Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006857

Physical Location & Seq

Genomic Coordinates Reverse (-)

18123104 .. 18127989

Gene Structure 4886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTCGAATTGCATGATATATTTCGTGAAGAATTGGATTTGCATGATTGGCGGACTGTGGCTACATATACAATTACAACTACAACCCAGGGTTGGTCTCCGACCGATAGTGGGGATTATGTGGCCCATTTGGATCAAGTGCTGCGGCGGAGAAATGAAGAGCATCAGTCCTCTTTGGATTATGACAACAAAGATCTGTCTTTTTCAAAATCTCACTTCCCTGATCCTTTAATTTCTCAATATGGGGTTGAGAATGGTCTCAATGAGATTGTTTCAAGGTTTCCAGTTGATCATGAAATTAATTCAAAGATATATTTGTGGAGGGGGAAACCTTGGAATCTCGAAGTTGATGTTGTTGTAAACTCTACAAATGAGGCTTCGTCGAGAGGCCTAGGCGCAATGAAATTGGGGACTGAATCATTTGGGTTTGAGCAATGGATCAAGATTATGAGGGAGATGAAGCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO_2 Macro

Protein Analysis

156

Amino Acids

18.16

Weight (kDa)

5.09

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69340 AT1G69340
fragaria_vesca	FvH4_4g30490 FvH4_4g30490 FvH4_4g30490 FvH4_4g30490
malus_domestica	MD13G1066000.v1.1 MD16G1064800.v1.1
prunus_persica	Prupe.1G282100_v2.0.a1 Prupe.1G282100_v2.0.a1
pyrus_communis	pycom13g05820 pycom16g05660
rosa_chinensis	RchiOBHm_Chr4g0438861
rosa_laevigata	RLG00000006324
rosa_multiflora	Rmu_sc0002505.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379880 Rroxscaffold_7G00178430
rosa_rugosa	Rorug04G0313600 Rorug04G0313700 Rorug04G0313800
rosa_samantha	Rh4AG364600 Rh4BG375700 Rh4CG389800 Rh4DG370400
rosa_wichuraiana	Rw0G007270 Rw0G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 145, 148
AclWI	GGATC	3 cut(s)	141, 218, 446
AfiI	CCNNNNNNNGG	2 cut(s)	93, 111
AgsI	TTSAA	3 cut(s)	207, 276, 306
AjnI	CCWGG	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	102, 263
AlwI	GGATC	3 cut(s)	141, 218, 446
AoxI	GGCC	2 cut(s)	123, 388
ApeKI	GCWGC	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	124
AvrII	CCTAGG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	102, 263
BfaI	CTAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	143, 146
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	2 cut(s)	144, 147
Bme1390I	CCNGG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	172
BsaI	GGTCTC	2 cut(s)	102, 263
BsaJI	CCNNGG	4 cut(s)	87, 88, 332, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 111
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	405, 440
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	4 cut(s)	87, 88, 332, 391
BseLI	CCNNNNNNNGG	2 cut(s)	93, 111
BseMI	GCAATG	2 cut(s)	405, 440
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	125, 390
BsiEI	CGRYCG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	93, 111
BsmAI	GTCTC	2 cut(s)	102, 263
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	125, 390
Bso31I	GGTCTC	2 cut(s)	102, 263
Bsp143I	GATC	5 cut(s)	133, 193, 223, 289, 438
BspACI	CCGC	3 cut(s)	52, 145, 148
BspANI	GGCC	2 cut(s)	125, 390
BspHI	TCATGA	1 cut(s)	292
BspPI	GGATC	3 cut(s)	141, 218, 446
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	2 cut(s)	102, 263
BsrDI	GCAATG	2 cut(s)	405, 440
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	87, 88, 332, 391
BssMI	GATC	5 cut(s)	133, 193, 223, 289, 438
BssT1I	CCWWGG	2 cut(s)	332, 391
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	5 cut(s)	136, 196, 226, 292, 441
BstMAI	GTCTC	2 cut(s)	102, 263
BstMBI	GATC	5 cut(s)	133, 193, 223, 289, 438
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	125, 390
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	124
CviAII	CATG	3 cut(s)	14, 44, 293
CviJI	RGCY	4 cut(s)	62, 125, 377, 390
CviKI_1	RGCY	4 cut(s)	62, 125, 377, 390
DpnI	GATC	5 cut(s)	135, 195, 225, 291, 440
DpnII	GATC	5 cut(s)	133, 193, 223, 289, 438
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	67, 163
Eco130I	CCWWGG	2 cut(s)	332, 391
Eco147I	AGGCCT	1 cut(s)	390
Eco31I	GGTCTC	2 cut(s)	102, 263
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	332, 391
ErhI	CCWWGG	2 cut(s)	332, 391
FaeI	CATG	3 cut(s)	17, 47, 296
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	3 cut(s)	13, 43, 292
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	143, 146
Fsp4HI	GCNGC	2 cut(s)	143, 146
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	2 cut(s)	143, 146
HaeIII	GGCC	2 cut(s)	125, 390
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	3 cut(s)	17, 47, 296
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	2 cut(s)	337, 416
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	5 cut(s)	26, 293, 341, 384, 442
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	13, 43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	17, 47, 296
HspAI	GCGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	133, 193, 223, 289, 438
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	74, 101, 234, 297
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	392
MalI	GATC	5 cut(s)	135, 195, 225, 291, 440
MboI	GATC	5 cut(s)	133, 193, 223, 289, 438
MboII	GAAGA	2 cut(s)	41, 170
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	7 cut(s)	8, 32, 72, 231, 297, 301, 404
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	181, 315, 367, 380, 444
MseI	TTAA	2 cut(s)	230, 300
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	5 cut(s)	133, 193, 223, 289, 438
NlaIII	CATG	3 cut(s)	17, 47, 296
PagI	TCATGA	1 cut(s)	292
PasI	CCCWGGG	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	337, 416
PkrI	GCNGC	2 cut(s)	144, 147
PshBI	ATTAAT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	230, 300
SatI	GCNGC	2 cut(s)	143, 146
Sau3AI	GATC	5 cut(s)	133, 193, 223, 289, 438
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	2 cut(s)	281, 334
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	7 cut(s)	8, 32, 72, 231, 297, 301, 404
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	3 cut(s)	52, 145, 148
SspMI	CTAG	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	332, 391
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	6, 342, 383
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	7 cut(s)	8, 32, 72, 231, 297, 301, 404
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	337, 416
Tru1I	TTAA	2 cut(s)	230, 300
Tru9I	TTAA	2 cut(s)	230, 300
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	171, 309, 416
VspI	ATTAAT	1 cut(s)	300
XmaJI	CCTAGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.