Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0003995

Physical Location & Seq

Genomic Coordinates Forward (+)

55181 .. 56441

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggcacattttgctcataccagcaccaccgctactcttgctttcctcatcctcctccttctttactcttctgagtccattttgagtgatgattatggccttgagtcctcacctgtaccagattcagatgttgatctcttggagtttcctctgaaccttgagtacttggaagctgagttcttcctgtatggctctttgggttttggcttggacacagtcgctccaaacttgacattgggaggtccaaaaccccttggtgctaagaaagccaaactggaccctttcactagggatgtgatagaacagtttgcatggcaagaagttggacacttgagggctattaaaaagacggtgaaaggtttcccaaggccacaattggatttaagtgcaaaatcatttgcaaaagtgtttaatcttgcatttgggcgtgttttgaagccgccatttgatccttatgcgaatagcttgaactatctccttgcatcctatttgatcccttatgttggtcttactggttatgttggagcaaacccaaaactccaaggctctacttccaaaaggcttgttgcaggtcttttgggtgtggaatcaggacaagatgcagtgattcgaacattgttgtatgagcaggctctgatgaaagtgcatccatatgatatatcagtggccgagttcacaaatcggctttctgatctgaggaacaagctgggaaaagcaggtttgaaagatgaaggccttttggttccaaaatatctaggagctgagggaaaaatcagtggcaatgttcttgccggagacgaatattcagttgcatatgacaggacaccggaggagatactgaggattgtatatggatcaggtgatgaacacgtccctgggggtttctatccgaaaggagctgatggtcgtattgccaaatcttatctacaaaatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

312

Amino Acids

34.03

Weight (kDa)

5.65

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47980
fragaria_vesca	FvH4_4g20640
malus_domestica	MD13G1149100.v1.1 MD16G1149300.v1.1 MD16G1149400.v1.1
prunus_persica	Prupe.1G113100_v2.0.a1
pyrus_communis	pycom16g12760 pycom16g12780
rosa_chinensis	RchiOBHm_Chr4g0426001 RchiOBHm_Chr4g0426041 RchiOBHm_Chr4g0426051
rosa_laevigata	RLG00000007321 RLG00000007322 RLG00000007324
rosa_multiflora	Rmu_ssc0000281.1_g000008 Rmu_ssc0000281.1_g000015 Rmu_ssc0000281.1_g000019
rosa_roxburghii	Rroxscaffold_5G00368010 Rroxscaffold_5G00368030 Rroxscaffold_5G00368040
rosa_rugosa	Rorug04G0207900 Rorug04G0208100
rosa_samantha	Rh4AG265000 Rh4AG265100 Rh4BG270900 Rh4BG271200 Rh4CG283500 Rh4CG283800 Rh4CG284000 Rh4CG284100 Rh4DG267500
rosa_wichuraiana	Rw4G022890 Rw4G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	560, 707
AciI	CCGC	2 cut(s)	30, 440
AclWI	GGATC	3 cut(s)	443, 487, 862
AcoI	YGGCCR	1 cut(s)	666
AfaI	GTAC	2 cut(s)	117, 164
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	3 cut(s)	436, 469, 724
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	173, 465, 706, 761, 899
AluI	AGCT	5 cut(s)	173, 465, 706, 761, 899
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	3 cut(s)	443, 487, 862
AlwNI	CAGNNNCTG	1 cut(s)	634
AoxI	GGCC	4 cut(s)	97, 368, 666, 733
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	242, 277
AsuHPI	GGTGA	3 cut(s)	102, 364, 872
AsuII	TTCGAA	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	242, 277
BbvCI	CCTCAGC	1 cut(s)	762
BccI	CCATC	1 cut(s)	896
BciT130I	CCWGG	1 cut(s)	876
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	288, 755
BfuAI	ACCTGC	2 cut(s)	560, 707
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	2 cut(s)	242, 277
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	242, 277
BmiI	GGNNCC	2 cut(s)	279, 744
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	3 cut(s)	491, 589, 655
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu14I	TTCGAA	1 cut(s)	610
BpuEI	CTTGAG	3 cut(s)	122, 179, 352
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	5 cut(s)	253, 365, 541, 874, 875
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	279, 517
Bse3DI	GCAATG	1 cut(s)	787
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	5 cut(s)	253, 365, 541, 874, 875
BseGI	GGATG	4 cut(s)	48, 298, 482, 646
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	787
BseMII	CTCAG	5 cut(s)	63, 165, 686, 753, 830
BseNI	ACTGG	2 cut(s)	279, 517
BseRI	GAGGAG	2 cut(s)	44, 845
BseYI	CCCAGC	1 cut(s)	706
BshFI	GGCC	4 cut(s)	99, 370, 668, 735
BsiSI	CCGG	2 cut(s)	792, 827
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	789
BsmBI	CGTCTC	1 cut(s)	789
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	4 cut(s)	99, 370, 668, 735
Bsp119I	TTCGAA	1 cut(s)	610
Bsp143I	GATC	5 cut(s)	133, 448, 492, 691, 854
BspACI	CCGC	2 cut(s)	30, 440
BspANI	GGCC	4 cut(s)	99, 370, 668, 735
BspCNI	CTCAG	5 cut(s)	64, 166, 687, 754, 831
BspLI	GGNNCC	2 cut(s)	279, 744
BspMI	ACCTGC	2 cut(s)	560, 707
BspPI	GGATC	3 cut(s)	443, 487, 862
BspT104I	TTCGAA	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	279, 517
BssECI	CCNNGG	5 cut(s)	253, 365, 541, 874, 875
BssMI	GATC	5 cut(s)	133, 448, 492, 691, 854
BssT1I	CCWWGG	3 cut(s)	253, 365, 541
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	3 cut(s)	217, 306, 352
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	6 cut(s)	72, 174, 261, 695, 762, 839
BstF5I	GGATG	4 cut(s)	48, 298, 482, 646
BstKTI	GATC	5 cut(s)	136, 451, 495, 694, 857
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	5 cut(s)	133, 448, 492, 691, 854
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 38, 266
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BsuRI	GGCC	4 cut(s)	99, 370, 668, 735
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	4 cut(s)	48, 298, 482, 646
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	609, 669, 781
BveI	ACCTGC	2 cut(s)	560, 707
Cac8I	GCNNGC	1 cut(s)	630
CaiI	CAGNNNCTG	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	242, 277
Csp6I	GTAC	2 cut(s)	116, 163
CviAII	CATG	1 cut(s)	312
CviQI	GTAC	2 cut(s)	116, 163
DdeI	CTNAG	6 cut(s)	72, 174, 261, 695, 762, 839
DpnI	GATC	5 cut(s)	135, 450, 494, 693, 856
DpnII	GATC	5 cut(s)	133, 448, 492, 691, 854
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	253, 365, 541
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	242, 277
EcoRII	CCWGG	1 cut(s)	874
EcoT14I	CCWWGG	3 cut(s)	253, 365, 541
ErhI	CCWWGG	3 cut(s)	253, 365, 541
Esp3I	CGTCTC	1 cut(s)	789
FaeI	CATG	1 cut(s)	315
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	1 cut(s)	311
FauNDI	CATATG	2 cut(s)	652, 814
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	4 cut(s)	35, 305, 469, 633
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	288, 755
GluI	GCNGC	1 cut(s)	440
GsaI	CCCAGC	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	99, 370, 668, 735
HapII	CCGG	2 cut(s)	792, 827
Hin1II	CATG	1 cut(s)	315
HinfI	GANTC	5 cut(s)	74, 104, 122, 587, 607
HpaII	CCGG	2 cut(s)	792, 827
HphI	GGTGA	3 cut(s)	102, 364, 872
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	7 cut(s)	73, 127, 153, 636, 691, 696, 891
Hpy188III	TCNNGA	1 cut(s)	591
Hpy8I	GTNNAC	1 cut(s)	675
HpyAV	CCTTC	2 cut(s)	68, 725
HpyCH4III	ACNGT	3 cut(s)	217, 306, 352
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	9 cut(s)	311, 389, 401, 419, 482, 569, 602, 646, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 38, 266
HpyF3I	CTNAG	6 cut(s)	72, 174, 261, 695, 762, 839
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	1 cut(s)	315
Kzo9I	GATC	5 cut(s)	133, 448, 492, 691, 854
LmnI	GCTCC	4 cut(s)	226, 524, 758, 896
LweI	GCATC	3 cut(s)	491, 589, 655
MaeI	CTAG	2 cut(s)	288, 755
MaeII	ACGT	1 cut(s)	870
MalI	GATC	5 cut(s)	135, 450, 494, 693, 856
MboI	GATC	5 cut(s)	133, 448, 492, 691, 854
MboII	GAAGA	2 cut(s)	60, 172
MfeI	CAATTG	1 cut(s)	374
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	83, 113
MmeI	TCCRAC	2 cut(s)	304, 502
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	3 cut(s)	342, 383, 411
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	2 cut(s)	792, 827
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	3 cut(s)	11, 38, 266
NdeI	CATATG	2 cut(s)	652, 814
NdeII	GATC	5 cut(s)	133, 448, 492, 691, 854
NlaIII	CATG	1 cut(s)	315
NlaIV	GGNNCC	2 cut(s)	279, 744
NmeAIII	GCCGAG	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	122, 587, 607
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	441
PleI	GAGTC	2 cut(s)	82, 112
PpsI	GAGTC	2 cut(s)	82, 112
Psp6I	CCWGG	1 cut(s)	874
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	279, 744
PspPI	GGNCC	2 cut(s)	242, 277
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PstNI	CAGNNNCTG	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	117, 164
RsaNI	GTAC	2 cut(s)	116, 163
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	342, 383, 411
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	5 cut(s)	133, 448, 492, 691, 854
Sau96I	GGNCC	2 cut(s)	242, 277
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	2 cut(s)	83, 113
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	3 cut(s)	491, 589, 655
SfuI	TTCGAA	1 cut(s)	610
SinI	GGWCC	2 cut(s)	242, 277
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	3 cut(s)	101, 158, 331
SmoI	CTYRAG	3 cut(s)	101, 158, 331
Sse9I	AATT	1 cut(s)	374
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	2 cut(s)	30, 440
SspI	AATATT	1 cut(s)	803
SspMI	CTAG	2 cut(s)	288, 755
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	874
StyI	CCWWGG	3 cut(s)	253, 365, 541
TaaI	ACNGT	3 cut(s)	217, 306, 352
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	1 cut(s)	610
TasI	AATT	1 cut(s)	374
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	3 cut(s)	122, 587, 607
Tru1I	TTAA	3 cut(s)	342, 383, 411
Tru9I	TTAA	3 cut(s)	342, 383, 411
TscAI	CASTG	3 cut(s)	609, 669, 781
TspDTI	ATGAA	3 cut(s)	653, 744, 879
TspRI	CASTG	3 cut(s)	609, 669, 781
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	242, 277
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	288, 755
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.