TTAA 3 cut(s) 318, 359, 387
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 5 cut(s) 109, 424, 468, 667, 830
Sau96I GGNCC 2 cut(s) 218, 253
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 852
SfaNI GCATC 2 cut(s) 467, 565
SfuI TTCGAA 1 cut(s) 586
SinI GGWCC 2 cut(s) 218, 253
SmlI CTYRAG 3 cut(s) 134, 307, 358
SmoI CTYRAG 3 cut(s) 134, 307, 358
SseBI AGGCCT 1 cut(s) 711
SsiI CCGC 1 cut(s) 416
SspI AATATT 1 cut(s) 779
SspMI CTAG 1 cut(s) 264
StuI AGGCCT 1 cut(s) 711
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 2 cut(s) 341, 517
TaaI ACNGT 4 cut(s) 282, 328, 351, 640
TaqI TCGA 2 cut(s) 586, 658
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 3 cut(s) 98, 563, 583
Tru1I TTAA 3 cut(s) 318, 359, 387
Tru9I TTAA 3 cut(s) 318, 359, 387
TscAI CASTG 4 cut(s) 333, 585, 645, 757
TspDTI ATGAA 3 cut(s) 720, 744, 855
TspRI CASTG 4 cut(s) 333, 585, 645, 757
Vha464I CTTAAG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 218, 253
XceI RCATGY 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.