Prupe.1G282100_v2.0.a1

Protein GDAP2 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
28494060 .. 28499115
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282100.1

Sequence Viewer

Length: 1689 bp
ATGTACCGGACTGTGGCCACGGCCACCACTGCAACCCGGGGTGGATCTCCAACTGATAGTGGGGATTGTGTTGTGAGTTTGGATCAAGTTCCTCGATGGAGCAATGCAGATCATCGTTCTTCCTTGGAATATGACAATGAAGATCCTTCGTTTTCAAATAAATATTTTCCTGACCCTTTAACTTCTCAATCTGGAGGGGAGAGCAGTAGCAGTTGGATAGTCTCAAGATTTCCCGTTGACCATGAAATTAATTCAAAGATATATCTGTGGAGAGGGAACCCATGGAATCTGGAAGTTGATGCTGTCGTGAATTCTACAAATGAGAACATGGATGAAGCACATTGCAGCCCTGGTTTGCATGCTGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCAGCACTGGGTGGATGTAGAACAGGAATGGCAAAGGTTACTAAAGCGTACGACCTCCCAGCTAGGAGAGTTATCCATACTGTTGGTCCTAAGTATGCAGTGAAATACCATACTGCTGCAGAAAATGCTCTGAGCCACTGCTATCGTTCTTGCCTTGAACTTCTCATTGAAAATGGACTGCAAAGCATTGCAATGGGCTGTATATATACAGAGGCTAAGAACTACCCTCGGGAGCCAGCTGCCCATGTAGCAATAAGGACTGTGCGGCGATTTCTGGAGAAGCAGAAAGATAAAATCGCAGCTGTTGTTTTTTGCACCACCACATCAACTGATACAGAGATATACAAAAGATTGCTTCCGCTTTACTTTCCCCGAGACAAACTTGAAGAGGAGGTTGCCATGTCGAAGCTTCCTGCAGATGTAGGTGATGAAAATGGTGAGACAATTATAGATGAGCGCAAAATCAGAATAAAGCCTTTGCCCAAGAAGAATATTCCAAAGCCTCCTAAGGCTCCAGTTGATCTTCCTGTGAGTGATGTCGGCTTGGTAAGAAGGAATTCATCATATTTGGATTCATTTCTGGATCCTGCTTTCATGTCCTTAATAAAAGATCCAGATCAGAGACGCAAGGAGCAATGGGAGAAAACTGCTCAAGCACAAGGTGGATGGAATTGTGCTAAAATGCTTGGGTTTGGTGACCTTGGTGGACCTCCATTGTCTGCTGCTGAAGAATACTCACTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTTCATCTTTCTGAAATTGCAGAAATGAAAATTGTTTACCGAGGTGGGGTTGACAGCGAGGGTCGTCCTGTAATGGTAGTTGTGGGGGCACATTTTCTTTTACGATGTCTTGATCTAGAACGATTTATACACTATGTTGTTAAGGAGTTTGAACCTATAATACAGAAGCCTTATACTATTGTATACTTCCATTCTGCAGCATCTTTACAGCTTCAGCCAGACTTGGGGTGGATGAGAAGAGTACAACAAATACTTGGTCGTAAACACCAACGTAATCTGCATGCAATATATGTCCTTCACCCAACTTTTGGACTGAAGGCTGCAATATTTGCTCTGCAATTGTTTGTGGACAATTTGGTCTGGAAGAAAGTGGTATATGTAGATAGATTACTGCAGCTCTTCAGATATGTTCCTCGTGAGCAGTTGACCATCCCTGACTTTGTGTTCCAGCACGATTTAGAAGTCAATGGTGGGAAGGGTCTTATTGTGGACCCAAGAACAAAGTATGTGTATCATCGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

63.26

Weight (kDa)

8.18

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1520
AccB7I CCANNNNNTGG 1 cut(s) 1472
AccI GTMKAC 1 cut(s) 1347
AciI CCGC 2 cut(s) 658, 752
AclWI GGATC 6 cut(s) 52, 90, 137, 971, 984, 998
AcoI YGGCCR 2 cut(s) 15, 21
AcsI RAATTY 3 cut(s) 310, 949, 1159
AcuI CTGAAG 4 cut(s) 1140, 1361, 1499, 1549
AdeI CACNNNGTG 2 cut(s) 404, 1055
AfaI GTAC 3 cut(s) 5, 443, 1407
AfiI CCNNNNNNNGG 4 cut(s) 13, 1210, 1388, 1472
AgsI TTSAA 7 cut(s) 156, 255, 551, 563, 779, 1140, 1316
AjnI CCWGG 2 cut(s) 349, 373
AluBI AGCT 7 cut(s) 368, 455, 632, 695, 802, 1375, 1561
AluI AGCT 7 cut(s) 368, 455, 632, 695, 802, 1375, 1561
Alw26I GTCTC 4 cut(s) 226, 762, 827, 1009
AlwI GGATC 6 cut(s) 52, 90, 137, 971, 984, 998
Ama87I CYCGRG 3 cut(s) 36, 621, 765
AoxI GGCC 2 cut(s) 15, 21
ApoI RAATTY 3 cut(s) 310, 949, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 1405, 1437
AseI ATTAAT 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 949
AspLEI GCGC 1 cut(s) 852
AspS9I GGNCC 4 cut(s) 371, 479, 1100, 1654
AsuC2I CCSGG 2 cut(s) 37, 38
AsuHPI GGTGA 4 cut(s) 830, 842, 1100, 1454
AvaI CYCGRG 3 cut(s) 36, 621, 765
AvaII GGWCC 4 cut(s) 371, 479, 1100, 1654
AxyI CCTNAGG 1 cut(s) 900
BaeGI GKGCMC 1 cut(s) 1255
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 976
BauI CACGAG 1 cut(s) 1578
BccI CCATC 3 cut(s) 90, 1053, 1601
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 351, 375
BcnI CCSGG 2 cut(s) 37, 38
BcoDI GTCTC 4 cut(s) 226, 762, 827, 1009
BfaI CTAG 2 cut(s) 456, 1280
BfmI CTRYAG 5 cut(s) 363, 510, 807, 1359, 1556
Bme1390I CCNGG 4 cut(s) 37, 38, 351, 375
Bme18I GGWCC 4 cut(s) 371, 479, 1100, 1654
BmeT110I CYCGRG 3 cut(s) 36, 621, 765
BmgT120I GGNCC 4 cut(s) 371, 479, 1100, 1654
BmiI GGNNCC 5 cut(s) 278, 627, 906, 978, 1656
BmrFI CCNGG 4 cut(s) 37, 38, 351, 375
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 289, 1373
BmuI ACTGGG 1 cut(s) 410
BpmI CTGGAG 3 cut(s) 213, 689, 891
BpuEI CTTGAG 2 cut(s) 208, 1029
BpuMI CCSGG 2 cut(s) 37, 38
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 9 cut(s) 18, 36, 37, 123, 281, 349, 620, 1093, 1204
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 1210, 1388, 1472
Bse1I ACTGG 2 cut(s) 405, 908
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 5 cut(s) 109, 340, 579, 591, 1034
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 2 cut(s) 351, 375
BseDI CCNNGG 9 cut(s) 18, 36, 37, 123, 281, 349, 620, 1093, 1204
BseGI GGATG 5 cut(s) 337, 413, 1064, 1401, 1593
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 4 cut(s) 13, 1210, 1388, 1472
BseMI GCAATG 5 cut(s) 109, 340, 579, 591, 1034
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 405, 908
BseRI GAGGAG 1 cut(s) 797
BseSI GKGCMC 1 cut(s) 1255
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 2 cut(s) 17, 23
BsiHKCI CYCGRG 3 cut(s) 36, 621, 765
BsiSI CCGG 2 cut(s) 7, 37
BsiWI CGTACG 1 cut(s) 441
BslI CCNNNNNNNGG 4 cut(s) 13, 1210, 1388, 1472
BsmAI GTCTC 4 cut(s) 226, 762, 827, 1009
BsmBI CGTCTC 1 cut(s) 1009
BsnI GGCC 2 cut(s) 17, 23
BsoBI CYCGRG 3 cut(s) 36, 621, 765
Bsp1286I GDGCHC 1 cut(s) 1255
Bsp143I GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 658, 752
BspANI GGCC 2 cut(s) 17, 23
BspCNI CTCAG 1 cut(s) 516
BspLI GGNNCC 5 cut(s) 278, 627, 906, 978, 1656
BspMAI CTGCAG 5 cut(s) 367, 514, 811, 1363, 1560
BspPI GGATC 6 cut(s) 52, 90, 137, 971, 984, 998
BspQI GCTCTTC 1 cut(s) 1568
BsrDI GCAATG 5 cut(s) 109, 340, 579, 591, 1034
BsrI ACTGG 2 cut(s) 405, 908
BssECI CCNNGG 9 cut(s) 18, 36, 37, 123, 281, 349, 620, 1093, 1204
BssMI GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
BssNAI GTATAC 1 cut(s) 1348
BssSI CACGAG 1 cut(s) 1578
BssT1I CCWWGG 3 cut(s) 123, 281, 1093
Bst1107I GTATAC 1 cut(s) 1348
Bst2BI CACGAG 1 cut(s) 1578
Bst2UI CCWGG 2 cut(s) 351, 375
Bst4CI ACNGT 3 cut(s) 13, 475, 655
Bst6I CTCTTC 4 cut(s) 774, 1170, 1396, 1568
BstAPI GCANNNNNTGC 2 cut(s) 518, 1493
BstC8I GCNNGC 3 cut(s) 360, 630, 1446
BstDEI CTNAG 4 cut(s) 483, 524, 609, 900
BstDSI CCRYGG 2 cut(s) 18, 281
BstEII GGTNACC 1 cut(s) 1088
BstF5I GGATG 5 cut(s) 337, 413, 1064, 1401, 1593
BstHHI GCGC 1 cut(s) 852
BstKTI GATC 9 cut(s) 47, 85, 112, 145, 916, 979, 1006, 1012, 1279
BstMAI GTCTC 4 cut(s) 226, 762, 827, 1009
BstMBI GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
BstMWI GCNNNNNNNGC 4 cut(s) 29, 518, 641, 1493
BstNI CCWGG 2 cut(s) 351, 375
BstNSI RCATGY 2 cut(s) 362, 1448
BstPI GGTNACC 1 cut(s) 1088
BstSCI CCNGG 4 cut(s) 35, 36, 349, 373
BstSFI CTRYAG 5 cut(s) 363, 510, 807, 1359, 1556
BstSLI GKGCMC 1 cut(s) 1255
BstX2I RGATCY 4 cut(s) 44, 142, 976, 1003
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 4 cut(s) 44, 142, 976, 1003
BstZ17I GTATAC 1 cut(s) 1348
Bsu36I CCTNAGG 1 cut(s) 900
BsuRI GGCC 2 cut(s) 17, 23
BtgI CCRYGG 2 cut(s) 18, 281
BtsCI GGATG 5 cut(s) 337, 413, 1064, 1401, 1593
BtsI GCAGTG 3 cut(s) 27, 498, 529
BtsIMutI CAGTG 4 cut(s) 27, 398, 498, 529
Cac8I GCNNGC 3 cut(s) 360, 630, 1446
CfoI GCGC 1 cut(s) 852
Cfr13I GGNCC 4 cut(s) 371, 479, 1100, 1654
Cfr9I CCCGGG 1 cut(s) 36
CseI GACGC 1 cut(s) 1026
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 3 cut(s) 4, 442, 1406
CviAII CATG 8 cut(s) 242, 282, 328, 359, 638, 793, 988, 1445
CviQI GTAC 3 cut(s) 4, 442, 1406
DdeI CTNAG 4 cut(s) 483, 524, 609, 900
DpnI GATC 9 cut(s) 46, 84, 111, 144, 915, 978, 1005, 1011, 1278
DpnII GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
DraIII CACNNNGTG 2 cut(s) 404, 1055
DrdI GACNNNNNNGTC 1 cut(s) 1520
DseDI GACNNNNNNGTC 1 cut(s) 1520
EaeI YGGCCR 2 cut(s) 15, 21
Eam1104I CTCTTC 4 cut(s) 774, 1170, 1396, 1568
EarI CTCTTC 4 cut(s) 774, 1170, 1396, 1568
Eco130I CCWWGG 3 cut(s) 123, 281, 1093
Eco47I GGWCC 4 cut(s) 371, 479, 1100, 1654
Eco57I CTGAAG 4 cut(s) 1140, 1361, 1499, 1549
Eco81I CCTNAGG 1 cut(s) 900
Eco88I CYCGRG 3 cut(s) 36, 621, 765
Eco91I GGTNACC 1 cut(s) 1088
EcoO65I GGTNACC 1 cut(s) 1088
EcoRI GAATTC 2 cut(s) 310, 949
EcoRII CCWGG 2 cut(s) 349, 373
EcoT14I CCWWGG 3 cut(s) 123, 281, 1093
ErhI CCWWGG 3 cut(s) 123, 281, 1093
Esp3I CGTCTC 1 cut(s) 1009
FaeI CATG 8 cut(s) 245, 285, 331, 362, 641, 796, 991, 1448
FatI CATG 8 cut(s) 241, 281, 327, 358, 637, 792, 987, 1444
FblI GTMKAC 1 cut(s) 1347
FokI GGATG 5 cut(s) 344, 420, 1071, 1408, 1580
FspBI CTAG 2 cut(s) 456, 1280
GlaI GCGC 1 cut(s) 851
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 3 cut(s) 213, 689, 891
HaeIII GGCC 2 cut(s) 17, 23
HapII CCGG 2 cut(s) 7, 37
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 1 cut(s) 852
Hin1II CATG 8 cut(s) 245, 285, 331, 362, 641, 796, 991, 1448
Hin6I GCGC 1 cut(s) 850
HinP1I GCGC 1 cut(s) 850
HincII GTYRAC 3 cut(s) 238, 1216, 1590
HindII GTYRAC 3 cut(s) 238, 1216, 1590
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 2 cut(s) 286, 965
HpaII CCGG 2 cut(s) 7, 37
HphI GGTGA 4 cut(s) 830, 842, 1100, 1454
Hpy166II GTNNAC 9 cut(s) 238, 1100, 1201, 1216, 1348, 1427, 1513, 1590, 1654
Hpy188I TCNGA 5 cut(s) 525, 860, 1014, 1177, 1568
Hpy8I GTNNAC 9 cut(s) 238, 1100, 1201, 1216, 1348, 1427, 1513, 1590, 1654
HpyAV CCTTC 5 cut(s) 156, 939, 1469, 1474, 1633
HpyCH4III ACNGT 3 cut(s) 13, 475, 655
HpyCH4IV ACGT 1 cut(s) 1435
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 518, 641, 1493
HpyF3I CTNAG 4 cut(s) 483, 524, 609, 900
HpySE526I ACGT 1 cut(s) 1435
Hsp92II CATG 8 cut(s) 245, 285, 331, 362, 641, 796, 991, 1448
HspAI GCGC 1 cut(s) 850
Kzo9I GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
LguI GCTCTTC 1 cut(s) 1568
LmnI GCTCC 4 cut(s) 99, 625, 910, 1024
LweI GCATC 2 cut(s) 289, 1373
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 2 cut(s) 456, 1280
MaeII ACGT 1 cut(s) 1435
MaeIII GTNAC 2 cut(s) 430, 1088
MalI GATC 9 cut(s) 46, 84, 111, 144, 915, 978, 1005, 1011, 1278
MboI GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
MfeI CAATTG 1 cut(s) 1502
MflI RGATCY 4 cut(s) 44, 142, 976, 1003
MhlI GDGCHC 1 cut(s) 1255
MlsI TGGCCA 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 74, 194
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 949
MscI TGGCCA 1 cut(s) 17
MseI TTAA 4 cut(s) 179, 249, 995, 1305
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 3 cut(s) 368, 632, 695
MspI CCGG 2 cut(s) 7, 37
MspR9I CCNGG 4 cut(s) 37, 38, 351, 375
MunI CAATTG 1 cut(s) 1502
MvaI CCWGG 2 cut(s) 351, 375
MwoI GCNNNNNNNGC 4 cut(s) 29, 518, 641, 1493
NciI CCSGG 2 cut(s) 37, 38
NcoI CCATGG 1 cut(s) 281
NdeII GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
NlaIII CATG 8 cut(s) 245, 285, 331, 362, 641, 796, 991, 1448
NlaIV GGNNCC 5 cut(s) 278, 627, 906, 978, 1656
NmuCI GTSAC 1 cut(s) 1088
NspI RCATGY 2 cut(s) 362, 1448
PaeI GCATGC 2 cut(s) 362, 1448
PciSI GCTCTTC 1 cut(s) 1568
PdmI GAANNNNTTC 1 cut(s) 949
PfeI GAWTC 2 cut(s) 286, 965
Pfl23II CGTACG 1 cut(s) 441
PflFI GACNNNGTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 1472
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 349, 373
PspEI GGTNACC 1 cut(s) 1088
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 2 cut(s) 349, 373
PspLI CGTACG 1 cut(s) 441
PspN4I GGNNCC 5 cut(s) 278, 627, 906, 978, 1656
PspPI GGNCC 4 cut(s) 371, 479, 1100, 1654
PsrI GAACNNNNNNTAC 4 cut(s) 1275, 1307, 1308, 1340
PstI CTGCAG 5 cut(s) 367, 514, 811, 1363, 1560
PsuI RGATCY 4 cut(s) 44, 142, 976, 1003
PsyI GACNNNGTC 1 cut(s) 375
PvuII CAGCTG 3 cut(s) 368, 632, 695
RsaI GTAC 3 cut(s) 5, 443, 1407
RsaNI GTAC 3 cut(s) 4, 442, 1406
RseI CAYNNNNRTG 1 cut(s) 584
SapI GCTCTTC 1 cut(s) 1568
SaqAI TTAA 4 cut(s) 179, 249, 995, 1305
Sau3AI GATC 9 cut(s) 44, 82, 109, 142, 913, 976, 1003, 1009, 1276
Sau96I GGNCC 4 cut(s) 371, 479, 1100, 1654
ScrFI CCNGG 4 cut(s) 37, 38, 351, 375
SduI GDGCHC 1 cut(s) 1255
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 2 cut(s) 289, 1373
SfcI CTRYAG 5 cut(s) 363, 510, 807, 1359, 1556
SinI GGWCC 4 cut(s) 371, 479, 1100, 1654
SmaI CCCGGG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 223, 1044
SmoI CTYRAG 2 cut(s) 223, 1044
SphI GCATGC 2 cut(s) 362, 1448
SsiI CCGC 2 cut(s) 658, 752
SspI AATATT 3 cut(s) 164, 886, 1491
SspMI CTAG 2 cut(s) 456, 1280
StyD4I CCNGG 4 cut(s) 35, 36, 349, 373
StyI CCWWGG 3 cut(s) 123, 281, 1093
TaaI ACNGT 3 cut(s) 13, 475, 655
TaiI ACGT 1 cut(s) 1438
TaqI TCGA 3 cut(s) 94, 797, 1681
TatI WGTACW 1 cut(s) 1405
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 2 cut(s) 286, 965
Tru1I TTAA 4 cut(s) 179, 249, 995, 1305
Tru9I TTAA 4 cut(s) 179, 249, 995, 1305
TscAI CASTG 4 cut(s) 34, 405, 498, 536
TseFI GTSAC 1 cut(s) 1088
Tsp45I GTSAC 1 cut(s) 1088
TspMI CCCGGG 1 cut(s) 36
TspRI CASTG 4 cut(s) 34, 405, 498, 536
Tth111I GACNNNGTC 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 1472
VpaK11BI GGWCC 4 cut(s) 371, 479, 1100, 1654
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 3 cut(s) 310, 949, 1159
XbaI TCTAGA 1 cut(s) 1279
XceI RCATGY 2 cut(s) 362, 1448
XcmI CCANNNNNNNNNTGG 1 cut(s) 1389
XmaI CCCGGG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 1347
XmnI GAANNNNTTC 1 cut(s) 949
XspI CTAG 2 cut(s) 456, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.