MD13G1149100.v1.1

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0003995
Physical Location & Seq
Forward (+)
11724998 .. 11726427
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1149100.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGCTACATTTGCTTATGCCACAGCCATTGCTGCCTTCCTCATCCTCCTTCCACTATCTTGCTATTCCGAATCGATATTGGACCACCATCACGACTCCTCCTCCATCCCGCAATCGGATGTCGATCTTTTGGAGTTTCCTTTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTTTGTATGGTGCTTTCGGGCATGGCTTGGATACAGTTGATCCGAGCTTAACCCTAGGAGGTCCAACTCCCATTGGTGCTAAAAGGGCACAGTTGGACCACTTCACTAGGGATGTCATCGAGCAATTTGGATGGCAAGAAGTTGGACATTTGAGTGCAGAATCATTTGCCCATGTGTTTGATTCTGCATTTGGGAGTCCCTTAAATCCACCATTTGACCCTTATGCCAATTCAATCAACTATCTCCTTGCATCCTATTTGATTCCTTATGTTGGTCTCACTGGCTATGTTGGTGCAAGCCCTAAGCTCCAAGGTGCTGCTTCCAAAAGGCTAGTTGCAGGTCTTTTGGGCGTGGAATCAGGGCAAGATGCAGTGATTCGAGCACTGCTATACGAGCACGCGAACCTGATAGTGAAACCGTATGGCATTACAGTGGCCGAGTTCACAAATCGTCTTTCGGATCTAAGGAATAAGCTAGGACGCACAGGTTTGAAAGATGAAGGCCTTGTGGTTCACGAATACATAGGCGCTGAGGGAAAAATTAGCGGCAACATTCTCGCCGGAGACAAGTACTCGGTTGCATATGACAGGACTCCAGAGGAGATCCTAAGGATCGTATATGGTAGCGGCGATGAACGTGTCACTGGCGGTATCTACCCTAAAGGAGCTGACGGCCGGATTGCTAAATCTTATTTGAAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

293

Amino Acids

31.66

Weight (kDa)

5.18

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 39 - 189 2.2e-30 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AccII CGCG 1 cut(s) 572
AciI CCGC 4 cut(s) 110, 717, 798, 819
AclWI GGATC 4 cut(s) 206, 639, 769, 791
AcoI YGGCCR 2 cut(s) 606, 844
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 115, 443
AflIII ACRYGT 1 cut(s) 808
AgsI TTSAA 4 cut(s) 145, 405, 664, 868
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 5 cut(s) 164, 219, 478, 646, 839
AluI AGCT 5 cut(s) 164, 219, 478, 646, 839
Alw21I GWGCWC 2 cut(s) 556, 570
Alw26I GTCTC 2 cut(s) 452, 729
AlwI GGATC 4 cut(s) 206, 639, 769, 791
AoxI GGCC 3 cut(s) 606, 673, 844
ApeKI GCWGC 2 cut(s) 32, 488
ApoI RAATTY 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 226
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 3 cut(s) 82, 233, 268
AvaII GGWCC 3 cut(s) 82, 233, 268
AvrII CCTAGG 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 556, 570
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 19, 475
BccI CCATC 3 cut(s) 96, 113, 297
BceAI ACGGC 1 cut(s) 859
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 452, 729
BfaI CTAG 4 cut(s) 227, 279, 503, 647
BfoI RGCGCY 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 500
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 4 cut(s) 33, 489, 718, 799
BlnI CCTAGG 1 cut(s) 226
BlsI GCNGC 4 cut(s) 34, 490, 719, 800
BmcAI AGTACT 1 cut(s) 743
Bme18I GGWCC 3 cut(s) 82, 233, 268
BmgT120I GGNCC 3 cut(s) 82, 233, 268
BmsI GCATC 2 cut(s) 431, 529
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 2 cut(s) 474, 702
Bsa29I ATCGAT 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 226, 481
BsaXI ACNNNNNCTCC 4 cut(s) 83, 86, 113, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 443
Bse1I ACTGG 2 cut(s) 457, 820
Bse21I CCTNAGG 1 cut(s) 779
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 123
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 226, 481
BseGI GGATG 6 cut(s) 42, 105, 124, 289, 308, 422
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 115, 443
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 156, 693
BseNI ACTGG 2 cut(s) 457, 820
BseRI GAGGAG 3 cut(s) 88, 91, 785
BseSI GKGCMC 1 cut(s) 262
BseX3I CGGCCG 1 cut(s) 844
BseXI GCAGC 2 cut(s) 19, 475
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 572
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 3 cut(s) 608, 675, 846
BshVI ATCGAT 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 2 cut(s) 556, 570
BsiSI CCGG 2 cut(s) 732, 847
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 115, 443
BsmAI GTCTC 2 cut(s) 452, 729
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 3 cut(s) 608, 675, 846
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 3 cut(s) 262, 556, 570
Bsp143I GATC 5 cut(s) 124, 211, 631, 774, 783
BspACI CCGC 4 cut(s) 110, 717, 798, 819
BspANI GGCC 3 cut(s) 608, 675, 846
BspCNI CTCAG 2 cut(s) 157, 694
BspDI ATCGAT 1 cut(s) 74
BspFNI CGCG 1 cut(s) 572
BspMI ACCTGC 1 cut(s) 500
BspPI GGATC 4 cut(s) 206, 639, 769, 791
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 2 cut(s) 457, 820
BssECI CCNNGG 2 cut(s) 226, 481
BssMI GATC 5 cut(s) 124, 211, 631, 774, 783
BssT1I CCWWGG 2 cut(s) 226, 481
Bst4CI ACNGT 4 cut(s) 208, 264, 591, 604
BstC8I GCNNGC 2 cut(s) 469, 570
BstDEI CTNAG 5 cut(s) 165, 474, 635, 702, 779
BstF5I GGATG 6 cut(s) 42, 105, 124, 289, 308, 422
BstFNI CGCG 1 cut(s) 572
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 5 cut(s) 127, 214, 634, 777, 786
BstMAI GTCTC 2 cut(s) 452, 729
BstMBI GATC 5 cut(s) 124, 211, 631, 774, 783
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 4 cut(s) 11, 32, 257, 565
BstSLI GKGCMC 1 cut(s) 262
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 19, 475
BstX2I RGATCY 2 cut(s) 631, 774
BstYI RGATCY 2 cut(s) 631, 774
BstZI CGGCCG 1 cut(s) 844
Bsu15I ATCGAT 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 779
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 3 cut(s) 608, 675, 846
BsuTUI ATCGAT 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 6 cut(s) 42, 105, 124, 289, 308, 422
BtsI GCAGTG 2 cut(s) 549, 554
BtsIMutI CAGTG 5 cut(s) 450, 549, 554, 609, 813
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 2 cut(s) 469, 570
CfoI GCGC 1 cut(s) 701
Cfr13I GGNCC 3 cut(s) 82, 233, 268
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 1 cut(s) 660
Csp6I GTAC 1 cut(s) 742
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 2 cut(s) 194, 344
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 5 cut(s) 165, 474, 635, 702, 779
DpnI GATC 5 cut(s) 126, 213, 633, 776, 785
DpnII GATC 5 cut(s) 124, 211, 631, 774, 783
EaeI YGGCCR 2 cut(s) 606, 844
EagI CGGCCG 1 cut(s) 844
EclXI CGGCCG 1 cut(s) 844
Eco130I CCWWGG 2 cut(s) 226, 481
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 3 cut(s) 82, 233, 268
Eco52I CGGCCG 1 cut(s) 844
Eco81I CCTNAGG 1 cut(s) 779
EcoT14I CCWWGG 2 cut(s) 226, 481
ErhI CCWWGG 2 cut(s) 226, 481
FaeI CATG 2 cut(s) 197, 347
FaqI GGGAC 1 cut(s) 354
FatI CATG 2 cut(s) 193, 343
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 1 cut(s) 754
Fnu4HI GCNGC 4 cut(s) 33, 489, 718, 799
FokI GGATG 6 cut(s) 29, 92, 131, 296, 315, 409
Fsp4HI GCNGC 4 cut(s) 33, 489, 718, 799
FspBI CTAG 4 cut(s) 227, 279, 503, 647
GlaI GCGC 1 cut(s) 700
GluI GCNGC 4 cut(s) 33, 489, 718, 799
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 3 cut(s) 608, 675, 846
HapII CCGG 2 cut(s) 732, 847
HgaI GACGC 1 cut(s) 660
HhaI GCGC 1 cut(s) 701
Hin1II CATG 2 cut(s) 197, 347
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HinfI GANTC 9 cut(s) 71, 95, 332, 353, 367, 433, 527, 547, 763
HpaII CCGG 2 cut(s) 732, 847
Hpy166II GTNNAC 2 cut(s) 615, 685
Hpy188I TCNGA 4 cut(s) 70, 118, 216, 631
Hpy188III TCNNGA 3 cut(s) 92, 686, 767
Hpy8I GTNNAC 2 cut(s) 615, 685
HpyAV CCTTC 3 cut(s) 46, 59, 665
HpyCH4III ACNGT 4 cut(s) 208, 264, 591, 604
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 7 cut(s) 329, 359, 422, 467, 509, 542, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 32, 257, 565
HpyF3I CTNAG 5 cut(s) 165, 474, 635, 702, 779
HpySE526I ACGT 1 cut(s) 808
Hsp92II CATG 2 cut(s) 197, 347
HspAI GCGC 1 cut(s) 699
Kzo9I GATC 5 cut(s) 124, 211, 631, 774, 783
LmnI GCTCC 2 cut(s) 483, 836
Lsp1109I GCAGC 2 cut(s) 19, 475
LweI GCATC 2 cut(s) 431, 529
MaeI CTAG 4 cut(s) 227, 279, 503, 647
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 1 cut(s) 811
MalI GATC 5 cut(s) 126, 213, 633, 776, 785
MboI GATC 5 cut(s) 124, 211, 631, 774, 783
MflI RGATCY 2 cut(s) 631, 774
MhlI GDGCHC 3 cut(s) 262, 556, 570
MluCI AATT 4 cut(s) 145, 296, 400, 711
MlyI GAGTC 3 cut(s) 89, 376, 757
MmeI TCCRAC 3 cut(s) 246, 260, 295
MnlI CCTC 7 cut(s) 50, 56, 109, 112, 224, 697, 763
MseI TTAA 2 cut(s) 221, 374
MslI CAYNNNNRTG 2 cut(s) 324, 602
MspI CCGG 2 cut(s) 732, 847
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 4 cut(s) 11, 32, 257, 565
NdeI CATATG 1 cut(s) 754
NdeII GATC 5 cut(s) 124, 211, 631, 774, 783
NlaIII CATG 2 cut(s) 197, 347
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 1 cut(s) 811
PceI AGGCCT 1 cut(s) 675
PfeI GAWTC 6 cut(s) 71, 332, 353, 433, 527, 547
PkrI GCNGC 4 cut(s) 34, 490, 719, 800
PleI GAGTC 3 cut(s) 89, 375, 757
PpsI GAGTC 3 cut(s) 89, 375, 757
PspPI GGNCC 3 cut(s) 82, 233, 268
PsuI RGATCY 2 cut(s) 631, 774
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 2 cut(s) 324, 602
SaqAI TTAA 2 cut(s) 221, 374
SatI GCNGC 4 cut(s) 33, 489, 718, 799
Sau3AI GATC 5 cut(s) 124, 211, 631, 774, 783
Sau96I GGNCC 3 cut(s) 82, 233, 268
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 3 cut(s) 89, 376, 757
SduI GDGCHC 3 cut(s) 262, 556, 570
SfaNI GCATC 2 cut(s) 431, 529
SinI GGWCC 3 cut(s) 82, 233, 268
SmiMI CAYNNNNRTG 2 cut(s) 324, 602
Sse9I AATT 4 cut(s) 145, 296, 400, 711
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 4 cut(s) 110, 717, 798, 819
SspMI CTAG 4 cut(s) 227, 279, 503, 647
StuI AGGCCT 1 cut(s) 675
StyI CCWWGG 2 cut(s) 226, 481
TaaI ACNGT 4 cut(s) 208, 264, 591, 604
TaiI ACGT 1 cut(s) 811
TaqI TCGA 4 cut(s) 74, 123, 291, 550
TasI AATT 4 cut(s) 145, 296, 400, 711
TatI WGTACW 1 cut(s) 741
TauI GCSGC 2 cut(s) 720, 801
TfiI GAWTC 6 cut(s) 71, 332, 353, 433, 527, 547
Tru1I TTAA 2 cut(s) 221, 374
Tru9I TTAA 2 cut(s) 221, 374
TscAI CASTG 5 cut(s) 457, 549, 561, 609, 820
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 32, 488
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 2 cut(s) 684, 819
TspRI CASTG 5 cut(s) 457, 549, 561, 609, 820
VpaK11BI GGWCC 3 cut(s) 82, 233, 268
XapI RAATTY 1 cut(s) 145
XmaJI CCTAGG 1 cut(s) 226
XspI CTAG 4 cut(s) 227, 279, 503, 647
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.