Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006857

Physical Location & Seq

Genomic Coordinates Forward (+)

3815810 .. 3819916

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGTCTCAAGATTTCCAGTTGACCATGAAATTAATTCAAAGACATATCTATGGAGAGGGAACCCATGGAATCTCGAAGTTGATGCAGTAGTGAATTCTACAAATGAGAACATGGATGAAGCACATTGTAGTCCTGGTTTGCATGCTGCGGCTGGACCTGGTCTTGCAGAAGAATGTGCAGCACTGGGTGGATGTAGAACAGGGATGGCAAAGGTCACTAAAGCATACGACCTTCCAGCTAGGAGAGTTATTCATACTGTCGGTCCCAAGTATGCAGTGAAATACCATACTGCTGCAGAAAATGCTCTGAGCCATTGTTATCGTTCTTGCCTTGAACTTCTCATTGACAGTGGCCTGCAAAGCATTGCAATGGGTTGTATATATACAGAATCTAAGAACTACCCCCGTGAGCCAGCCGCCCATGTTGCTATAAGGACTGTGCGACGGTTTCTGGAAAAGCAGAAAGACAAAATCGCAGCTGTTGTTTTTTGTACTACCACATCAATGGATACAGAGATATACAAAAGATTGCTTCCGCTTTACTTTCCCCGTGATAAACTCGAAGAGGAGATTGCCGTGTTGAAGCTTCCTGCAGATGTAGGTGATGAAAATGGCGAGACAATTATAGATGAGCGCAAAATCAGAATAAAGCCTTTGCCCAAAAAGAATATTCCAAAGCCTCCCCAGGCTCCAGTTGAGCTTCCTGTGAGTGATGTTGGCTTAGTACGAAGGAACTCATCATATTTGGATTCGTTTTTGGATCCTGCCTTCATGTCCTTAATAAAAGACCCAGATCAGAGACGCAAGGAACAATGGGAGAAAAATGCTCAAGCACAAAGTGGATGGAATTGTGCTAAAATGCTTGGGTTTGGCGACCTTGGTGGACCTCCATTGTCTGCTGCGGAAGAATACTCACTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTTAATCTTTCAGAAATTGCAGAAATGAAAATTGTTTACCGAGGTGGGGTTGACAGTGAGGGTCGTCCTGTAATGGTGGTTGTGGGGGCACATTTTCTTTTGCGATGTCTTGATCTAGAACGATTTGTACACTATGTTGTTAAGGAGTTTGAACCCTTAATACAAAAGCCTTATACTATTGTATACTTCCATTCTGCAGCATCTTTACAGCTGCAGCCAGACTTGGGGTGGATGAGAAGGGTACAACAGATACTTGGTCGTAAACACCATCGTAATCTGCATGCAATATACATCCTTCACCCGACATTTGGACTGAAGGCTGCAATATTTGCCCTGCAACTGTTCGTGGACAATGTGGTCTGGAAGAAAGTGGTATATGTAGATAGATTACTCCAGCTCTTTCGATATGTTCCTCGTGAGCGGTTGACCATCCCCGACTTTGTGTTCCAGCACGATCTGGAAGTGAACGGTGGGAAGGGTCTCATCGTGGACCCGAGAACAAAGTATGTGTATCATCGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO_2 Macro

Protein Analysis

491

Amino Acids

55.54

Weight (kDa)

8.84

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Macro	PF01661	31 - 143	9.8e-30	Macro domain
CRAL_TRIO_2	PF13716	337 - 468	2.3e-33	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69340 AT1G69340
fragaria_vesca	FvH4_4g30490 FvH4_4g30490 FvH4_4g30490 FvH4_4g30490
malus_domestica	MD13G1066000.v1.1 MD16G1064800.v1.1
prunus_persica	Prupe.1G282100_v2.0.a1 Prupe.1G282100_v2.0.a1
pyrus_communis	pycom13g05820 pycom16g05660
rosa_chinensis	RchiOBHm_Chr4g0438861
rosa_laevigata	RLG00000006324
rosa_multiflora	Rmu_sc0002505.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379880 Rroxscaffold_7G00178430
rosa_rugosa	Rorug04G0313600 Rorug04G0313700 Rorug04G0313800
rosa_samantha	Rh4AG364600 Rh4BG375700 Rh4CG389800 Rh4DG370400
rosa_wichuraiana	Rw0G007270 Rw0G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1304
AccBSI	CCGCTC	1 cut(s)	1369
AccI	GTMKAC	1 cut(s)	1131
AciI	CCGC	5 cut(s)	149, 417, 536, 902, 1369
AclWI	GGATC	2 cut(s)	755, 768
AcsI	RAATTY	2 cut(s)	94, 943
AcuI	CTGAAG	1 cut(s)	1283
AdeI	CACNNNGTG	2 cut(s)	188, 839
AfaI	GTAC	4 cut(s)	493, 726, 1077, 1191
AfiI	CCNNNNNNNGG	3 cut(s)	994, 1172, 1256
AgsI	TTSAA	5 cut(s)	39, 335, 583, 924, 1100
AjnI	CCWGG	3 cut(s)	133, 157, 684
AluBI	AGCT	6 cut(s)	239, 479, 586, 700, 1159, 1345
AluI	AGCT	6 cut(s)	239, 479, 586, 700, 1159, 1345
Alw26I	GTCTC	4 cut(s)	10, 611, 793, 1433
AlwI	GGATC	2 cut(s)	755, 768
Ama87I	CYCGRG	1 cut(s)	1441
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	9 cut(s)	146, 179, 293, 476, 899, 1145, 1159, 1162, 1268
ApoI	RAATTY	2 cut(s)	94, 943
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	4 cut(s)	155, 263, 884, 1438
AsuHPI	GGTGA	2 cut(s)	614, 1238
AvaI	CYCGRG	1 cut(s)	1441
AvaII	GGWCC	4 cut(s)	155, 263, 884, 1438
BaeGI	GKGCMC	1 cut(s)	1039
BamHI	GGATCC	1 cut(s)	760
BauI	CACGAG	1 cut(s)	1362
BbvI	GCAGC	9 cut(s)	133, 191, 280, 488, 886, 1146, 1157, 1174, 1255
BccI	CCATC	4 cut(s)	199, 837, 1224, 1385
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	3 cut(s)	135, 159, 686
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	4 cut(s)	10, 611, 793, 1433
BfaI	CTAG	2 cut(s)	240, 1064
BfmI	CTRYAG	4 cut(s)	294, 591, 1143, 1160
BfuI	GTATCC	1 cut(s)	502
Bme1390I	CCNGG	3 cut(s)	135, 159, 686
Bme18I	GGWCC	4 cut(s)	155, 263, 884, 1438
BmeT110I	CYCGRG	1 cut(s)	1441
BmgT120I	GGNCC	4 cut(s)	155, 263, 884, 1438
BmiI	GGNNCC	5 cut(s)	62, 265, 690, 762, 1440
BmrFI	CCNGG	3 cut(s)	135, 159, 686
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	73, 1157
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	2 cut(s)	675, 1325
BpuEI	CTTGAG	1 cut(s)	813
BsaI	GGTCTC	2 cut(s)	10, 1433
BsaJI	CCNNGG	4 cut(s)	65, 684, 877, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	994, 1172, 1256
Bse1I	ACTGG	3 cut(s)	17, 189, 692
Bse3DI	GCAATG	2 cut(s)	363, 375
BseBI	CCWGG	3 cut(s)	135, 159, 686
BseDI	CCNNGG	4 cut(s)	65, 684, 877, 988
BseGI	GGATG	7 cut(s)	121, 197, 210, 848, 1185, 1239, 1377
BseLI	CCNNNNNNNGG	3 cut(s)	994, 1172, 1256
BseMI	GCAATG	2 cut(s)	363, 375
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	3 cut(s)	17, 189, 692
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	1039
BseXI	GCAGC	9 cut(s)	133, 191, 280, 488, 886, 1146, 1157, 1174, 1255
BsgI	GTGCAG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	1469
BshFI	GGCC	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	1469
BsiHKCI	CYCGRG	1 cut(s)	1441
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	994, 1172, 1256
BsmAI	GTCTC	4 cut(s)	10, 611, 793, 1433
BsmBI	CGTCTC	1 cut(s)	793
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	354
Bso31I	GGTCTC	2 cut(s)	10, 1433
BsoBI	CYCGRG	1 cut(s)	1441
Bsp1286I	GDGCHC	1 cut(s)	1039
Bsp1407I	TGTACA	1 cut(s)	1075
Bsp143I	GATC	4 cut(s)	760, 793, 1060, 1402
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	5 cut(s)	149, 417, 536, 902, 1369
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	5 cut(s)	62, 265, 690, 762, 1440
BspMAI	CTGCAG	4 cut(s)	298, 595, 1147, 1164
BspPI	GGATC	2 cut(s)	755, 768
BspTNI	GGTCTC	2 cut(s)	10, 1433
BsrBI	CCGCTC	1 cut(s)	1369
BsrDI	GCAATG	2 cut(s)	363, 375
BsrGI	TGTACA	1 cut(s)	1075
BsrI	ACTGG	3 cut(s)	17, 189, 692
BssECI	CCNNGG	4 cut(s)	65, 684, 877, 988
BssMI	GATC	4 cut(s)	760, 793, 1060, 1402
BssNAI	GTATAC	1 cut(s)	1132
BssSI	CACGAG	1 cut(s)	1362
BssT1I	CCWWGG	2 cut(s)	65, 877
Bst1107I	GTATAC	1 cut(s)	1132
Bst2BI	CACGAG	1 cut(s)	1362
Bst2UI	CCWGG	3 cut(s)	135, 159, 686
Bst4CI	ACNGT	8 cut(s)	259, 350, 439, 447, 1004, 1290, 1418, 1470
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	2 cut(s)	302, 1277
BstAUI	TGTACA	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	144, 356, 414, 1230
BstDEI	CTNAG	3 cut(s)	308, 393, 721
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	7 cut(s)	121, 197, 210, 848, 1185, 1239, 1377
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	4 cut(s)	763, 796, 1063, 1405
BstMAI	GTCTC	4 cut(s)	10, 611, 793, 1433
BstMBI	GATC	4 cut(s)	760, 793, 1060, 1402
BstMCI	CGRYCG	1 cut(s)	1469
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 360, 425, 1277
BstNI	CCWGG	3 cut(s)	135, 159, 686
BstNSI	RCATGY	2 cut(s)	146, 1232
BstSCI	CCNGG	3 cut(s)	133, 157, 684
BstSFI	CTRYAG	4 cut(s)	294, 591, 1143, 1160
BstSLI	GKGCMC	1 cut(s)	1039
BstV1I	GCAGC	9 cut(s)	133, 191, 280, 488, 886, 1146, 1157, 1174, 1255
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	760
BstZ17I	GTATAC	1 cut(s)	1132
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	1066
BtsCI	GGATG	7 cut(s)	121, 197, 210, 848, 1185, 1239, 1377
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	182, 282, 355, 1009
Cac8I	GCNNGC	4 cut(s)	144, 356, 414, 1230
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	4 cut(s)	155, 263, 884, 1438
CseI	GACGC	1 cut(s)	810
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	4 cut(s)	492, 725, 1076, 1190
CviAII	CATG	7 cut(s)	26, 66, 112, 143, 422, 772, 1229
CviQI	GTAC	4 cut(s)	492, 725, 1076, 1190
DdeI	CTNAG	3 cut(s)	308, 393, 721
DpnI	GATC	4 cut(s)	762, 795, 1062, 1404
DpnII	GATC	4 cut(s)	760, 793, 1060, 1402
DraIII	CACNNNGTG	2 cut(s)	188, 839
DrdI	GACNNNNNNGTC	1 cut(s)	1304
DseDI	GACNNNNNNGTC	1 cut(s)	1304
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	65, 877
Eco31I	GGTCTC	2 cut(s)	10, 1433
Eco47I	GGWCC	4 cut(s)	155, 263, 884, 1438
Eco57I	CTGAAG	1 cut(s)	1283
Eco88I	CYCGRG	1 cut(s)	1441
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	133, 157, 684
EcoT14I	CCWWGG	2 cut(s)	65, 877
ErhI	CCWWGG	2 cut(s)	65, 877
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	7 cut(s)	29, 69, 115, 146, 425, 775, 1232
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	7 cut(s)	25, 65, 111, 142, 421, 771, 1228
FblI	GTMKAC	1 cut(s)	1131
FokI	GGATG	7 cut(s)	128, 204, 217, 855, 1192, 1226, 1364
FspBI	CTAG	2 cut(s)	240, 1064
GlaI	GCGC	1 cut(s)	635
GsuI	CTGGAG	2 cut(s)	675, 1325
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	1 cut(s)	810
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	7 cut(s)	29, 69, 115, 146, 425, 775, 1232
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	3 cut(s)	22, 1000, 1374
HindII	GTYRAC	3 cut(s)	22, 1000, 1374
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	3 cut(s)	70, 389, 749
HphI	GGTGA	2 cut(s)	614, 1238
Hpy188I	TCNGA	4 cut(s)	309, 644, 798, 961
Hpy188III	TCNNGA	9 cut(s)	9, 74, 452, 924, 1058, 1064, 1309, 1364, 1406
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	7 cut(s)	242, 723, 778, 1179, 1253, 1258, 1417
HpyCH4III	ACNGT	8 cut(s)	259, 350, 439, 447, 1004, 1290, 1418, 1470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 360, 425, 1277
HpyF3I	CTNAG	3 cut(s)	308, 393, 721
Hsp92II	CATG	7 cut(s)	29, 69, 115, 146, 425, 775, 1232
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	760, 793, 1060, 1402
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	9 cut(s)	133, 191, 280, 488, 886, 1146, 1157, 1174, 1255
LweI	GCATC	2 cut(s)	73, 1157
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	2 cut(s)	240, 1064
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	762, 795, 1062, 1404
MbiI	CCGCTC	1 cut(s)	1369
MboI	GATC	4 cut(s)	760, 793, 1060, 1402
MboII	GAAGA	4 cut(s)	182, 575, 917, 1324
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	1039
MluCI	AATT	8 cut(s)	30, 34, 94, 621, 847, 943, 963, 978
MnlI	CCTC	7 cut(s)	50, 559, 690, 897, 983, 1000, 1371
MseI	TTAA	5 cut(s)	33, 779, 951, 1089, 1106
MslI	CAYNNNNRTG	3 cut(s)	49, 368, 503
MspA1I	CMGCKG	2 cut(s)	479, 1159
MspR9I	CCNGG	3 cut(s)	135, 159, 686
MvaI	CCWGG	3 cut(s)	135, 159, 686
MwoI	GCNNNNNNNGC	4 cut(s)	302, 360, 425, 1277
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	4 cut(s)	760, 793, 1060, 1402
NlaIII	CATG	7 cut(s)	29, 69, 115, 146, 425, 775, 1232
NlaIV	GGNNCC	5 cut(s)	62, 265, 690, 762, 1440
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	2 cut(s)	146, 1232
PaeI	GCATGC	2 cut(s)	146, 1232
PfeI	GAWTC	3 cut(s)	70, 389, 749
PflFI	GACNNNGTC	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	133, 157, 684
PspGI	CCWGG	3 cut(s)	133, 157, 684
PspN4I	GGNNCC	5 cut(s)	62, 265, 690, 762, 1440
PspPI	GGNCC	4 cut(s)	155, 263, 884, 1438
PsrI	GAACNNNNNNTAC	4 cut(s)	1059, 1091, 1092, 1124
PstI	CTGCAG	4 cut(s)	298, 595, 1147, 1164
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	1 cut(s)	159
PvuII	CAGCTG	2 cut(s)	479, 1159
RsaI	GTAC	4 cut(s)	493, 726, 1077, 1191
RsaNI	GTAC	4 cut(s)	492, 725, 1076, 1190
RseI	CAYNNNNRTG	3 cut(s)	49, 368, 503
SaqAI	TTAA	5 cut(s)	33, 779, 951, 1089, 1106
Sau3AI	GATC	4 cut(s)	760, 793, 1060, 1402
Sau96I	GGNCC	4 cut(s)	155, 263, 884, 1438
ScrFI	CCNGG	3 cut(s)	135, 159, 686
SduI	GDGCHC	1 cut(s)	1039
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	73, 1157
SfcI	CTRYAG	4 cut(s)	294, 591, 1143, 1160
SinI	GGWCC	4 cut(s)	155, 263, 884, 1438
SmiMI	CAYNNNNRTG	3 cut(s)	49, 368, 503
SmlI	CTYRAG	2 cut(s)	7, 828
SmoI	CTYRAG	2 cut(s)	7, 828
SphI	GCATGC	2 cut(s)	146, 1232
Sse9I	AATT	8 cut(s)	30, 34, 94, 621, 847, 943, 963, 978
SsiI	CCGC	5 cut(s)	149, 417, 536, 902, 1369
SspI	AATATT	2 cut(s)	670, 1275
SspMI	CTAG	2 cut(s)	240, 1064
StyD4I	CCNGG	3 cut(s)	133, 157, 684
StyI	CCWWGG	2 cut(s)	65, 877
TaaI	ACNGT	8 cut(s)	259, 350, 439, 447, 1004, 1290, 1418, 1470
TaqI	TCGA	4 cut(s)	75, 561, 1351, 1465
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	8 cut(s)	30, 34, 94, 621, 847, 943, 963, 978
TatI	WGTACW	2 cut(s)	491, 1075
TauI	GCSGC	2 cut(s)	152, 419
TfiI	GAWTC	3 cut(s)	70, 389, 749
Tru1I	TTAA	5 cut(s)	33, 779, 951, 1089, 1106
Tru9I	TTAA	5 cut(s)	33, 779, 951, 1089, 1106
TscAI	CASTG	4 cut(s)	189, 282, 355, 1009
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	9 cut(s)	146, 179, 293, 476, 899, 1145, 1159, 1162, 1268
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	7 cut(s)	42, 132, 242, 621, 760, 908, 989
TspRI	CASTG	4 cut(s)	189, 282, 355, 1009
Tth111I	GACNNNGTC	1 cut(s)	159
VpaK11BI	GGWCC	4 cut(s)	155, 263, 884, 1438
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	2 cut(s)	94, 943
XbaI	TCTAGA	1 cut(s)	1063
XceI	RCATGY	2 cut(s)	146, 1232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1173
XmiI	GTMKAC	1 cut(s)	1131
XspI	CTAG	2 cut(s)	240, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.