Rh4AG364600

Protein GDAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006857
Physical Location & Seq
Forward (+)
67277783 .. 67283811
6029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG364600.1

Sequence Viewer

Length: 1362 bp
ATGGATGAAGCACACTGCAGCCCTGGCTTGCATGCTGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCCTCATTGGGTGGATGCCGAACAGGGATGGCAAAGGTTACTAAAGCATACGACCTTCCAGCTAGGAGGGTTATCCATACTGTTGGTCCCAAGTATGCTGTGAAGTACCATACTGCTGCAGAAAATGCTCTGAGCCACTGCTACCGTTCTTGTCTTGAACTCCTCATTGAAAATGGACTGCAAAGCATTGCAATGGGCTGTATATATACAGAGGCTAAGAACTATCCTCGTGAGCCAGCTGCCCATGTTGCTATAAGGACTGTGCGACGGTTTCTCGAGAAACAGAAGGATAAAATTGCAGCTGTTGTCTTTTGTACTACCACATCAACTGATACAGAAATTTACAAAAGATTGCTTCCGCTTTACTTTCCTCGAGATAGACTTGAAGAGGAGGTTGCCATGTCAAAACTTCCTGCAGATGTAGGCGATGAAAATGGTGAGACTATTATAGATGAACGCAAAATCAGAATAAAGCCTTTGCCCAAAAAAACTGCTCCAAAGCCTCCACAAGCTCCAGTTGACCTTCCTGTTAGTGATGTAGGCTTGGCACGGAGGAACTCATCACATTTGGATTCGTATCTGGATCCGGCCTTTATGTCTTTAATAAAAGATCCGGACCAGAGACGCAGGGAACAATGGGAAAAAACTGCTCAAGCCCAAAGTGGATGGAATTGTGCTAAAATGCTTGGCTTTGGTGATCTTGGTGGACCTCCATTGTCTGCTGCAGAAGAATACTCGCTTCATTCAAGATACCTTGCTAAAGCAAACTCTCTCAATCTTTCAGAAATTGCGGAAATGAAAATTGTCTACCGAGGTGGAGTTGACAGCGAGGGTCGTCCTGTAATGGTAGTTGTGGGGGCACATTTTCTGTTGCGATGTCTTGATCTAGAACGATTTGTGCATTATGTTGTCAAGGAGTTTGAGCCCATAATACAGAAGCCTTATACTGTTGTGTACTTCCACTCTGCTGCATCTCTACAGCTTCAACCAGACTTGGGGTGGATGAGAAGATTACAACAAATACTTGGTCGTAAGCACCAACGTAATCTGCATGCAATATATGTCCTTCACCCTACATTTGGACTTAAGGCGGCTGTTTTTGCTATGCAATTGTTTGTGGACAGTGTGGTCTGGAAGAAAGTGGTATATGTGGATAGATTACTGCAGCTCTTCAGATATGTTCCTCGTGAGCAGTTGACCATCCCCGACTTTGTGTTCCAGCATGATTTGGAAGTGAATGGTGGGAAGGGTCTTATTGTGGACCCAAGAACAAAGTACGTGTATCATCGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2 Macro

Protein Analysis

453

Amino Acids

51.09

Weight (kDa)

8.94

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Macro PF01661 6 - 106 1.1e-28 Macro domain
CRAL_TRIO_2 PF13716 300 - 431 4.5e-34 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1193
AccI GTMKAC 1 cut(s) 873
AccIII TCCGGA 1 cut(s) 679
AciI CCGC 3 cut(s) 425, 857, 1157
AclWI GGATC 3 cut(s) 644, 657, 671
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 1222
AfaI GTAC 4 cut(s) 173, 382, 1022, 1343
AfiI CCNNNNNNNGG 2 cut(s) 1061, 1145
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 1 cut(s) 1344
AgsI TTSAA 5 cut(s) 224, 236, 452, 813, 1052
AjnI CCWGG 2 cut(s) 22, 46
AluBI AGCT 7 cut(s) 41, 128, 305, 368, 578, 1048, 1234
AluI AGCT 7 cut(s) 41, 128, 305, 368, 578, 1048, 1234
Alw26I GTCTC 2 cut(s) 500, 682
AlwI GGATC 3 cut(s) 644, 657, 671
Ama87I CYCGRG 2 cut(s) 341, 438
Aor13HI TCCGGA 1 cut(s) 679
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 9 cut(s) 18, 35, 38, 182, 305, 365, 788, 1034, 1231
ApoI RAATTY 1 cut(s) 405
ArsI GACNNNNNNTTYG 2 cut(s) 1078, 1110
AspS9I GGNCC 5 cut(s) 44, 152, 682, 773, 1327
AsuHPI GGTGA 3 cut(s) 515, 773, 1127
AvaI CYCGRG 2 cut(s) 341, 438
AvaII GGWCC 5 cut(s) 44, 152, 682, 773, 1327
BaeGI GKGCMC 1 cut(s) 928
BamHI GGATCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 993
BauI CACGAG 2 cut(s) 294, 1251
BbvI GCAGC 9 cut(s) 22, 30, 50, 169, 292, 377, 775, 1021, 1243
BccI CCATC 3 cut(s) 88, 726, 1274
BciT130I CCWGG 2 cut(s) 24, 48
BcoDI GTCTC 2 cut(s) 500, 682
BfaI CTAG 2 cut(s) 129, 953
BfmI CTRYAG 7 cut(s) 16, 36, 183, 480, 789, 1043, 1229
BfrI CTTAAG 1 cut(s) 1151
Bme1390I CCNGG 2 cut(s) 24, 48
Bme18I GGWCC 5 cut(s) 44, 152, 682, 773, 1327
BmeT110I CYCGRG 2 cut(s) 341, 438
BmgT120I GGNCC 5 cut(s) 44, 152, 682, 773, 1327
BmiI GGNNCC 3 cut(s) 154, 651, 1329
BmrFI CCNGG 2 cut(s) 24, 48
BmsI GCATC 2 cut(s) 71, 1046
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 702
BsaAI YACGTR 1 cut(s) 1345
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 22, 877
BsaWI WCCGGW 1 cut(s) 679
Bsc4I CCNNNNNNNGG 2 cut(s) 1061, 1145
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 252, 264
Bse8I GATNNNNATC 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 679
BseBI CCWGG 2 cut(s) 24, 48
BseDI CCNNGG 2 cut(s) 22, 877
BseGI GGATG 6 cut(s) 10, 86, 99, 737, 1074, 1266
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 2 cut(s) 1061, 1145
BseMI GCAATG 2 cut(s) 252, 264
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 218, 470
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 9 cut(s) 22, 30, 50, 169, 292, 377, 775, 1021, 1243
BshFI GGCC 1 cut(s) 656
BsiHKCI CYCGRG 2 cut(s) 341, 438
BsiSI CCGG 2 cut(s) 653, 680
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 1061, 1145
BsmAI GTCTC 2 cut(s) 500, 682
BsmBI CGTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 2 cut(s) 341, 438
Bsp1286I GDGCHC 2 cut(s) 928, 993
Bsp13I TCCGGA 1 cut(s) 679
Bsp143I GATC 4 cut(s) 649, 676, 763, 949
BspACI CCGC 3 cut(s) 425, 857, 1157
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 679
BspLI GGNNCC 3 cut(s) 154, 651, 1329
BspMAI CTGCAG 6 cut(s) 20, 40, 187, 484, 793, 1233
BspPI GGATC 3 cut(s) 644, 657, 671
BspQI GCTCTTC 1 cut(s) 1241
BspTI CTTAAG 1 cut(s) 1151
BsrDI GCAATG 2 cut(s) 252, 264
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 2 cut(s) 22, 877
BssMI GATC 4 cut(s) 649, 676, 763, 949
BssSI CACGAG 2 cut(s) 294, 1251
Bst2BI CACGAG 2 cut(s) 294, 1251
Bst2UI CCWGG 2 cut(s) 24, 48
Bst4CI ACNGT 6 cut(s) 148, 212, 328, 336, 1015, 1190
Bst6I CTCTTC 2 cut(s) 447, 1241
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 1345
BstC8I GCNNGC 4 cut(s) 29, 33, 303, 1119
BstDEI CTNAG 2 cut(s) 197, 282
BstF5I GGATG 6 cut(s) 10, 86, 99, 737, 1074, 1266
BstKTI GATC 4 cut(s) 652, 679, 766, 952
BstMAI GTCTC 2 cut(s) 500, 682
BstMBI GATC 4 cut(s) 649, 676, 763, 949
BstMWI GCNNNNNNNGC 4 cut(s) 24, 191, 314, 1166
BstNI CCWGG 2 cut(s) 24, 48
BstNSI RCATGY 2 cut(s) 35, 1121
BstSCI CCNGG 2 cut(s) 22, 46
BstSFI CTRYAG 7 cut(s) 16, 36, 183, 480, 789, 1043, 1229
BstSLI GKGCMC 1 cut(s) 928
BstV1I GCAGC 9 cut(s) 22, 30, 50, 169, 292, 377, 775, 1021, 1243
BstX2I RGATCY 2 cut(s) 649, 676
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 2 cut(s) 649, 676
BsuRI GGCC 1 cut(s) 656
BtgZI GCGATG 2 cut(s) 507, 955
BtsCI GGATG 6 cut(s) 10, 86, 99, 737, 1074, 1266
BtsI GCAGTG 2 cut(s) 13, 202
BtsIMutI CAGTG 3 cut(s) 13, 202, 1195
Cac8I GCNNGC 4 cut(s) 29, 33, 303, 1119
Cfr13I GGNCC 5 cut(s) 44, 152, 682, 773, 1327
CseI GACGC 1 cut(s) 699
CsiI ACCWGGT 1 cut(s) 46
Csp6I GTAC 4 cut(s) 172, 381, 1021, 1342
CviAII CATG 5 cut(s) 32, 311, 466, 1118, 1289
CviQI GTAC 4 cut(s) 172, 381, 1021, 1342
DdeI CTNAG 2 cut(s) 197, 282
DpnI GATC 4 cut(s) 651, 678, 765, 951
DpnII GATC 4 cut(s) 649, 676, 763, 949
DrdI GACNNNNNNGTC 1 cut(s) 1193
DseDI GACNNNNNNGTC 1 cut(s) 1193
Eam1104I CTCTTC 2 cut(s) 447, 1241
EarI CTCTTC 2 cut(s) 447, 1241
Eco24I GRGCYC 1 cut(s) 993
Eco47I GGWCC 5 cut(s) 44, 152, 682, 773, 1327
Eco57I CTGAAG 1 cut(s) 1222
Eco88I CYCGRG 2 cut(s) 341, 438
EcoRII CCWGG 2 cut(s) 22, 46
EcoT38I GRGCYC 1 cut(s) 993
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 5 cut(s) 35, 314, 469, 1121, 1292
FaqI GGGAC 1 cut(s) 138
FatI CATG 5 cut(s) 31, 310, 465, 1117, 1288
FblI GTMKAC 1 cut(s) 873
FokI GGATG 6 cut(s) 17, 93, 106, 744, 1081, 1253
FriOI GRGCYC 1 cut(s) 993
FspBI CTAG 2 cut(s) 129, 953
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 656
HapII CCGG 2 cut(s) 653, 680
HgaI GACGC 1 cut(s) 699
Hin1II CATG 5 cut(s) 35, 314, 469, 1121, 1292
HincII GTYRAC 3 cut(s) 586, 889, 1263
HindII GTYRAC 3 cut(s) 586, 889, 1263
HinfI GANTC 1 cut(s) 638
HpaII CCGG 2 cut(s) 653, 680
HphI GGTGA 3 cut(s) 515, 773, 1127
Hpy166II GTNNAC 8 cut(s) 586, 773, 874, 889, 1021, 1186, 1263, 1327
Hpy188I TCNGA 4 cut(s) 198, 533, 850, 1241
Hpy8I GTNNAC 8 cut(s) 586, 773, 874, 889, 1021, 1186, 1263, 1327
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 5 cut(s) 131, 346, 599, 1142, 1306
HpyCH4III ACNGT 6 cut(s) 148, 212, 328, 336, 1015, 1190
HpyCH4IV ACGT 2 cut(s) 1108, 1344
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 191, 314, 1166
HpyF3I CTNAG 2 cut(s) 197, 282
HpySE526I ACGT 2 cut(s) 1108, 1344
Hsp92II CATG 5 cut(s) 35, 314, 469, 1121, 1292
Kpn2I TCCGGA 1 cut(s) 679
Kzo9I GATC 4 cut(s) 649, 676, 763, 949
LguI GCTCTTC 1 cut(s) 1241
LmnI GCTCC 2 cut(s) 565, 583
Lsp1109I GCAGC 9 cut(s) 22, 30, 50, 169, 292, 377, 775, 1021, 1243
LweI GCATC 2 cut(s) 71, 1046
MabI ACCWGGT 1 cut(s) 46
MaeI CTAG 2 cut(s) 129, 953
MaeII ACGT 2 cut(s) 1108, 1344
MaeIII GTNAC 1 cut(s) 103
MalI GATC 4 cut(s) 651, 678, 765, 951
MboI GATC 4 cut(s) 649, 676, 763, 949
MboII GAAGA 6 cut(s) 71, 464, 806, 1086, 1213, 1228
MfeI CAATTG 1 cut(s) 1175
MflI RGATCY 2 cut(s) 649, 676
MhlI GDGCHC 2 cut(s) 928, 993
MluCI AATT 6 cut(s) 360, 405, 736, 852, 867, 1175
MroI TCCGGA 1 cut(s) 679
MseI TTAA 2 cut(s) 668, 1152
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 3 cut(s) 41, 305, 368
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 2 cut(s) 653, 680
MspR9I CCNGG 2 cut(s) 24, 48
MunI CAATTG 1 cut(s) 1175
MvaI CCWGG 2 cut(s) 24, 48
MwoI GCNNNNNNNGC 4 cut(s) 24, 191, 314, 1166
NdeII GATC 4 cut(s) 649, 676, 763, 949
NlaIII CATG 5 cut(s) 35, 314, 469, 1121, 1292
NlaIV GGNNCC 3 cut(s) 154, 651, 1329
NspI RCATGY 2 cut(s) 35, 1121
PaeI GCATGC 2 cut(s) 35, 1121
PaeR7I CTCGAG 2 cut(s) 341, 438
PciSI GCTCTTC 1 cut(s) 1241
PfeI GAWTC 1 cut(s) 638
PflFI GACNNNGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 1345
Psp6I CCWGG 2 cut(s) 22, 46
PspGI CCWGG 2 cut(s) 22, 46
PspN4I GGNNCC 3 cut(s) 154, 651, 1329
PspPI GGNCC 5 cut(s) 44, 152, 682, 773, 1327
PstI CTGCAG 6 cut(s) 20, 40, 187, 484, 793, 1233
PsuI RGATCY 2 cut(s) 649, 676
PsyI GACNNNGTC 1 cut(s) 48
PvuII CAGCTG 3 cut(s) 41, 305, 368
RsaI GTAC 4 cut(s) 173, 382, 1022, 1343
RsaNI GTAC 4 cut(s) 172, 381, 1021, 1342
RseI CAYNNNNRTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 1241
SaqAI TTAA 2 cut(s) 668, 1152
Sau3AI GATC 4 cut(s) 649, 676, 763, 949
Sau96I GGNCC 5 cut(s) 44, 152, 682, 773, 1327
ScrFI CCNGG 2 cut(s) 24, 48
SduI GDGCHC 2 cut(s) 928, 993
SexAI ACCWGGT 1 cut(s) 46
SfaNI GCATC 2 cut(s) 71, 1046
SfcI CTRYAG 7 cut(s) 16, 36, 183, 480, 789, 1043, 1229
Sfr274I CTCGAG 2 cut(s) 341, 438
SinI GGWCC 5 cut(s) 44, 152, 682, 773, 1327
SlaI CTCGAG 2 cut(s) 341, 438
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 4 cut(s) 341, 438, 717, 1151
SmoI CTYRAG 4 cut(s) 341, 438, 717, 1151
SphI GCATGC 2 cut(s) 35, 1121
Sse9I AATT 6 cut(s) 360, 405, 736, 852, 867, 1175
SsiI CCGC 3 cut(s) 425, 857, 1157
SspMI CTAG 2 cut(s) 129, 953
StyD4I CCNGG 2 cut(s) 22, 46
TaaI ACNGT 6 cut(s) 148, 212, 328, 336, 1015, 1190
TaiI ACGT 2 cut(s) 1111, 1347
TaqI TCGA 2 cut(s) 342, 439
TasI AATT 6 cut(s) 360, 405, 736, 852, 867, 1175
TatI WGTACW 2 cut(s) 380, 1020
TauI GCSGC 1 cut(s) 1160
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 2 cut(s) 668, 1152
Tru9I TTAA 2 cut(s) 668, 1152
TscAI CASTG 3 cut(s) 20, 209, 1195
TseI GCWGC 9 cut(s) 18, 35, 38, 182, 305, 365, 788, 1034, 1231
TspDTI ATGAA 5 cut(s) 21, 510, 534, 797, 878
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 3 cut(s) 20, 209, 1195
Tth111I GACNNNGTC 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 5 cut(s) 44, 152, 682, 773, 1327
XapI RAATTY 1 cut(s) 405
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 2 cut(s) 35, 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 1062
XhoI CTCGAG 2 cut(s) 341, 438
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 2 cut(s) 129, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.