FvH4_4g20640

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003995
Physical Location & Seq
Reverse (-)
23777091 .. 23778627
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20640.t1

Sequence Viewer

Length: 912 bp
ATGGCACATTTTGCTTATACCAGCACCACCGCTATTGTTTCTTTCCTCATCCTCCTCCTTGTTCCACATTCTTACTCTTCTGGTGCTGTTCCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTATATGGCTCTTTGGGTTTTGGCTTGGATAGAGTTGCTCCAAACTTGACGTCCGGTGGTCCAAAACCCATTGGTGCTAGGAAGGCCATGTTAGACCCTTCCACTAGGGATGTGATCGAACAATTTGCATGGCAAGAAGTTGGACATTTGAGAGCTATTAAAAGGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAAAGGTGTTTGATCTTGCATTTGGACGTCCTTTGAAGCCACCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCCAAACTCCAAGGCCCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTAGGTGTGGAATCAGGACAAGATGCAGTGATTAGAACAATGCTGTATAGGCAGGCTCTGGTGAGAGTGCACCCATATGGTATAACAGTAGCTGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGACAGATGGGTTTGAAAGATGAAGGCCTTCTGATTCCAAAATATAAAGGAGCTGAGGGAAAAATCAGGGGCAATGTTCTTGCTGGAGACTCATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTAAGGATTGTATATGGATCGGGTGATGAACGTGCCCCGGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTCATCTACGTTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

304

Amino Acids

33.13

Weight (kDa)

9.15

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 33 - 199 2.8e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 209, 403
Acc36I ACCTGC 1 cut(s) 533
AciI CCGC 1 cut(s) 30
AclWI GGATC 3 cut(s) 416, 460, 835
AcyI GRCGYC 2 cut(s) 206, 400
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 409, 442, 697
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 7 cut(s) 146, 311, 438, 641, 679, 734, 872
AluI AGCT 7 cut(s) 146, 311, 438, 641, 679, 734, 872
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 1 cut(s) 762
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 3 cut(s) 416, 460, 835
AlwNI CAGNNNCTG 2 cut(s) 607, 641
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 4 cut(s) 240, 341, 517, 706
ApaLI GTGCAC 1 cut(s) 617
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 2 cut(s) 332, 708
AspS9I GGNCC 2 cut(s) 215, 518
AsuC2I CCSGG 2 cut(s) 848, 849
AsuHPI GGTGA 2 cut(s) 622, 845
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 621, 847
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 1 cut(s) 735
BccI CCATC 2 cut(s) 682, 869
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcnI CCSGG 2 cut(s) 848, 849
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 234, 261
BfuAI ACCTGC 1 cut(s) 533
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 848, 849
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 2 cut(s) 215, 518
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 2 cut(s) 848, 849
BmsI GCATC 2 cut(s) 464, 562
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 848, 849
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 206, 400
BsaJI CCNNGG 5 cut(s) 338, 514, 846, 847, 848
BsaWI WCCGGW 2 cut(s) 209, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 760
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 5 cut(s) 338, 514, 846, 847, 848
BseGI GGATG 3 cut(s) 48, 271, 455
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 4 cut(s) 138, 633, 659, 726
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 44, 818
BseSI GKGCMC 2 cut(s) 621, 847
BseYI CCCAGC 1 cut(s) 679
BshFI GGCC 4 cut(s) 242, 343, 519, 708
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 3 cut(s) 210, 800, 848
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 4 cut(s) 242, 343, 519, 708
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 621, 847
Bsp143I GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
BspACI CCGC 1 cut(s) 30
BspANI GGCC 4 cut(s) 242, 343, 519, 708
BspCNI CTCAG 4 cut(s) 139, 634, 660, 727
BspLI GGNNCC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 3 cut(s) 416, 460, 835
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 5 cut(s) 338, 514, 846, 847, 848
BssMI GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
BssNI GRCGYC 2 cut(s) 206, 400
BssT1I CCWWGG 2 cut(s) 338, 514
Bst4CI ACNGT 3 cut(s) 325, 348, 637
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 2 cut(s) 206, 400
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 5 cut(s) 147, 642, 668, 735, 812
BstF5I GGATG 3 cut(s) 48, 271, 455
BstKTI GATC 7 cut(s) 109, 273, 388, 424, 468, 667, 830
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
BstMWI GCNNNNNNNGC 3 cut(s) 11, 239, 598
BstSCI CCNGG 2 cut(s) 846, 847
BstSLI GKGCMC 2 cut(s) 621, 847
BsuRI GGCC 4 cut(s) 242, 343, 519, 708
BtsCI GGATG 3 cut(s) 48, 271, 455
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 330, 582
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 603
CaiI CAGNNNCTG 2 cut(s) 607, 641
Cfr13I GGNCC 2 cut(s) 215, 518
Cfr9I CCCGGG 1 cut(s) 847
Csp6I GTAC 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 244, 285
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 5 cut(s) 147, 642, 668, 735, 812
DpnI GATC 7 cut(s) 108, 272, 387, 423, 467, 666, 829
DpnII GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 338, 514
Eco147I AGGCCT 1 cut(s) 708
Eco47I GGWCC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 847
EcoO109I RGGNCCY 1 cut(s) 518
EcoT14I CCWWGG 2 cut(s) 338, 514
ErhI CCWWGG 2 cut(s) 338, 514
FaeI CATG 2 cut(s) 247, 288
FaqI GGGAC 1 cut(s) 696
FatI CATG 2 cut(s) 243, 284
FauNDI CATATG 2 cut(s) 625, 787
FokI GGATG 3 cut(s) 35, 278, 442
FspBI CTAG 2 cut(s) 234, 261
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 4 cut(s) 242, 343, 519, 708
HapII CCGG 3 cut(s) 210, 800, 848
Hin1I GRCGYC 2 cut(s) 206, 400
Hin1II CATG 2 cut(s) 247, 288
HinfI GANTC 4 cut(s) 95, 560, 715, 770
HpaII CCGG 3 cut(s) 210, 800, 848
HphI GGTGA 2 cut(s) 622, 845
Hpy166II GTNNAC 2 cut(s) 619, 648
Hpy188I TCNGA 7 cut(s) 100, 126, 664, 669, 714, 864, 907
Hpy188III TCNNGA 2 cut(s) 92, 564
Hpy8I GTNNAC 2 cut(s) 619, 648
HpyAV CCTTC 4 cut(s) 232, 264, 698, 719
HpyCH4III ACNGT 3 cut(s) 325, 348, 637
HpyCH4IV ACGT 4 cut(s) 206, 400, 841, 901
HpyCH4V TGCA 9 cut(s) 284, 362, 374, 392, 455, 542, 575, 619, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 239, 598
HpyF3I CTNAG 5 cut(s) 147, 642, 668, 735, 812
HpySE526I ACGT 4 cut(s) 206, 400, 841, 901
Hsp92I GRCGYC 2 cut(s) 206, 400
Hsp92II CATG 2 cut(s) 247, 288
Kzo9I GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
LmnI GCTCC 4 cut(s) 199, 497, 731, 869
LweI GCATC 2 cut(s) 464, 562
MaeI CTAG 2 cut(s) 234, 261
MaeII ACGT 4 cut(s) 206, 400, 841, 901
MalI GATC 7 cut(s) 108, 272, 387, 423, 467, 666, 829
MboI GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
MboII GAAGA 2 cut(s) 69, 145
MhlI GDGCHC 2 cut(s) 621, 847
MluCI AATT 1 cut(s) 278
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 3 cut(s) 277, 330, 475
MnlI CCTC 7 cut(s) 56, 62, 65, 132, 663, 730, 796
MroXI GAANNNNTTC 2 cut(s) 332, 708
MseI TTAA 2 cut(s) 315, 356
MslI CAYNNNNRTG 1 cut(s) 624
MspI CCGG 3 cut(s) 210, 800, 848
MspR9I CCNGG 2 cut(s) 848, 849
MwoI GCNNNNNNNGC 3 cut(s) 11, 239, 598
NciI CCSGG 2 cut(s) 848, 849
NdeI CATATG 2 cut(s) 625, 787
NdeII GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
NlaIII CATG 2 cut(s) 247, 288
NlaIV GGNNCC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 708
PdmI GAANNNNTTC 2 cut(s) 332, 708
PfeI GAWTC 3 cut(s) 95, 560, 715
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 679
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 2 cut(s) 215, 518
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PstNI CAGNNNCTG 2 cut(s) 607, 641
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 2 cut(s) 315, 356
Sau3AI GATC 7 cut(s) 106, 270, 385, 421, 465, 664, 827
Sau96I GGNCC 2 cut(s) 215, 518
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 848, 849
SduI GDGCHC 2 cut(s) 621, 847
SfaNI GCATC 2 cut(s) 464, 562
SinI GGWCC 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 708
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 234, 261
StuI AGGCCT 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 846, 847
StyI CCWWGG 2 cut(s) 338, 514
TaaI ACNGT 3 cut(s) 325, 348, 637
TaiI ACGT 4 cut(s) 209, 403, 844, 904
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 3 cut(s) 95, 560, 715
Tru1I TTAA 2 cut(s) 315, 356
Tru9I TTAA 2 cut(s) 315, 356
TscAI CASTG 2 cut(s) 330, 582
TspDTI ATGAA 2 cut(s) 717, 852
TspMI CCCGGG 1 cut(s) 847
TspRI CASTG 2 cut(s) 330, 582
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 847
XmnI GAANNNNTTC 2 cut(s) 332, 708
XspI CTAG 2 cut(s) 234, 261
ZraI GACGTC 2 cut(s) 207, 401
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.