RLG00000007324

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003995
Physical Location & Seq
Forward (+)
15845498 .. 15846882
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007324

Sequence Viewer

Length: 945 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTATTCTTGCTTTCCTCATCCTCCTTCTTCCACATTCTTACTCTTCTGAGTCCATTTTGAGTGATGAGTATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCTGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTCCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCGTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAAAAGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCACCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCGGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGCTGTATAAGCATGCTCCAGTGAAAGTGCATCCATATGATATAACAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGACAAGCAGGTTTGAAAGATGAAGGCCTTTTGGTTCCAAAATATAAAGGAGCTGAGGGAAAAATCAGAGGCAATGTTCTTGCCGGAGACAGATATTCAGTTGCATATGACAGGACACCAGAGGAGATACTGAGGATTGTATATGGATCAGGTGATGAACATGTCCCTGGGGGTTTCTATCCGAAAGGAGCTGATGGTCGTATTGCCAAATCTCATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

315

Amino Acids

34.41

Weight (kDa)

8.46

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 44 - 211 3.1e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 713
AciI CCGC 2 cut(s) 30, 575
AclWI GGATC 3 cut(s) 449, 493, 868
AcoI YGGCCR 1 cut(s) 672
AfaI GTAC 2 cut(s) 123, 170
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 3 cut(s) 442, 475, 730
AjnI CCWGG 1 cut(s) 880
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 6 cut(s) 179, 344, 471, 712, 767, 905
AluI AGCT 6 cut(s) 179, 344, 471, 712, 767, 905
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 3 cut(s) 449, 493, 868
AoxI GGCC 4 cut(s) 103, 374, 672, 739
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 248, 283
AsuHPI GGTGA 2 cut(s) 108, 878
AsuII TTCGAA 1 cut(s) 616
AvaII GGWCC 2 cut(s) 248, 283
BbvCI CCTCAGC 1 cut(s) 768
BccI CCATC 1 cut(s) 902
BciT130I CCWGG 1 cut(s) 882
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 713
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 2 cut(s) 248, 283
BmgT120I GGNCC 2 cut(s) 248, 283
BmiI GGNNCC 2 cut(s) 368, 750
BmrFI CCNGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 497, 595, 661
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 616
BpuEI CTTGAG 3 cut(s) 128, 185, 358
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 5 cut(s) 259, 371, 547, 880, 881
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 3 cut(s) 285, 523, 641
Bse3DI GCAATG 2 cut(s) 620, 793
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 5 cut(s) 259, 371, 547, 880, 881
BseGI GGATG 4 cut(s) 48, 304, 488, 652
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 2 cut(s) 620, 793
BseMII CTCAG 5 cut(s) 69, 171, 692, 759, 836
BseNI ACTGG 3 cut(s) 285, 523, 641
BseRI GAGGAG 1 cut(s) 851
BseYI CCCAGC 1 cut(s) 712
BshFI GGCC 4 cut(s) 105, 376, 674, 741
BsiSI CCGG 1 cut(s) 798
BslFI GGGAC 2 cut(s) 729, 863
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 729, 863
BsnI GGCC 4 cut(s) 105, 376, 674, 741
Bsp119I TTCGAA 1 cut(s) 616
Bsp143I GATC 5 cut(s) 139, 454, 498, 697, 860
BspACI CCGC 2 cut(s) 30, 575
BspANI GGCC 4 cut(s) 105, 376, 674, 741
BspCNI CTCAG 5 cut(s) 70, 172, 693, 760, 837
BspLI GGNNCC 2 cut(s) 368, 750
BspMI ACCTGC 1 cut(s) 713
BspPI GGATC 3 cut(s) 449, 493, 868
BspT104I TTCGAA 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 620, 793
BsrI ACTGG 3 cut(s) 285, 523, 641
BssECI CCNNGG 5 cut(s) 259, 371, 547, 880, 881
BssMI GATC 5 cut(s) 139, 454, 498, 697, 860
BssT1I CCWWGG 3 cut(s) 259, 371, 547
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 5 cut(s) 287, 312, 358, 381, 670
Bst6I CTCTTC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 6 cut(s) 78, 180, 267, 701, 768, 845
BstF5I GGATG 4 cut(s) 48, 304, 488, 652
BstKTI GATC 5 cut(s) 142, 457, 501, 700, 863
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 5 cut(s) 139, 454, 498, 697, 860
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 272, 631
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 2 cut(s) 638, 878
BstSCI CCNGG 1 cut(s) 880
BsuRI GGCC 4 cut(s) 105, 376, 674, 741
BtsCI GGATG 4 cut(s) 48, 304, 488, 652
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 4 cut(s) 363, 615, 648, 675
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 248, 283
Csp6I GTAC 2 cut(s) 122, 169
CviAII CATG 3 cut(s) 318, 635, 875
CviQI GTAC 2 cut(s) 122, 169
DdeI CTNAG 6 cut(s) 78, 180, 267, 701, 768, 845
DpnI GATC 5 cut(s) 141, 456, 500, 699, 862
DpnII GATC 5 cut(s) 139, 454, 498, 697, 860
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 3 cut(s) 259, 371, 547
Eco147I AGGCCT 1 cut(s) 741
Eco47I GGWCC 2 cut(s) 248, 283
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 3 cut(s) 259, 371, 547
ErhI CCWWGG 3 cut(s) 259, 371, 547
FaeI CATG 3 cut(s) 321, 638, 878
FaqI GGGAC 2 cut(s) 729, 863
FatI CATG 3 cut(s) 317, 634, 874
FauI CCCGC 1 cut(s) 568
FauNDI CATATG 2 cut(s) 658, 820
FokI GGATG 4 cut(s) 35, 311, 475, 639
FspBI CTAG 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 716
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 4 cut(s) 105, 376, 674, 741
HapII CCGG 1 cut(s) 798
Hin1II CATG 3 cut(s) 321, 638, 878
HinfI GANTC 5 cut(s) 80, 110, 128, 593, 613
HpaII CCGG 1 cut(s) 798
HphI GGTGA 2 cut(s) 108, 878
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 7 cut(s) 79, 133, 159, 697, 702, 782, 897
Hpy188III TCNNGA 1 cut(s) 597
Hpy8I GTNNAC 1 cut(s) 681
HpyAV CCTTC 2 cut(s) 65, 731
HpyCH4III ACNGT 5 cut(s) 287, 312, 358, 381, 670
HpyCH4V TGCA 8 cut(s) 317, 395, 407, 425, 488, 608, 652, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 272, 631
HpyF3I CTNAG 6 cut(s) 78, 180, 267, 701, 768, 845
Hsp92II CATG 3 cut(s) 321, 638, 878
Kzo9I GATC 5 cut(s) 139, 454, 498, 697, 860
LmnI GCTCC 5 cut(s) 232, 530, 643, 764, 902
LweI GCATC 3 cut(s) 497, 595, 661
MaeI CTAG 1 cut(s) 294
MalI GATC 5 cut(s) 141, 456, 500, 699, 862
MboI GATC 5 cut(s) 139, 454, 498, 697, 860
MboII GAAGA 3 cut(s) 50, 66, 178
MlyI GAGTC 2 cut(s) 89, 119
MmeI TCCRAC 3 cut(s) 310, 363, 508
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 3 cut(s) 348, 389, 417
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 1 cut(s) 798
MspR9I CCNGG 1 cut(s) 882
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 272, 631
NdeI CATATG 2 cut(s) 658, 820
NdeII GATC 5 cut(s) 139, 454, 498, 697, 860
NlaIII CATG 3 cut(s) 321, 638, 878
NlaIV GGNNCC 2 cut(s) 368, 750
NmeAIII GCCGAG 1 cut(s) 700
NspI RCATGY 2 cut(s) 638, 878
NspV TTCGAA 1 cut(s) 616
PaeI GCATGC 1 cut(s) 638
PasI CCCWGGG 1 cut(s) 881
PceI AGGCCT 1 cut(s) 741
PciI ACATGT 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 3 cut(s) 128, 593, 613
PleI GAGTC 2 cut(s) 88, 118
PpsI GAGTC 2 cut(s) 88, 118
PscI ACATGT 1 cut(s) 874
Psp6I CCWGG 1 cut(s) 880
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 2 cut(s) 368, 750
PspPI GGNCC 2 cut(s) 248, 283
PsrI GAACNNNNNNTAC 2 cut(s) 152, 184
RsaI GTAC 2 cut(s) 123, 170
RsaNI GTAC 2 cut(s) 122, 169
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 3 cut(s) 348, 389, 417
Sau3AI GATC 5 cut(s) 139, 454, 498, 697, 860
Sau96I GGNCC 2 cut(s) 248, 283
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 89, 119
ScrFI CCNGG 1 cut(s) 882
SfaNI GCATC 3 cut(s) 497, 595, 661
SfuI TTCGAA 1 cut(s) 616
SinI GGWCC 2 cut(s) 248, 283
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 107, 164, 337
SmoI CTYRAG 3 cut(s) 107, 164, 337
SphI GCATGC 1 cut(s) 638
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 2 cut(s) 30, 575
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 3 cut(s) 259, 371, 547
TaaI ACNGT 5 cut(s) 287, 312, 358, 381, 670
TaqI TCGA 1 cut(s) 616
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 3 cut(s) 128, 593, 613
Tru1I TTAA 3 cut(s) 348, 389, 417
Tru9I TTAA 3 cut(s) 348, 389, 417
TscAI CASTG 4 cut(s) 363, 615, 648, 675
TspDTI ATGAA 2 cut(s) 750, 885
TspRI CASTG 4 cut(s) 363, 615, 648, 675
VpaK11BI GGWCC 2 cut(s) 248, 283
XceI RCATGY 2 cut(s) 638, 878
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.