Rh4DG267500

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003995
Physical Location & Seq
Reverse (-)
48665352 .. 48685319
19968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG267500.1

Sequence Viewer

Length: 939 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTACTCTTGCTTTCCTCATCCTCCTCCTTCTTTACTCTTCTGAGTCCATTTTGAGTGATGATTATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACACAGTCGCTCCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAAAAGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCACCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGGCTTACCGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCGGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGCTGTATAAGCATGCTCTGGTGAAAGTGCATCCATATGATATAACAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGACAAACAGGTTTGAAAGATGAAGGCCTTTTGGTTCCAAAATATAAAGGAGCTGAGGGAAAAATCAGAGGCAATGTTCTTGCCGGAGACGAATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTGAAGATTGTATATGGATCAGGTGATGAACGTGTCCCTGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTCATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

312

Amino Acids

34.1

Weight (kDa)

6.61

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 2e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 569
AclWI GGATC 3 cut(s) 443, 487, 862
AcoI YGGCCR 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 860
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 868
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 3 cut(s) 436, 469, 724
AjnI CCWGG 1 cut(s) 874
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 173, 338, 465, 706, 761, 899
AluI AGCT 6 cut(s) 173, 338, 465, 706, 761, 899
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 443, 487, 862
AoxI GGCC 4 cut(s) 97, 368, 666, 733
AsiGI ACCGGT 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 242, 277
AsuHPI GGTGA 3 cut(s) 102, 649, 872
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 242, 277
BbvCI CCTCAGC 1 cut(s) 762
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 1 cut(s) 288
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 2 cut(s) 242, 277
BmgT120I GGNCC 2 cut(s) 242, 277
BmiI GGNNCC 3 cut(s) 279, 362, 744
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 3 cut(s) 491, 589, 655
Bpu10I CCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 122, 179, 352
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BsaWI WCCGGW 2 cut(s) 512, 826
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 2 cut(s) 614, 787
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BseGI GGATG 4 cut(s) 48, 298, 482, 646
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 2 cut(s) 614, 787
BseMII CTCAG 4 cut(s) 63, 165, 686, 753
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 44, 845
BseYI CCCAGC 1 cut(s) 706
BshFI GGCC 4 cut(s) 99, 370, 668, 735
BshTI ACCGGT 1 cut(s) 512
BsiSI CCGG 3 cut(s) 513, 792, 827
BslFI GGGAC 2 cut(s) 723, 857
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 2 cut(s) 723, 857
BsnI GGCC 4 cut(s) 99, 370, 668, 735
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 5 cut(s) 133, 448, 492, 691, 854
BspACI CCGC 2 cut(s) 30, 569
BspANI GGCC 4 cut(s) 99, 370, 668, 735
BspCNI CTCAG 4 cut(s) 64, 166, 687, 754
BspLI GGNNCC 3 cut(s) 279, 362, 744
BspPI GGATC 3 cut(s) 443, 487, 862
BspT104I TTCGAA 1 cut(s) 610
BsrDI GCAATG 2 cut(s) 614, 787
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BssMI GATC 5 cut(s) 133, 448, 492, 691, 854
BssT1I CCWWGG 3 cut(s) 253, 365, 541
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 5 cut(s) 217, 306, 352, 375, 664
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 5 cut(s) 72, 174, 261, 695, 762
BstF5I GGATG 4 cut(s) 48, 298, 482, 646
BstKTI GATC 5 cut(s) 136, 451, 495, 694, 857
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 5 cut(s) 133, 448, 492, 691, 854
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 266, 625
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 874
BsuRI GGCC 4 cut(s) 99, 370, 668, 735
BtsCI GGATG 4 cut(s) 48, 298, 482, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 357, 609, 669
Cac8I GCNNGC 1 cut(s) 630
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 242, 277
Csp6I GTAC 2 cut(s) 116, 163
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 2 cut(s) 312, 629
CviQI GTAC 2 cut(s) 116, 163
DdeI CTNAG 5 cut(s) 72, 174, 261, 695, 762
DpnI GATC 5 cut(s) 135, 450, 494, 693, 856
DpnII GATC 5 cut(s) 133, 448, 492, 691, 854
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 253, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 242, 277
Eco57I CTGAAG 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 3 cut(s) 253, 365, 541
ErhI CCWWGG 3 cut(s) 253, 365, 541
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 2 cut(s) 315, 632
FaqI GGGAC 2 cut(s) 723, 857
FatI CATG 2 cut(s) 311, 628
FauI CCCGC 1 cut(s) 562
FauNDI CATATG 2 cut(s) 652, 814
FokI GGATG 4 cut(s) 35, 305, 469, 633
FspBI CTAG 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 710
HaeIII GGCC 4 cut(s) 99, 370, 668, 735
HapII CCGG 3 cut(s) 513, 792, 827
Hin1II CATG 2 cut(s) 315, 632
HinfI GANTC 5 cut(s) 74, 104, 122, 587, 607
HpaII CCGG 3 cut(s) 513, 792, 827
HphI GGTGA 3 cut(s) 102, 649, 872
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 7 cut(s) 73, 127, 153, 691, 696, 776, 891
Hpy188III TCNNGA 1 cut(s) 591
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 68, 725
HpyCH4III ACNGT 5 cut(s) 217, 306, 352, 375, 664
HpyCH4IV ACGT 1 cut(s) 868
HpyCH4V TGCA 8 cut(s) 311, 389, 401, 419, 482, 602, 646, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 266, 625
HpyF3I CTNAG 5 cut(s) 72, 174, 261, 695, 762
HpySE526I ACGT 1 cut(s) 868
Hsp92II CATG 2 cut(s) 315, 632
Kzo9I GATC 5 cut(s) 133, 448, 492, 691, 854
LmnI GCTCC 4 cut(s) 226, 524, 758, 896
LweI GCATC 3 cut(s) 491, 589, 655
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 868
MalI GATC 5 cut(s) 135, 450, 494, 693, 856
MboI GATC 5 cut(s) 133, 448, 492, 691, 854
MboII GAAGA 3 cut(s) 60, 172, 853
MlyI GAGTC 2 cut(s) 83, 113
MmeI TCCRAC 3 cut(s) 304, 357, 502
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 342, 383, 411
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 3 cut(s) 513, 792, 827
MspR9I CCNGG 1 cut(s) 876
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 266, 625
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 5 cut(s) 133, 448, 492, 691, 854
NlaIII CATG 2 cut(s) 315, 632
NlaIV GGNNCC 3 cut(s) 279, 362, 744
NmeAIII GCCGAG 1 cut(s) 694
NspI RCATGY 1 cut(s) 632
NspV TTCGAA 1 cut(s) 610
PaeI GCATGC 1 cut(s) 632
PasI CCCWGGG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 122, 587, 607
PflFI GACNNNGTC 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 512
PleI GAGTC 2 cut(s) 82, 112
PpsI GAGTC 2 cut(s) 82, 112
Psp6I CCWGG 1 cut(s) 874
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 3 cut(s) 279, 362, 744
PspPI GGNCC 2 cut(s) 242, 277
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 342, 383, 411
Sau3AI GATC 5 cut(s) 133, 448, 492, 691, 854
Sau96I GGNCC 2 cut(s) 242, 277
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 2 cut(s) 83, 113
ScrFI CCNGG 1 cut(s) 876
SfaNI GCATC 3 cut(s) 491, 589, 655
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 2 cut(s) 242, 277
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 3 cut(s) 101, 158, 331
SmoI CTYRAG 3 cut(s) 101, 158, 331
SphI GCATGC 1 cut(s) 632
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 2 cut(s) 30, 569
SspI AATATT 1 cut(s) 803
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 1 cut(s) 874
StyI CCWWGG 3 cut(s) 253, 365, 541
TaaI ACNGT 5 cut(s) 217, 306, 352, 375, 664
TaiI ACGT 1 cut(s) 871
TaqI TCGA 1 cut(s) 610
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 3 cut(s) 122, 587, 607
Tru1I TTAA 3 cut(s) 342, 383, 411
Tru9I TTAA 3 cut(s) 342, 383, 411
TscAI CASTG 3 cut(s) 357, 609, 669
TspDTI ATGAA 2 cut(s) 744, 879
TspRI CASTG 3 cut(s) 357, 609, 669
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 242, 277
XceI RCATGY 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.