Rh4CG284000

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003995
Physical Location & Seq
Reverse (-)
54104222 .. 54105974
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG284000.1

Sequence Viewer

Length: 939 bp
ATGGCACATTTTGCTCATACCAGCACCACCGCTACTCTTGCTTTCCTCATCATCCTCCTTCTTTACTCTTCTGAGTCCATTTTGAGTGATGAGTATGGCCTTGAGTCCTCACCTGTACCAGATTCAGATGTTGATCTCTTGGAGTTTCCTCTGAACCTTGAGTACTTGGAAGCCGAGTTCTTCCTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTCGCTCCAAACTTGACATTGGGAGGTCCAAAACCCCTTGGTGCTAAGAAAGCCAAACTGGACCCTTTCACTAGGGATGTGATAGAACAGTTTGCATGGCAAGAAGTTGGACACTTGAGAGCTATTAAAAAGACAGTGAAAGGGTTCCCAAGGCCACAGTTGGATTTAAGTGCAAAATCATTTGCAGAAGTGTTTAATCTTGCATTTGGGCGTGTTTTGAAGCCGCCATTTGATCCTTATGCCAATAGCTTGAACTATCTCCTTGCATCCTATTTGATCCCTTATGTTGGTCTTACTGGTTATGTTGGAGCAAACCCAAAACTCCAAGGCTCTACTTCCAAAAGGCTTGTTGCAGGTCTTTTGGGTGTGGAATCAGGACAAGATGCAGTGATTCGAACATTGTTGTATGAGCAGGCTCTGATGAAAGTGCATCCATATGATATATCAGTGGCCGAGTTCACAAATCGGCTTTCTGATCTGAGGAACAAGCTGGGAAAAGCAGGTTTGAAAGATGAAGGCCTTTTGGTTCCAAAATATCTAGGAGCTGAGGGAAAAATCAGTGGCAATGTTCTTGCCGGAGACGAATATTCAATTGCATATGCCAGGACACCGGAGGAGATACTGAGGATTGTATATGGATCAGGTGATGAACACGTCCCTGGGGGTTTCTATCCAAAAGGAGCTGATGGTCGTATTGCCAAATCTTATCTACAAAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

312

Amino Acids

34.04

Weight (kDa)

5.66

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 1.2e-38 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 560, 707
AciI CCGC 2 cut(s) 30, 440
AclWI GGATC 3 cut(s) 443, 487, 862
AcoI YGGCCR 1 cut(s) 666
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 4 cut(s) 436, 469, 724, 807
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 2 cut(s) 818, 874
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 5 cut(s) 338, 465, 706, 761, 899
AluI AGCT 5 cut(s) 338, 465, 706, 761, 899
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 443, 487, 862
AlwNI CAGNNNCTG 1 cut(s) 634
AoxI GGCC 4 cut(s) 97, 368, 666, 733
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 242, 277
AsuHPI GGTGA 2 cut(s) 102, 872
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 242, 277
BbvCI CCTCAGC 1 cut(s) 762
BccI CCATC 1 cut(s) 896
BciT130I CCWGG 2 cut(s) 820, 876
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 2 cut(s) 288, 755
BfuAI ACCTGC 2 cut(s) 560, 707
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 820, 876
Bme18I GGWCC 2 cut(s) 242, 277
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 242, 277
BmiI GGNNCC 3 cut(s) 279, 362, 744
BmrFI CCNGG 2 cut(s) 820, 876
BmsI GCATC 3 cut(s) 491, 589, 655
Bpu10I CCTNAGC 1 cut(s) 762
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 122, 179, 352
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 279, 517
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 820, 876
BseDI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BseGI GGATG 4 cut(s) 51, 298, 482, 646
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 4 cut(s) 63, 686, 753, 830
BseNI ACTGG 2 cut(s) 279, 517
BseRI GAGGAG 1 cut(s) 845
BseYI CCCAGC 1 cut(s) 706
BshFI GGCC 4 cut(s) 99, 370, 668, 735
BsiSI CCGG 2 cut(s) 792, 827
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 4 cut(s) 99, 370, 668, 735
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 5 cut(s) 133, 448, 492, 691, 854
BspACI CCGC 2 cut(s) 30, 440
BspANI GGCC 4 cut(s) 99, 370, 668, 735
BspCNI CTCAG 4 cut(s) 64, 687, 754, 831
BspLI GGNNCC 3 cut(s) 279, 362, 744
BspMI ACCTGC 2 cut(s) 560, 707
BspPI GGATC 3 cut(s) 443, 487, 862
BspT104I TTCGAA 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 2 cut(s) 279, 517
BssECI CCNNGG 5 cut(s) 253, 365, 541, 874, 875
BssMI GATC 5 cut(s) 133, 448, 492, 691, 854
BssT1I CCWWGG 3 cut(s) 253, 365, 541
Bst2UI CCWGG 2 cut(s) 820, 876
Bst4CI ACNGT 3 cut(s) 306, 352, 375
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 5 cut(s) 72, 261, 695, 762, 839
BstF5I GGATG 4 cut(s) 51, 298, 482, 646
BstKTI GATC 5 cut(s) 136, 451, 495, 694, 857
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 5 cut(s) 133, 448, 492, 691, 854
BstMWI GCNNNNNNNGC 3 cut(s) 11, 38, 266
BstNI CCWGG 2 cut(s) 820, 876
BstSCI CCNGG 2 cut(s) 818, 874
BsuRI GGCC 4 cut(s) 99, 370, 668, 735
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 4 cut(s) 51, 298, 482, 646
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 4 cut(s) 357, 609, 669, 781
BveI ACCTGC 2 cut(s) 560, 707
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 242, 277
Csp6I GTAC 2 cut(s) 116, 163
CviAII CATG 1 cut(s) 312
CviQI GTAC 2 cut(s) 116, 163
DdeI CTNAG 5 cut(s) 72, 261, 695, 762, 839
DpnI GATC 5 cut(s) 135, 450, 494, 693, 856
DpnII GATC 5 cut(s) 133, 448, 492, 691, 854
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 253, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 242, 277
EcoRII CCWGG 2 cut(s) 818, 874
EcoT14I CCWWGG 3 cut(s) 253, 365, 541
ErhI CCWWGG 3 cut(s) 253, 365, 541
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 1 cut(s) 315
FaqI GGGAC 1 cut(s) 857
FatI CATG 1 cut(s) 311
FauNDI CATATG 2 cut(s) 652, 814
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 4 cut(s) 38, 305, 469, 633
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 288, 755
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 710
HaeIII GGCC 4 cut(s) 99, 370, 668, 735
HapII CCGG 2 cut(s) 792, 827
Hin1II CATG 1 cut(s) 315
HinfI GANTC 5 cut(s) 74, 104, 122, 587, 607
HpaII CCGG 2 cut(s) 792, 827
HphI GGTGA 2 cut(s) 102, 872
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 6 cut(s) 73, 127, 153, 636, 691, 696
Hpy188III TCNNGA 1 cut(s) 591
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 68, 725
HpyCH4III ACNGT 3 cut(s) 306, 352, 375
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 9 cut(s) 311, 389, 401, 419, 482, 569, 602, 646, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 38, 266
HpyF3I CTNAG 5 cut(s) 72, 261, 695, 762, 839
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 1 cut(s) 315
Kzo9I GATC 5 cut(s) 133, 448, 492, 691, 854
LmnI GCTCC 4 cut(s) 226, 524, 758, 896
LweI GCATC 3 cut(s) 491, 589, 655
MaeI CTAG 2 cut(s) 288, 755
MaeII ACGT 1 cut(s) 870
MalI GATC 5 cut(s) 135, 450, 494, 693, 856
MboI GATC 5 cut(s) 133, 448, 492, 691, 854
MboII GAAGA 2 cut(s) 60, 172
MfeI CAATTG 1 cut(s) 807
MluCI AATT 1 cut(s) 807
MlyI GAGTC 2 cut(s) 83, 113
MmeI TCCRAC 3 cut(s) 304, 357, 502
MnlI CCTC 9 cut(s) 56, 65, 118, 159, 233, 690, 757, 823, 834
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 342, 383, 411
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 2 cut(s) 792, 827
MspR9I CCNGG 2 cut(s) 820, 876
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 2 cut(s) 820, 876
MwoI GCNNNNNNNGC 3 cut(s) 11, 38, 266
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 5 cut(s) 133, 448, 492, 691, 854
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 3 cut(s) 279, 362, 744
NmeAIII GCCGAG 2 cut(s) 199, 694
NspV TTCGAA 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 122, 587, 607
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 2 cut(s) 82, 112
PpsI GAGTC 2 cut(s) 82, 112
Psp6I CCWGG 2 cut(s) 818, 874
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 2 cut(s) 818, 874
PspN4I GGNNCC 3 cut(s) 279, 362, 744
PspPI GGNCC 2 cut(s) 242, 277
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PstNI CAGNNNCTG 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 342, 383, 411
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 5 cut(s) 133, 448, 492, 691, 854
Sau96I GGNCC 2 cut(s) 242, 277
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 2 cut(s) 83, 113
ScrFI CCNGG 2 cut(s) 820, 876
SfaNI GCATC 3 cut(s) 491, 589, 655
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 2 cut(s) 242, 277
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 3 cut(s) 101, 158, 331
SmoI CTYRAG 3 cut(s) 101, 158, 331
Sse9I AATT 1 cut(s) 807
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 2 cut(s) 30, 440
SspI AATATT 1 cut(s) 803
SspMI CTAG 2 cut(s) 288, 755
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 2 cut(s) 818, 874
StyI CCWWGG 3 cut(s) 253, 365, 541
TaaI ACNGT 3 cut(s) 306, 352, 375
TaiI ACGT 1 cut(s) 873
TaqI TCGA 1 cut(s) 610
TasI AATT 1 cut(s) 807
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 122, 587, 607
Tru1I TTAA 3 cut(s) 342, 383, 411
Tru9I TTAA 3 cut(s) 342, 383, 411
TscAI CASTG 4 cut(s) 357, 609, 669, 781
TspDTI ATGAA 3 cut(s) 653, 744, 879
TspRI CASTG 4 cut(s) 357, 609, 669, 781
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 242, 277
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 2 cut(s) 288, 755
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.