Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Forward (+)

9008894 .. 9010384

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCACAATTTGCTTATGTCACCACCGCCATTGTTGCCTTCTTCCTCATCCTCCTTCCACCATCTTATTTTTCTGAATCTACTTTAAGCCATCACCCTCGCTCCTACTCACCTACACAATCAGATGTTGATCTTTTAGAATTTCCTCTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTCTGTATGGCTCTTTGGGCTATGGCTTGGATAAAGTTAATCCAGGCTTAACCCAGGGAGGTCCATCTCCCATTGGTGCTCAAAAAGCCCATTTGGACCACTTCACTAGGGATGTTATCACGCAATTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAGTAAAGTAAAGGGATTCCCAAGGCCATTGTTGAATTTGAGTGCAGAATCATTTGCCAAGGTGTTTGATTCTGCATTTGGTCATCCCTTGGTTCCCCCTTTTGACCCCTATGCCAATTCAATCAACTATCTCCTTGCATCCTATGTGATTCCTTATGTTGGTCTCACTGGGTATGTTGGAACCGCCCCAAAGCTCCAAGGTCGTGTTTCCAAATCGCTTGTTGCAGGGCTTTTGGCAGTGGAATCAGGTCAAGATGCAGTGATTCGAGCATTGCTATATGAGCGTGCCCTGGAGAAGGTGCAACCATATGGTATAACAGTGGCTGAGTTCACTAATCGCATTTCAAATCTAAGGAATAAGCTAGGACATGGAGGTTGGAAAGATGAAGGCCTTGTGGTTCCCAAATACAGAGGTGCTGAGGGAAAAATCACTGGCAACGTTCTCGCCGGGGACGAGTTCTCACTCGGATATGACAGGACACCACAGGAGATACTAAGAATTATATATGCGAGTGGTAATGAACATGTCCCTGGAGGTTTCTATCCTAAAGGAGCTGATGGCCATATTGCTAAATCTTATTTACATAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

312

Amino Acids

34.02

Weight (kDa)

6.8

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 525
AclI	AACGTT	1 cut(s)	780
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	3 cut(s)	140, 151, 376
AfiI	CCNNNNNNNGG	2 cut(s)	500, 637
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	3 cut(s)	376, 462, 687
AjnI	CCWGG	4 cut(s)	220, 231, 630, 871
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	5 cut(s)	170, 335, 535, 703, 896
AluI	AGCT	5 cut(s)	170, 335, 535, 703, 896
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	509
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	3 cut(s)	365, 730, 901
ApoI	RAATTY	3 cut(s)	140, 151, 376
AspS9I	GGNCC	2 cut(s)	239, 274
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	3 cut(s)	13, 86, 102
AvaII	GGWCC	2 cut(s)	239, 274
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	759
BccI	CCATC	4 cut(s)	70, 99, 250, 893
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BciT130I	CCWGG	4 cut(s)	222, 233, 632, 873
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	285, 704
Bme1390I	CCNGG	5 cut(s)	222, 233, 632, 790, 873
Bme18I	GGWCC	2 cut(s)	239, 274
BmgT120I	GGNCC	2 cut(s)	239, 274
BmiI	GGNNCC	3 cut(s)	435, 523, 741
BmrFI	CCNGG	5 cut(s)	222, 233, 632, 790, 873
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	488, 586
BmuI	ACTGGG	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	653, 894
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	9 cut(s)	231, 232, 362, 399, 429, 538, 630, 789, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 637
Bse1I	ACTGG	2 cut(s)	514, 778
Bse3DI	GCAATG	1 cut(s)	611
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	4 cut(s)	222, 233, 632, 873
BseDI	CCNNGG	9 cut(s)	231, 232, 362, 399, 429, 538, 630, 789, 871
BseGI	GGATG	4 cut(s)	48, 295, 424, 479
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	500, 637
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	162, 657, 750
BseNI	ACTGG	2 cut(s)	514, 778
BseSI	GKGCMC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	367, 732, 903
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	806, 854
BslI	CCNNNNNNNGG	2 cut(s)	500, 637
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	806, 854
BsnI	GGCC	3 cut(s)	367, 732, 903
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	259, 631
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	27, 525
BspANI	GGCC	3 cut(s)	367, 732, 903
BspCNI	CTCAG	3 cut(s)	163, 658, 751
BspLI	GGNNCC	3 cut(s)	435, 523, 741
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	514, 778
BssECI	CCNNGG	9 cut(s)	231, 232, 362, 399, 429, 538, 630, 789, 871
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	4 cut(s)	362, 399, 429, 538
Bst2UI	CCWGG	4 cut(s)	222, 233, 632, 873
Bst4CI	ACNGT	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	5 cut(s)	171, 666, 692, 759, 836
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	4 cut(s)	48, 295, 424, 479
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 35, 195, 263, 622
BstNI	CCWGG	4 cut(s)	222, 233, 632, 873
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	5 cut(s)	220, 231, 630, 788, 871
BstSLI	GKGCMC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	367, 732, 903
BtsCI	GGATG	4 cut(s)	48, 295, 424, 479
BtsI	GCAGTG	2 cut(s)	585, 606
BtsIMutI	CAGTG	5 cut(s)	507, 585, 606, 666, 771
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr13I	GGNCC	2 cut(s)	239, 274
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	309, 710, 866
DdeI	CTNAG	5 cut(s)	171, 666, 692, 759, 836
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	901
Eco130I	CCWWGG	4 cut(s)	362, 399, 429, 538
Eco147I	AGGCCT	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	239, 274
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoRII	CCWGG	4 cut(s)	220, 231, 630, 871
EcoT14I	CCWWGG	4 cut(s)	362, 399, 429, 538
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	4 cut(s)	362, 399, 429, 538
FaeI	CATG	3 cut(s)	312, 713, 869
FaqI	GGGAC	2 cut(s)	806, 854
FatI	CATG	3 cut(s)	308, 709, 865
FauNDI	CATATG	1 cut(s)	649
FokI	GGATG	4 cut(s)	35, 302, 411, 466
FspBI	CTAG	2 cut(s)	285, 704
GsuI	CTGGAG	2 cut(s)	653, 894
HaeIII	GGCC	3 cut(s)	367, 732, 903
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	3 cut(s)	312, 713, 869
HinfI	GANTC	7 cut(s)	77, 357, 389, 410, 490, 584, 604
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	3 cut(s)	13, 86, 102
Hpy166II	GTNNAC	1 cut(s)	672
Hpy188I	TCNGA	4 cut(s)	76, 124, 150, 809
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	1 cut(s)	672
HpyAV	CCTTC	4 cut(s)	49, 65, 631, 722
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	8 cut(s)	308, 386, 416, 479, 566, 599, 643, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 35, 195, 263, 622
HpyF3I	CTNAG	5 cut(s)	171, 666, 692, 759, 836
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	3 cut(s)	312, 713, 869
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	107, 540, 893
LweI	GCATC	2 cut(s)	488, 586
MaeI	CTAG	2 cut(s)	285, 704
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	259, 631
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	7 cut(s)	8, 140, 151, 302, 376, 457, 840
MluNI	TGGCCA	1 cut(s)	903
MmeI	TCCRAC	3 cut(s)	301, 499, 698
MnlI	CCTC	9 cut(s)	56, 62, 108, 156, 230, 707, 746, 754, 869
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	4 cut(s)	86, 216, 227, 339
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	5 cut(s)	222, 233, 632, 790, 873
MvaI	CCWGG	4 cut(s)	222, 233, 632, 873
MwoI	GCNNNNNNNGC	5 cut(s)	11, 35, 195, 263, 622
NciI	CCSGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	312, 713, 869
NlaIV	GGNNCC	3 cut(s)	435, 523, 741
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	1 cut(s)	869
PasI	CCCWGGG	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	732
PciI	ACATGT	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	1 cut(s)	792
PfeI	GAWTC	7 cut(s)	77, 357, 389, 410, 490, 584, 604
PscI	ACATGT	1 cut(s)	865
Psp1406I	AACGTT	1 cut(s)	780
Psp6I	CCWGG	4 cut(s)	220, 231, 630, 871
PspGI	CCWGG	4 cut(s)	220, 231, 630, 871
PspN4I	GGNNCC	3 cut(s)	435, 523, 741
PspPI	GGNCC	2 cut(s)	239, 274
PstNI	CAGNNNCTG	1 cut(s)	665
SaqAI	TTAA	4 cut(s)	86, 216, 227, 339
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	239, 274
ScrFI	CCNGG	5 cut(s)	222, 233, 632, 790, 873
SduI	GDGCHC	2 cut(s)	259, 631
SfaNI	GCATC	2 cut(s)	488, 586
SinI	GGWCC	2 cut(s)	239, 274
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	7 cut(s)	8, 140, 151, 302, 376, 457, 840
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	2 cut(s)	27, 525
SspMI	CTAG	2 cut(s)	285, 704
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	5 cut(s)	220, 231, 630, 788, 871
StyI	CCWWGG	4 cut(s)	362, 399, 429, 538
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	607
TasI	AATT	7 cut(s)	8, 140, 151, 302, 376, 457, 840
TfiI	GAWTC	7 cut(s)	77, 357, 389, 410, 490, 584, 604
Tru1I	TTAA	4 cut(s)	86, 216, 227, 339
Tru9I	TTAA	4 cut(s)	86, 216, 227, 339
TscAI	CASTG	5 cut(s)	514, 585, 606, 666, 778
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	741, 876
TspRI	CASTG	5 cut(s)	514, 585, 606, 666, 778
VpaK11BI	GGWCC	2 cut(s)	239, 274
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	3 cut(s)	140, 151, 376
XceI	RCATGY	1 cut(s)	869
XspI	CTAG	2 cut(s)	285, 704
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.