Rw4G022890

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003995
Physical Location & Seq
Reverse (-)
48381184 .. 48382446
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022890.1

Sequence Viewer

Length: 933 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTATTCTTGCTTTCCTCATCCTTCTTCACTCTTCTGAGTCCATTTTGAGTGATGAGTATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTCCAAACTTGACATTGGGAGGTCCTAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCCTTTCACTAGGGATGTAATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAAAAGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCACCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGGCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCGGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGCTGTATAAGCATGCTCTGGTGAAAGTGCATCCATATGATATAACAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGACAAACAGGTTTGAAAGATGAAGGCCTTTTGGTCCCAAAATATAAAGGAGCTGAGGGAAAAATCAGAGGCAATGTTCTTGCCGGAGACGAATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTGAAGATTGTATATGGATCAGGTGATGAACACGTCCCTGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTCATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

310

Amino Acids

33.88

Weight (kDa)

6.72

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 40 - 207 1.3e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 563
AclWI GGATC 3 cut(s) 437, 481, 856
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 111, 158
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 3 cut(s) 430, 463, 718
AjiI CACGTC 1 cut(s) 865
AjnI CCWGG 1 cut(s) 868
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 6 cut(s) 167, 332, 459, 700, 755, 893
AluI AGCT 6 cut(s) 167, 332, 459, 700, 755, 893
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 3 cut(s) 437, 481, 856
AoxI GGCC 4 cut(s) 91, 362, 660, 727
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 236, 271, 736
AsuHPI GGTGA 3 cut(s) 96, 643, 866
AsuII TTCGAA 1 cut(s) 604
AvaII GGWCC 3 cut(s) 236, 271, 736
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 1 cut(s) 890
BciT130I CCWGG 1 cut(s) 870
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 870
Bme18I GGWCC 3 cut(s) 236, 271, 736
BmgBI CACGTC 1 cut(s) 865
BmgT120I GGNCC 3 cut(s) 236, 271, 736
BmiI GGNNCC 3 cut(s) 273, 356, 738
BmrFI CCNGG 1 cut(s) 870
BmsI GCATC 3 cut(s) 485, 583, 649
Bpu10I CCTNAGC 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 604
BpuEI CTTGAG 3 cut(s) 116, 173, 346
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 247, 359, 535, 868, 869
BsaWI WCCGGW 1 cut(s) 820
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 2 cut(s) 273, 511
Bse3DI GCAATG 2 cut(s) 608, 781
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 870
BseDI CCNNGG 5 cut(s) 247, 359, 535, 868, 869
BseGI GGATG 4 cut(s) 48, 292, 476, 640
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 2 cut(s) 608, 781
BseMII CTCAG 4 cut(s) 57, 159, 680, 747
BseNI ACTGG 2 cut(s) 273, 511
BseRI GAGGAG 1 cut(s) 839
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 4 cut(s) 93, 364, 662, 729
BsiSI CCGG 2 cut(s) 786, 821
BslFI GGGAC 3 cut(s) 717, 722, 851
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 783
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 3 cut(s) 717, 722, 851
BsnI GGCC 4 cut(s) 93, 364, 662, 729
Bsp119I TTCGAA 1 cut(s) 604
Bsp143I GATC 5 cut(s) 127, 442, 486, 685, 848
BspACI CCGC 2 cut(s) 30, 563
BspANI GGCC 4 cut(s) 93, 364, 662, 729
BspCNI CTCAG 4 cut(s) 58, 160, 681, 748
BspLI GGNNCC 3 cut(s) 273, 356, 738
BspPI GGATC 3 cut(s) 437, 481, 856
BspT104I TTCGAA 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 608, 781
BsrI ACTGG 2 cut(s) 273, 511
BssECI CCNNGG 5 cut(s) 247, 359, 535, 868, 869
BssMI GATC 5 cut(s) 127, 442, 486, 685, 848
BssT1I CCWWGG 3 cut(s) 247, 359, 535
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 4 cut(s) 300, 346, 369, 658
Bst6I CTCTTC 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 5 cut(s) 66, 168, 255, 689, 756
BstF5I GGATG 4 cut(s) 48, 292, 476, 640
BstKTI GATC 5 cut(s) 130, 445, 489, 688, 851
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 5 cut(s) 127, 442, 486, 685, 848
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 260, 619
BstNI CCWGG 1 cut(s) 870
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 868
BsuRI GGCC 4 cut(s) 93, 364, 662, 729
BtrI CACGTC 1 cut(s) 865
BtsCI GGATG 4 cut(s) 48, 292, 476, 640
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 351, 603, 663
Cac8I GCNNGC 1 cut(s) 624
Cfr13I GGNCC 3 cut(s) 236, 271, 736
Csp6I GTAC 2 cut(s) 110, 157
CviAII CATG 2 cut(s) 306, 623
CviQI GTAC 2 cut(s) 110, 157
DdeI CTNAG 5 cut(s) 66, 168, 255, 689, 756
DpnI GATC 5 cut(s) 129, 444, 488, 687, 850
DpnII GATC 5 cut(s) 127, 442, 486, 685, 848
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 247, 359, 535
Eco147I AGGCCT 1 cut(s) 729
Eco47I GGWCC 3 cut(s) 236, 271, 736
Eco57I CTGAAG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 3 cut(s) 247, 359, 535
ErhI CCWWGG 3 cut(s) 247, 359, 535
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 2 cut(s) 309, 626
FaqI GGGAC 3 cut(s) 717, 722, 851
FatI CATG 2 cut(s) 305, 622
FauI CCCGC 1 cut(s) 556
FauNDI CATATG 2 cut(s) 646, 808
FokI GGATG 4 cut(s) 35, 299, 463, 627
FspBI CTAG 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 704
HaeIII GGCC 4 cut(s) 93, 364, 662, 729
HapII CCGG 2 cut(s) 786, 821
Hin1II CATG 2 cut(s) 309, 626
HinfI GANTC 5 cut(s) 68, 98, 116, 581, 601
HpaII CCGG 2 cut(s) 786, 821
HphI GGTGA 3 cut(s) 96, 643, 866
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 7 cut(s) 67, 121, 147, 685, 690, 770, 885
Hpy188III TCNNGA 1 cut(s) 585
Hpy8I GTNNAC 1 cut(s) 669
HpyAV CCTTC 2 cut(s) 62, 719
HpyCH4III ACNGT 4 cut(s) 300, 346, 369, 658
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 8 cut(s) 305, 383, 395, 413, 476, 596, 640, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 260, 619
HpyF3I CTNAG 5 cut(s) 66, 168, 255, 689, 756
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 2 cut(s) 309, 626
Kzo9I GATC 5 cut(s) 127, 442, 486, 685, 848
LmnI GCTCC 4 cut(s) 220, 518, 752, 890
LweI GCATC 3 cut(s) 485, 583, 649
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 864
MalI GATC 5 cut(s) 129, 444, 488, 687, 850
MboI GATC 5 cut(s) 127, 442, 486, 685, 848
MboII GAAGA 4 cut(s) 47, 54, 166, 847
MlyI GAGTC 2 cut(s) 77, 107
MmeI TCCRAC 3 cut(s) 298, 351, 496
MnlI CCTC 8 cut(s) 56, 112, 153, 227, 684, 751, 764, 817
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 336, 377, 405
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 2 cut(s) 786, 821
MspR9I CCNGG 1 cut(s) 870
MvaI CCWGG 1 cut(s) 870
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 260, 619
NdeI CATATG 2 cut(s) 646, 808
NdeII GATC 5 cut(s) 127, 442, 486, 685, 848
NlaIII CATG 2 cut(s) 309, 626
NlaIV GGNNCC 3 cut(s) 273, 356, 738
NmeAIII GCCGAG 1 cut(s) 688
NspI RCATGY 1 cut(s) 626
NspV TTCGAA 1 cut(s) 604
PaeI GCATGC 1 cut(s) 626
PasI CCCWGGG 1 cut(s) 869
PceI AGGCCT 1 cut(s) 729
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 3 cut(s) 116, 581, 601
PleI GAGTC 2 cut(s) 76, 106
PpsI GAGTC 2 cut(s) 76, 106
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 868
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 868
PspN4I GGNNCC 3 cut(s) 273, 356, 738
PspPI GGNCC 3 cut(s) 236, 271, 736
PspPPI RGGWCCY 1 cut(s) 236
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
RsaI GTAC 2 cut(s) 111, 158
RsaNI GTAC 2 cut(s) 110, 157
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 3 cut(s) 336, 377, 405
Sau3AI GATC 5 cut(s) 127, 442, 486, 685, 848
Sau96I GGNCC 3 cut(s) 236, 271, 736
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 2 cut(s) 77, 107
ScrFI CCNGG 1 cut(s) 870
SfaNI GCATC 3 cut(s) 485, 583, 649
SfuI TTCGAA 1 cut(s) 604
SinI GGWCC 3 cut(s) 236, 271, 736
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 95, 152, 325
SmoI CTYRAG 3 cut(s) 95, 152, 325
SphI GCATGC 1 cut(s) 626
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 2 cut(s) 30, 563
SspI AATATT 1 cut(s) 797
SspMI CTAG 1 cut(s) 282
StuI AGGCCT 1 cut(s) 729
StyD4I CCNGG 1 cut(s) 868
StyI CCWWGG 3 cut(s) 247, 359, 535
TaaI ACNGT 4 cut(s) 300, 346, 369, 658
TaiI ACGT 1 cut(s) 867
TaqI TCGA 1 cut(s) 604
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 3 cut(s) 116, 581, 601
Tru1I TTAA 3 cut(s) 336, 377, 405
Tru9I TTAA 3 cut(s) 336, 377, 405
TscAI CASTG 3 cut(s) 351, 603, 663
TspDTI ATGAA 2 cut(s) 738, 873
TspRI CASTG 3 cut(s) 351, 603, 663
VpaK11BI GGWCC 3 cut(s) 236, 271, 736
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.