RchiOBHm_Chr4g0426041

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003995
Physical Location & Seq
Reverse (-)
51548910 .. 51550515
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39512

Sequence Viewer

Length: 939 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTACTCTTGCTTTCCTCATCCTCCTCCTTCTTTACTCTTCTGAGTCCATTTTGAGTGATGAGCATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTCGCTCCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAATTGGATTTAAGTGCAAAATCATTTGCAGATGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCGCCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGTTGTATGAGCAGGCTTGGATGAAAGTGCATCCATATGATATATCAGTGGCCGAATTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGAAAAGCAGGTTTGAAAGATGAAGGCCTTGTGGTTCCAAAATATCTAGGAGCTGAGGGAAAAATCAGTGGCAATGTTCTTGCCGGAGACGAATATTCAGTTGCATATGACAGGACACCGGAGGAGATACTGAGGATTGTATATGGATCAGGTGATGAACACGTCCCTGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTTATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

312

Amino Acids

34.09

Weight (kDa)

5.61

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 1.2e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 560, 707
AciI CCGC 2 cut(s) 30, 440
AclWI GGATC 3 cut(s) 443, 487, 862
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 1 cut(s) 671
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 3 cut(s) 436, 469, 724
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 1 cut(s) 874
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 173, 338, 465, 706, 761, 899
AluI AGCT 6 cut(s) 173, 338, 465, 706, 761, 899
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 443, 487, 862
AoxI GGCC 4 cut(s) 97, 368, 666, 733
ApoI RAATTY 1 cut(s) 671
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 242, 277
AsuHPI GGTGA 2 cut(s) 102, 872
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 242, 277
BbvCI CCTCAGC 1 cut(s) 762
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 2 cut(s) 288, 755
BfuAI ACCTGC 2 cut(s) 560, 707
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 2 cut(s) 242, 277
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 242, 277
BmiI GGNNCC 3 cut(s) 279, 362, 744
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 3 cut(s) 491, 589, 655
Bpu10I CCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 122, 179, 352
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 279, 517
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BseGI GGATG 5 cut(s) 48, 298, 482, 642, 646
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 5 cut(s) 63, 165, 686, 753, 830
BseNI ACTGG 2 cut(s) 279, 517
BseRI GAGGAG 2 cut(s) 44, 845
BseYI CCCAGC 1 cut(s) 706
BshFI GGCC 4 cut(s) 99, 370, 668, 735
BsiSI CCGG 2 cut(s) 792, 827
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 4 cut(s) 99, 370, 668, 735
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 5 cut(s) 133, 448, 492, 691, 854
BspACI CCGC 2 cut(s) 30, 440
BspANI GGCC 4 cut(s) 99, 370, 668, 735
BspCNI CTCAG 5 cut(s) 64, 166, 687, 754, 831
BspLI GGNNCC 3 cut(s) 279, 362, 744
BspMI ACCTGC 2 cut(s) 560, 707
BspPI GGATC 3 cut(s) 443, 487, 862
BspT104I TTCGAA 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 2 cut(s) 279, 517
BssECI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BssMI GATC 5 cut(s) 133, 448, 492, 691, 854
BssT1I CCWWGG 3 cut(s) 253, 365, 541
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 2 cut(s) 306, 352
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
BstF5I GGATG 5 cut(s) 48, 298, 482, 642, 646
BstKTI GATC 5 cut(s) 136, 451, 495, 694, 857
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 5 cut(s) 133, 448, 492, 691, 854
BstMWI GCNNNNNNNGC 3 cut(s) 11, 38, 266
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 874
BsuRI GGCC 4 cut(s) 99, 370, 668, 735
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 5 cut(s) 48, 298, 482, 642, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 4 cut(s) 357, 609, 669, 781
BveI ACCTGC 2 cut(s) 560, 707
Cac8I GCNNGC 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 242, 277
Csp6I GTAC 2 cut(s) 116, 163
CviAII CATG 2 cut(s) 95, 312
CviQI GTAC 2 cut(s) 116, 163
DdeI CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
DpnI GATC 5 cut(s) 135, 450, 494, 693, 856
DpnII GATC 5 cut(s) 133, 448, 492, 691, 854
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 253, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 242, 277
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 3 cut(s) 253, 365, 541
ErhI CCWWGG 3 cut(s) 253, 365, 541
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 2 cut(s) 98, 315
FaqI GGGAC 1 cut(s) 857
FatI CATG 2 cut(s) 94, 311
FauNDI CATATG 2 cut(s) 652, 814
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 5 cut(s) 35, 305, 469, 633, 649
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 288, 755
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 710
HaeIII GGCC 4 cut(s) 99, 370, 668, 735
HapII CCGG 2 cut(s) 792, 827
Hin1II CATG 2 cut(s) 98, 315
HinfI GANTC 5 cut(s) 74, 104, 122, 587, 607
HpaII CCGG 2 cut(s) 792, 827
HphI GGTGA 2 cut(s) 102, 872
Hpy188I TCNGA 6 cut(s) 73, 127, 153, 691, 696, 891
Hpy188III TCNNGA 1 cut(s) 591
HpyAV CCTTC 2 cut(s) 68, 725
HpyCH4III ACNGT 2 cut(s) 306, 352
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 9 cut(s) 311, 389, 401, 419, 482, 569, 602, 646, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 38, 266
HpyF3I CTNAG 6 cut(s) 72, 174, 261, 695, 762, 839
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 2 cut(s) 98, 315
Kzo9I GATC 5 cut(s) 133, 448, 492, 691, 854
LmnI GCTCC 4 cut(s) 226, 524, 758, 896
LweI GCATC 3 cut(s) 491, 589, 655
MaeI CTAG 2 cut(s) 288, 755
MaeII ACGT 1 cut(s) 870
MalI GATC 5 cut(s) 135, 450, 494, 693, 856
MboI GATC 5 cut(s) 133, 448, 492, 691, 854
MboII GAAGA 2 cut(s) 60, 172
MfeI CAATTG 1 cut(s) 374
MluCI AATT 2 cut(s) 374, 671
MlyI GAGTC 2 cut(s) 83, 113
MmeI TCCRAC 2 cut(s) 304, 502
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 342, 383, 411
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 2 cut(s) 792, 827
MspR9I CCNGG 1 cut(s) 876
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 3 cut(s) 11, 38, 266
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 5 cut(s) 133, 448, 492, 691, 854
NlaIII CATG 2 cut(s) 98, 315
NlaIV GGNNCC 3 cut(s) 279, 362, 744
NspV TTCGAA 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 122, 587, 607
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 2 cut(s) 82, 112
PpsI GAGTC 2 cut(s) 82, 112
Psp6I CCWGG 1 cut(s) 874
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 3 cut(s) 279, 362, 744
PspPI GGNCC 2 cut(s) 242, 277
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 342, 383, 411
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 5 cut(s) 133, 448, 492, 691, 854
Sau96I GGNCC 2 cut(s) 242, 277
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 2 cut(s) 83, 113
ScrFI CCNGG 1 cut(s) 876
SfaNI GCATC 3 cut(s) 491, 589, 655
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 2 cut(s) 242, 277
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 3 cut(s) 101, 158, 331
SmoI CTYRAG 3 cut(s) 101, 158, 331
Sse9I AATT 2 cut(s) 374, 671
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 2 cut(s) 30, 440
SspI AATATT 1 cut(s) 803
SspMI CTAG 2 cut(s) 288, 755
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 1 cut(s) 874
StyI CCWWGG 3 cut(s) 253, 365, 541
TaaI ACNGT 2 cut(s) 306, 352
TaiI ACGT 1 cut(s) 873
TaqI TCGA 1 cut(s) 610
TasI AATT 2 cut(s) 374, 671
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 122, 587, 607
Tru1I TTAA 3 cut(s) 342, 383, 411
Tru9I TTAA 3 cut(s) 342, 383, 411
TscAI CASTG 4 cut(s) 357, 609, 669, 781
TspDTI ATGAA 3 cut(s) 653, 744, 879
TspRI CASTG 4 cut(s) 357, 609, 669, 781
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 242, 277
XapI RAATTY 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 2 cut(s) 288, 755
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.