Rh4BG375700

Protein GDAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006857
Physical Location & Seq
Forward (+)
53137708 .. 53143800
6093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG375700.1

Sequence Viewer

Length: 1278 bp
ATGTACCGGACTGTGGCTACAGCTACAACTTCAACTCGGGGTGGATCTCCCACCGATAGTGGGGATTATGTGGTTAGTTTGGATCAAGTGCCGCGGTGGAGCAATGCAGAGCATCGGTCCTCTATGGAATATGACAATGAGGATCCGTCCTTTTCAAATTCTTACTTCCCTGATCCTTTAACTTCTCAGCCCGGGGCTCAAAATGGTCTCAATGCGATAGTTTCGAGGTTTCCAGTTGATCATGAAATTAATTCAAAGATATATTTGTGGAGGGGGAACCCTTGGAATCTCGAAGTTGATGCTGTAGTAAACTCTACAAATGAGAACATGGATGAAGCACACTGCAGCCCTGGCTTGCATGCTGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCCTCATTGGGTGGATGCCGAACAGGGATGGCAAAGGTTACTAAAGCATACGACCTTCCAGCTAGGAGGGTTATCCATACTGTTGGTCCCAAGTATGCTGTGAAGTACCATACTGCTGCAGAAAATGCTCTGAGCCACTGCTACCGTTCTTGTCTTGAACTCCTCATTGAAAATGGACTGCAAAGCATTGCAATGGGCTGTATATATACAGAGGCTAAGAACTATCCTCGTGAGCCAGCTGCCCATGTTGCTATAAGGACTGTGCGACGGTTTCTCGAGAAACAGAAGGATAAAATTGCAGCTGTTGTCTTTTGTACTACCACATCAACTGATACAGAAATTTACAAAAGATTGCTTCCGCTTTACTTTCCTCGAGATAGACTTGAAGAGGAGGTTGCCATGTCAAAACTTCCTGCAGATGTAGGCGATGAAAATGGTGAGACAATTATAGATGAACGCAAAATCAGAATAAAGCCTTTGCCCAAAAAAACTGCTCCAAAGCCTCCACAAGCTCCGGTTGACCTTCCTGTTAGTGATGTAGGCTTGGCACGGAGGAACTCATCACATTTGGATTCGTATCTGGATCCGGCCTTTATGTCTTTAATAAAAGATCCGGACCAGAGACGCAGGGAACAATGGGAAAAAACTGCTCAAGCCCAAAGTGGATGGAATTGTGCTAAAATACTTGGCTTTGGTGATCTTGGTGGACCTCCATTGTCTGCTGCAGAAGAATACTCGCTTCATTCAAGATACCTTGCTAAAGCAAACTCTCTCAATCTTTCAGAAATTGCGGAAATGAAAATTGTGTATGCTCTTATATCTCTTTGCTCTTCAGTGGTAATTGTTAAATCTTTAGCTTATAGATTTTTACACCTGTCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2 Macro

Protein Analysis

425

Amino Acids

47.01

Weight (kDa)

6.43

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Macro PF01661 103 - 215 1.1e-30 Macro domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 1006
AciI CCGC 4 cut(s) 92, 94, 752, 1184
AclWI GGATC 8 cut(s) 52, 90, 137, 150, 167, 971, 984, 998
AcsI RAATTY 2 cut(s) 157, 732
AcuI CTGAAG 1 cut(s) 1209
AfaI GTAC 3 cut(s) 5, 500, 709
AfiI CCNNNNNNNGG 2 cut(s) 13, 60
AgsI TTSAA 7 cut(s) 33, 156, 255, 551, 563, 779, 1140
AjnI CCWGG 2 cut(s) 349, 373
AluBI AGCT 7 cut(s) 23, 368, 455, 632, 695, 905, 1250
AluI AGCT 7 cut(s) 23, 368, 455, 632, 695, 905, 1250
Alw26I GTCTC 3 cut(s) 212, 827, 1009
AlwI GGATC 8 cut(s) 52, 90, 137, 150, 167, 971, 984, 998
Ama87I CYCGRG 4 cut(s) 36, 191, 668, 765
Aor13HI TCCGGA 1 cut(s) 1006
AoxI GGCC 1 cut(s) 981
ApeKI GCWGC 7 cut(s) 345, 362, 365, 509, 632, 692, 1115
ApoI RAATTY 2 cut(s) 157, 732
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 5 cut(s) 117, 371, 479, 1009, 1100
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 2 cut(s) 842, 1100
AvaI CYCGRG 4 cut(s) 36, 191, 668, 765
AvaII GGWCC 5 cut(s) 117, 371, 479, 1009, 1100
BamHI GGATCC 2 cut(s) 142, 976
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 1 cut(s) 621
BbvI GCAGC 7 cut(s) 349, 357, 377, 496, 619, 704, 1102
BccI CCATC 2 cut(s) 415, 1053
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 2 cut(s) 351, 375
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 3 cut(s) 212, 827, 1009
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 7 cut(s) 18, 303, 343, 363, 510, 807, 1116
BisI GCNGC 8 cut(s) 92, 346, 363, 366, 510, 633, 693, 1116
BlsI GCNGC 8 cut(s) 93, 347, 364, 367, 511, 634, 694, 1117
Bme1390I CCNGG 4 cut(s) 192, 193, 351, 375
Bme18I GGWCC 5 cut(s) 117, 371, 479, 1009, 1100
BmeT110I CYCGRG 4 cut(s) 36, 191, 668, 765
BmgT120I GGNCC 5 cut(s) 117, 371, 479, 1009, 1100
BmiI GGNNCC 4 cut(s) 144, 278, 481, 978
BmrFI CCNGG 4 cut(s) 192, 193, 351, 375
BmsI GCATC 3 cut(s) 121, 289, 398
BpuEI CTTGAG 1 cut(s) 1029
BpuMI CCSGG 2 cut(s) 192, 193
BsaBI GATNNNNATC 1 cut(s) 969
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 5 cut(s) 92, 191, 192, 281, 349
BsaWI WCCGGW 3 cut(s) 6, 907, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 60
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 3 cut(s) 109, 579, 591
Bse8I GATNNNNATC 1 cut(s) 969
BseAI TCCGGA 1 cut(s) 1006
BseBI CCWGG 2 cut(s) 351, 375
BseDI CCNNGG 5 cut(s) 92, 191, 192, 281, 349
BseGI GGATG 4 cut(s) 337, 413, 426, 1064
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 2 cut(s) 13, 60
BseMI GCAATG 3 cut(s) 109, 579, 591
BseMII CTCAG 2 cut(s) 200, 515
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 2 cut(s) 545, 797
BseXI GCAGC 7 cut(s) 349, 357, 377, 496, 619, 704, 1102
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 983
BsiHKCI CYCGRG 4 cut(s) 36, 191, 668, 765
BsiSI CCGG 5 cut(s) 7, 192, 908, 980, 1007
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 13, 60
BsmAI GTCTC 3 cut(s) 212, 827, 1009
BsmBI CGTCTC 1 cut(s) 1009
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 1 cut(s) 983
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 4 cut(s) 36, 191, 668, 765
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 1006
Bsp143I GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
BspACI CCGC 4 cut(s) 92, 94, 752, 1184
BspANI GGCC 1 cut(s) 983
BspCNI CTCAG 2 cut(s) 199, 516
BspEI TCCGGA 1 cut(s) 1006
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 144, 278, 481, 978
BspMAI CTGCAG 5 cut(s) 347, 367, 514, 811, 1120
BspPI GGATC 8 cut(s) 52, 90, 137, 150, 167, 971, 984, 998
BspQI GCTCTTC 1 cut(s) 1228
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 3 cut(s) 109, 579, 591
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 92, 191, 192, 281, 349
BssMI GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 2 cut(s) 351, 375
Bst4CI ACNGT 5 cut(s) 13, 475, 539, 655, 663
Bst6I CTCTTC 2 cut(s) 774, 1228
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 356, 360, 630
BstDEI CTNAG 3 cut(s) 186, 524, 609
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 4 cut(s) 337, 413, 426, 1064
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 8 cut(s) 47, 85, 145, 175, 241, 979, 1006, 1093
BstMAI GTCTC 3 cut(s) 212, 827, 1009
BstMBI GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 351, 518, 641
BstNI CCWGG 2 cut(s) 351, 375
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 190, 191, 349, 373
BstSFI CTRYAG 7 cut(s) 18, 303, 343, 363, 510, 807, 1116
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 7 cut(s) 349, 357, 377, 496, 619, 704, 1102
BstX2I RGATCY 4 cut(s) 44, 142, 976, 1003
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 4 cut(s) 44, 142, 976, 1003
BsuRI GGCC 1 cut(s) 983
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 834
BtsCI GGATG 4 cut(s) 337, 413, 426, 1064
BtsI GCAGTG 2 cut(s) 340, 529
BtsIMutI CAGTG 3 cut(s) 340, 529, 1233
Cac8I GCNNGC 3 cut(s) 356, 360, 630
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 5 cut(s) 117, 371, 479, 1009, 1100
Cfr42I CCGCGG 1 cut(s) 95
Cfr9I CCCGGG 1 cut(s) 191
CseI GACGC 1 cut(s) 1026
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 3 cut(s) 4, 499, 708
CviAII CATG 5 cut(s) 242, 328, 359, 638, 793
CviQI GTAC 3 cut(s) 4, 499, 708
DdeI CTNAG 3 cut(s) 186, 524, 609
DpnI GATC 8 cut(s) 46, 84, 144, 174, 240, 978, 1005, 1092
DpnII GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
Eam1104I CTCTTC 2 cut(s) 774, 1228
EarI CTCTTC 2 cut(s) 774, 1228
Eco130I CCWWGG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 5 cut(s) 117, 371, 479, 1009, 1100
Eco57I CTGAAG 1 cut(s) 1209
Eco88I CYCGRG 4 cut(s) 36, 191, 668, 765
EcoRII CCWGG 2 cut(s) 349, 373
EcoT14I CCWWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 1009
FaeI CATG 5 cut(s) 245, 331, 362, 641, 796
FaqI GGGAC 1 cut(s) 465
FatI CATG 5 cut(s) 241, 327, 358, 637, 792
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 8 cut(s) 92, 346, 363, 366, 510, 633, 693, 1116
FokI GGATG 4 cut(s) 344, 420, 433, 1071
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 8 cut(s) 92, 346, 363, 366, 510, 633, 693, 1116
FspBI CTAG 1 cut(s) 456
GluI GCNGC 8 cut(s) 92, 346, 363, 366, 510, 633, 693, 1116
HaeIII GGCC 1 cut(s) 983
HapII CCGG 5 cut(s) 7, 192, 908, 980, 1007
HgaI GACGC 1 cut(s) 1026
Hin1II CATG 5 cut(s) 245, 331, 362, 641, 796
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 2 cut(s) 286, 965
HpaII CCGG 5 cut(s) 7, 192, 908, 980, 1007
HphI GGTGA 2 cut(s) 842, 1100
Hpy166II GTNNAC 3 cut(s) 310, 913, 1100
Hpy188I TCNGA 3 cut(s) 525, 860, 1177
Hpy8I GTNNAC 3 cut(s) 310, 913, 1100
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 3 cut(s) 458, 673, 926
HpyCH4III ACNGT 5 cut(s) 13, 475, 539, 655, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 518, 641
HpyF3I CTNAG 3 cut(s) 186, 524, 609
Hsp92II CATG 5 cut(s) 245, 331, 362, 641, 796
Kpn2I TCCGGA 1 cut(s) 1006
Ksp22I TGATCA 1 cut(s) 238
KspI CCGCGG 1 cut(s) 95
Kzo9I GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
LguI GCTCTTC 1 cut(s) 1228
LmnI GCTCC 3 cut(s) 99, 892, 910
Lsp1109I GCAGC 7 cut(s) 349, 357, 377, 496, 619, 704, 1102
LweI GCATC 3 cut(s) 121, 289, 398
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 430
MalI GATC 8 cut(s) 46, 84, 144, 174, 240, 978, 1005, 1092
MboI GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
MboII GAAGA 4 cut(s) 398, 791, 1133, 1215
MflI RGATCY 4 cut(s) 44, 142, 976, 1003
MhlI GDGCHC 1 cut(s) 199
MroI TCCGGA 1 cut(s) 1006
MseI TTAA 4 cut(s) 179, 249, 995, 1239
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 4 cut(s) 94, 368, 632, 695
MspI CCGG 5 cut(s) 7, 192, 908, 980, 1007
MspR9I CCNGG 4 cut(s) 192, 193, 351, 375
MvaI CCWGG 2 cut(s) 351, 375
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 351, 518, 641
NciI CCSGG 2 cut(s) 192, 193
NdeII GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
NlaIII CATG 5 cut(s) 245, 331, 362, 641, 796
NlaIV GGNNCC 4 cut(s) 144, 278, 481, 978
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PaeR7I CTCGAG 2 cut(s) 668, 765
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 1228
PfeI GAWTC 2 cut(s) 286, 965
PflFI GACNNNGTC 1 cut(s) 375
PkrI GCNGC 8 cut(s) 93, 347, 364, 367, 511, 634, 694, 1117
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 349, 373
PspGI CCWGG 2 cut(s) 349, 373
PspN4I GGNNCC 4 cut(s) 144, 278, 481, 978
PspPI GGNCC 5 cut(s) 117, 371, 479, 1009, 1100
PstI CTGCAG 5 cut(s) 347, 367, 514, 811, 1120
PsuI RGATCY 4 cut(s) 44, 142, 976, 1003
PsyI GACNNNGTC 1 cut(s) 375
PvuII CAGCTG 3 cut(s) 368, 632, 695
RsaI GTAC 3 cut(s) 5, 500, 709
RsaNI GTAC 3 cut(s) 4, 499, 708
RseI CAYNNNNRTG 1 cut(s) 584
SacII CCGCGG 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 1228
SaqAI TTAA 4 cut(s) 179, 249, 995, 1239
SatI GCNGC 8 cut(s) 92, 346, 363, 366, 510, 633, 693, 1116
Sau3AI GATC 8 cut(s) 44, 82, 142, 172, 238, 976, 1003, 1090
Sau96I GGNCC 5 cut(s) 117, 371, 479, 1009, 1100
ScrFI CCNGG 4 cut(s) 192, 193, 351, 375
SduI GDGCHC 1 cut(s) 199
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 3 cut(s) 121, 289, 398
SfcI CTRYAG 7 cut(s) 18, 303, 343, 363, 510, 807, 1116
Sfr274I CTCGAG 2 cut(s) 668, 765
Sfr303I CCGCGG 1 cut(s) 95
SgrBI CCGCGG 1 cut(s) 95
SinI GGWCC 5 cut(s) 117, 371, 479, 1009, 1100
SlaI CTCGAG 2 cut(s) 668, 765
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 3 cut(s) 668, 765, 1044
SmoI CTYRAG 3 cut(s) 668, 765, 1044
SphI GCATGC 1 cut(s) 362
SsiI CCGC 4 cut(s) 92, 94, 752, 1184
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 4 cut(s) 190, 191, 349, 373
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 5 cut(s) 13, 475, 539, 655, 663
TaqI TCGA 4 cut(s) 224, 291, 669, 766
TaqII GACCGA 1 cut(s) 105
TatI WGTACW 1 cut(s) 707
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 286, 965
Tru1I TTAA 4 cut(s) 179, 249, 995, 1239
Tru9I TTAA 4 cut(s) 179, 249, 995, 1239
TscAI CASTG 3 cut(s) 347, 536, 1233
TseI GCWGC 7 cut(s) 345, 362, 365, 509, 632, 692, 1115
TspDTI ATGAA 6 cut(s) 258, 348, 837, 861, 1124, 1205
TspGWI ACGGA 2 cut(s) 135, 958
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 3 cut(s) 347, 536, 1233
Tth111I GACNNNGTC 1 cut(s) 375
VpaK11BI GGWCC 5 cut(s) 117, 371, 479, 1009, 1100
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 2 cut(s) 157, 732
XceI RCATGY 1 cut(s) 362
XhoI CTCGAG 2 cut(s) 668, 765
XmaI CCCGGG 1 cut(s) 191
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.