Rorug04G0313700

Protein GDAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006857
Physical Location & Seq
Forward (+)
48861995 .. 48865483
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0313700.1

Sequence Viewer

Length: 2064 bp
ATGGCTGACGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAAGCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACATGCACCTCCCCCTGGCACGTCTCCTGTCTCTCTGTCCGTCCCGATACTGTGGCCGAGGCTTTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCCGATTCCGAGCAGGCTGCTGTGAATTCTGTCGGCGCCAGAGGTGACGGAGGCGGCGACGACGGTCTCATCGCCGCTATCAAAGCCCTGGAGGCCGACGAGTCATTGACGGAGAGAGAAAAGGCCAGGAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCAGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCAATACTCCTACGGAGCTTTTGCTGCACGATTTGCATGCATCTTCCTGAGAGACCTGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGCACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCATCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGACGGCCAACGCCCCGTGGCGCATTACCTTCACAACCAGGACCGTCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCTAATGCATCGAGTGGAAGAATATTTGTTACTACTGCTAAGGACCATTTTGGTCCCATAACGGCCGAGTATGACCCGGAGAGGAATGAGGGTGTGTTGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTTCGGGGCAGAGTAGGCATGGTGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGATGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGTGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAGGAACACAGTAAAGACCAGGAGTTTACGCACATGAATGAAGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTTGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTTAAGGTATGCAGATACCTTTTCATGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGTCCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAAAGGCAACCGATATAACAGAAAGAAAAGGATCTTCATCGTGGGACTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGAGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTCATCGGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGAGTTTGGCTGTCATATATGTCATAAGGTTTTGACTTCCCCTGTTACAACACCATGCGCTCACAACTTCTGCAAAGCATGCTTAGAAGGTGCCTTTGCTGGTTTGACTTATATAAAAGAGAGGACATGCCATGGAAGAAGAACACTGAGACCACAAAAGAATGTCATGAATTGCCCGCTGTGTTCGACTGACATAGCTGAGTTTCTCCAAAATCTAAAGGTTAATACGGATCTCATGAATGCCATAAAAGACATGCAGCAGAAATTGGAAGATTTGGAAGAGGAAGAGGAAGCTGAAAAGGAAGTAGAAGATCAGGAACAGGAAGAAATTGACAATGACGGTAAAGAGACTGTGGATGAAGCCAAAGAAAGCATCTCACCAGCACCCCAGACTGAAACTACACCGCAAGAAGCTTGTGAGCAAAAGAAACCAACTCGTAAGCGAAAGAAGTCAAACAATGCCGAAAATGCGGTGGATGCTGGGGTAACGGCCAGGAGGAGTAAGAAGAGTAAAATGGCAGTGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2 Macro

Protein Analysis

687

Amino Acids

77.12

Weight (kDa)

7.64

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 143 - 187 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 144 - 182 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 144 - 182 5.6e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 271 - 421 4.5e-52 SAD/SRA domain
zf-RING_UBOX PF13445 515 - 542 7e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1276
AccB1I GGYRCC 2 cut(s) 221, 1622
AccI GTMKAC 1 cut(s) 615
AccII CGCG 1 cut(s) 624
AccIII TCCGGA 3 cut(s) 169, 682, 938
AclWI GGATC 4 cut(s) 1113, 1372, 1519, 1770
AcoI YGGCCR 5 cut(s) 144, 186, 640, 789, 2022
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 9, 222
AfeI AGCGCT 1 cut(s) 1074
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 1280
AgsI TTSAA 2 cut(s) 1193, 1333
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 6 cut(s) 104, 273, 311, 672, 1047, 2024
AluBI AGCT 5 cut(s) 423, 1493, 1730, 1826, 1946
AluI AGCT 5 cut(s) 423, 1493, 1730, 1826, 1946
Alw21I GWGCWC 3 cut(s) 181, 922, 1495
Alw26I GTCTC 9 cut(s) 16, 118, 125, 257, 451, 570, 1498, 1675, 1874
AlwI GGATC 4 cut(s) 1113, 1372, 1519, 1770
Aor13HI TCCGGA 3 cut(s) 169, 682, 938
Aor51HI AGCGCT 1 cut(s) 1074
AoxI GGCC 8 cut(s) 144, 186, 279, 309, 640, 789, 1307, 2022
ApeKI GCWGC 4 cut(s) 203, 349, 429, 1789
ApoI RAATTY 1 cut(s) 211
AspLEI GCGC 7 cut(s) 224, 371, 626, 658, 1075, 1150, 1592
AspS9I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 242, 1902
AvaII GGWCC 5 cut(s) 676, 769, 779, 961, 1297
BanI GGYRCC 2 cut(s) 221, 1622
BanII GRGCYC 1 cut(s) 1495
BbsI GAAGAC 2 cut(s) 957, 1131
Bbv12I GWGCWC 3 cut(s) 181, 922, 1495
BbvCI CCTCAGC 1 cut(s) 1076
BbvI GCAGC 4 cut(s) 190, 336, 416, 1801
BccI CCATC 4 cut(s) 359, 568, 844, 1169
BceAI ACGGC 7 cut(s) 46, 49, 337, 655, 804, 982, 2037
BcgI CGANNNNNNTGC 6 cut(s) 185, 219, 424, 458, 879, 913
BciT130I CCWGG 6 cut(s) 106, 275, 313, 674, 1049, 2026
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 9 cut(s) 16, 118, 125, 257, 451, 570, 1498, 1675, 1874
BfaI CTAG 1 cut(s) 1152
BfoI RGCGCY 2 cut(s) 225, 1076
BfuAI ACCTGC 1 cut(s) 1276
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 8 cut(s) 186, 204, 241, 261, 350, 430, 547, 1790
BlsI GCNGC 8 cut(s) 187, 205, 242, 262, 351, 431, 548, 1791
Bme1390I CCNGG 7 cut(s) 106, 275, 313, 674, 803, 1049, 2026
Bme18I GGWCC 5 cut(s) 676, 769, 779, 961, 1297
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
BmiI GGNNCC 4 cut(s) 223, 781, 1298, 1624
BmrFI CCNGG 7 cut(s) 106, 275, 313, 674, 803, 1049, 2026
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 6 cut(s) 48, 454, 743, 1447, 1914, 1999
BmuI ACTGGG 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 957, 1131
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 2 cut(s) 765, 1076
BpuMI CCSGG 1 cut(s) 803
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 1369
BsaHI GRCGYC 2 cut(s) 9, 222
BsaI GGTCTC 3 cut(s) 257, 451, 1675
BsaJI CCNNGG 8 cut(s) 104, 147, 273, 651, 964, 1274, 1304, 1663
BsaWI WCCGGW 4 cut(s) 169, 682, 938, 986
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 3 cut(s) 164, 1103, 1439
Bse3DI GCAATG 2 cut(s) 344, 869
Bse8I GATNNNNATC 1 cut(s) 1369
BseAI TCCGGA 3 cut(s) 169, 682, 938
BseBI CCWGG 6 cut(s) 106, 275, 313, 674, 1049, 2026
BseDI CCNNGG 8 cut(s) 104, 147, 273, 651, 964, 1274, 1304, 1663
BseGI GGATG 4 cut(s) 855, 1462, 1894, 2014
BseJI GATNNNNATC 1 cut(s) 1369
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 2 cut(s) 344, 869
BseMII CTCAG 6 cut(s) 444, 560, 935, 1067, 1670, 1722
BseNI ACTGG 3 cut(s) 164, 1103, 1439
BseRI GAGGAG 3 cut(s) 86, 1478, 2044
BseX3I CGGCCG 2 cut(s) 186, 789
BseXI GCAGC 4 cut(s) 190, 336, 416, 1801
BseYI CCCAGC 1 cut(s) 2012
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 624
Bsh1285I CGRYCG 2 cut(s) 189, 792
BshFI GGCC 8 cut(s) 146, 188, 281, 311, 642, 791, 1309, 2024
BshNI GGYRCC 2 cut(s) 221, 1622
BsiEI CGRYCG 2 cut(s) 189, 792
BsiHKAI GWGCWC 3 cut(s) 181, 922, 1495
BsiSI CCGG 7 cut(s) 68, 170, 182, 683, 803, 939, 987
BslFI GGGAC 4 cut(s) 117, 765, 1310, 1391
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 9 cut(s) 16, 118, 125, 257, 451, 570, 1498, 1675, 1874
BsmBI CGTCTC 3 cut(s) 16, 118, 570
BsmFI GGGAC 4 cut(s) 117, 765, 1310, 1391
BsmI GAATGC 3 cut(s) 692, 860, 1777
BsnI GGCC 8 cut(s) 146, 188, 281, 311, 642, 791, 1309, 2024
Bso31I GGTCTC 3 cut(s) 257, 451, 1675
Bsp1286I GDGCHC 3 cut(s) 181, 922, 1495
Bsp13I TCCGGA 3 cut(s) 169, 682, 938
Bsp143I GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
Bsp19I CCATGG 1 cut(s) 1663
BspANI GGCC 8 cut(s) 146, 188, 281, 311, 642, 791, 1309, 2024
BspCNI CTCAG 6 cut(s) 445, 561, 934, 1068, 1671, 1723
BspEI TCCGGA 3 cut(s) 169, 682, 938
BspFNI CGCG 1 cut(s) 624
BspHI TCATGA 3 cut(s) 1248, 1698, 1767
BspLI GGNNCC 4 cut(s) 223, 781, 1298, 1624
BspMI ACCTGC 1 cut(s) 1276
BspPI GGATC 4 cut(s) 1113, 1372, 1519, 1770
BspT107I GGYRCC 2 cut(s) 221, 1622
BspTNI GGTCTC 3 cut(s) 257, 451, 1675
BsrDI GCAATG 2 cut(s) 344, 869
BsrI ACTGG 3 cut(s) 164, 1103, 1439
BssECI CCNNGG 8 cut(s) 104, 147, 273, 651, 964, 1274, 1304, 1663
BssMI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
BssNI GRCGYC 2 cut(s) 9, 222
BssT1I CCWWGG 3 cut(s) 1274, 1304, 1663
Bst2UI CCWGG 6 cut(s) 106, 275, 313, 674, 1049, 2026
Bst4CI ACNGT 9 cut(s) 142, 176, 251, 395, 680, 1040, 1301, 1874, 1885
Bst6I CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2033
BstACI GRCGYC 2 cut(s) 9, 222
BstAPI GCANNNNNTGC 4 cut(s) 48, 93, 438, 1611
BstBAI YACGTR 1 cut(s) 514
BstDEI CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
BstDSI CCRYGG 3 cut(s) 651, 964, 1663
BstF5I GGATG 4 cut(s) 855, 1462, 1894, 2014
BstFNI CGCG 1 cut(s) 624
BstH2I RGCGCY 2 cut(s) 225, 1076
BstHHI GCGC 7 cut(s) 224, 371, 626, 658, 1075, 1150, 1592
BstKTI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
BstMAI GTCTC 9 cut(s) 16, 118, 125, 257, 451, 570, 1498, 1675, 1874
BstMBI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
BstMCI CGRYCG 2 cut(s) 189, 792
BstNI CCWGG 6 cut(s) 106, 275, 313, 674, 1049, 2026
BstNSI RCATGY 6 cut(s) 96, 445, 1284, 1614, 1662, 1789
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 7 cut(s) 104, 273, 311, 672, 801, 1047, 2024
BstSNI TACGTA 1 cut(s) 514
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 4 cut(s) 190, 336, 416, 1801
BstV2I GAAGAC 2 cut(s) 957, 1131
BstX2I RGATCY 4 cut(s) 1118, 1364, 1524, 1762
BstYI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
BstZI CGGCCG 2 cut(s) 186, 789
BsuRI GGCC 8 cut(s) 146, 188, 281, 311, 642, 791, 1309, 2024
BtgI CCRYGG 3 cut(s) 651, 964, 1663
BtgZI GCGATG 3 cut(s) 241, 378, 860
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 4 cut(s) 855, 1462, 1894, 2014
BtsI GCAGTG 2 cut(s) 1167, 2058
BtsIMutI CAGTG 5 cut(s) 1110, 1167, 1446, 1676, 2058
BveI ACCTGC 1 cut(s) 1276
CciI TCATGA 3 cut(s) 1248, 1698, 1767
CfoI GCGC 7 cut(s) 224, 371, 626, 658, 1075, 1150, 1592
Cfr13I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
CseI GACGC 1 cut(s) 413
DdeI CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
DinI GGCGCC 1 cut(s) 223
DpnI GATC 5 cut(s) 1120, 1366, 1526, 1764, 1845
DpnII GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
EaeI YGGCCR 5 cut(s) 144, 186, 640, 789, 2022
EagI CGGCCG 2 cut(s) 186, 789
Eam1104I CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2033
EarI CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2033
Ecl136II GAGCTC 1 cut(s) 1493
EclXI CGGCCG 2 cut(s) 186, 789
Eco105I TACGTA 1 cut(s) 514
Eco130I CCWWGG 3 cut(s) 1274, 1304, 1663
Eco147I AGGCCT 1 cut(s) 1309
Eco24I GRGCYC 1 cut(s) 1495
Eco31I GGTCTC 3 cut(s) 257, 451, 1675
Eco47I GGWCC 5 cut(s) 676, 769, 779, 961, 1297
Eco47III AGCGCT 1 cut(s) 1074
Eco52I CGGCCG 2 cut(s) 186, 789
Eco53kI GAGCTC 1 cut(s) 1493
EcoICRI GAGCTC 1 cut(s) 1493
EcoRI GAATTC 1 cut(s) 211
EcoRII CCWGG 6 cut(s) 104, 273, 311, 672, 1047, 2024
EcoT14I CCWWGG 3 cut(s) 1274, 1304, 1663
EcoT22I ATGCAT 2 cut(s) 447, 736
EcoT38I GRGCYC 1 cut(s) 1495
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 3 cut(s) 1274, 1304, 1663
Esp3I CGTCTC 3 cut(s) 16, 118, 570
FaqI GGGAC 4 cut(s) 117, 765, 1310, 1391
FauI CCCGC 1 cut(s) 1716
FauNDI CATATG 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 8 cut(s) 186, 204, 241, 261, 350, 430, 547, 1790
FokI GGATG 4 cut(s) 862, 1469, 1901, 2021
FriOI GRGCYC 1 cut(s) 1495
Fsp4HI GCNGC 8 cut(s) 186, 204, 241, 261, 350, 430, 547, 1790
FspBI CTAG 1 cut(s) 1152
GlaI GCGC 7 cut(s) 223, 370, 625, 657, 1074, 1149, 1591
GluI GCNGC 8 cut(s) 186, 204, 241, 261, 350, 430, 547, 1790
GsaI CCCAGC 1 cut(s) 2016
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 2 cut(s) 225, 1076
HaeIII GGCC 8 cut(s) 146, 188, 281, 311, 642, 791, 1309, 2024
HapII CCGG 7 cut(s) 68, 170, 182, 683, 803, 939, 987
HgaI GACGC 1 cut(s) 413
HhaI GCGC 7 cut(s) 224, 371, 626, 658, 1075, 1150, 1592
Hin1I GRCGYC 2 cut(s) 9, 222
Hin6I GCGC 7 cut(s) 222, 369, 624, 656, 1073, 1148, 1590
HinP1I GCGC 7 cut(s) 222, 369, 624, 656, 1073, 1148, 1590
HindIII AAGCTT 1 cut(s) 1944
HinfI GANTC 8 cut(s) 76, 191, 287, 374, 556, 573, 598, 871
HpaII CCGG 7 cut(s) 68, 170, 182, 683, 803, 939, 987
HphI GGTGA 2 cut(s) 242, 1902
Hpy166II GTNNAC 2 cut(s) 616, 1056
Hpy188I TCNGA 6 cut(s) 196, 358, 379, 570, 698, 2063
Hpy8I GTNNAC 2 cut(s) 616, 1056
Hpy99I CGWCG 6 cut(s) 35, 67, 248, 251, 287, 641
HpyAV CCTTC 3 cut(s) 674, 709, 1613
HpyCH4III ACNGT 9 cut(s) 142, 176, 251, 395, 680, 1040, 1301, 1874, 1885
HpyCH4IV ACGT 4 cut(s) 9, 111, 513, 612
HpyF3I CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
HpySE526I ACGT 4 cut(s) 9, 111, 513, 612
Hsp92I GRCGYC 2 cut(s) 9, 222
HspAI GCGC 7 cut(s) 222, 369, 624, 656, 1073, 1148, 1590
KasI GGCGCC 1 cut(s) 221
Kpn2I TCCGGA 3 cut(s) 169, 682, 938
Kzo9I GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
LmnI GCTCC 3 cut(s) 184, 420, 1276
Lsp1109I GCAGC 4 cut(s) 190, 336, 416, 1801
LweI GCATC 6 cut(s) 48, 454, 743, 1447, 1914, 1999
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 4 cut(s) 9, 111, 513, 612
MaeIII GTNAC 6 cut(s) 230, 463, 479, 754, 1576, 2017
MalI GATC 5 cut(s) 1120, 1366, 1526, 1764, 1845
MboI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
MflI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
MhlI GDGCHC 3 cut(s) 181, 922, 1495
MluCI AATT 7 cut(s) 211, 484, 541, 1188, 1702, 1796, 1860
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 296
Mph1103I ATGCAT 2 cut(s) 447, 736
MroI TCCGGA 3 cut(s) 169, 682, 938
MseI TTAA 4 cut(s) 1007, 1082, 1227, 1755
MslI CAYNNNNRTG 2 cut(s) 41, 1065
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 7 cut(s) 68, 170, 182, 683, 803, 939, 987
MspR9I CCNGG 7 cut(s) 106, 275, 313, 674, 803, 1049, 2026
Mva1269I GAATGC 3 cut(s) 692, 860, 1777
MvaI CCWGG 6 cut(s) 106, 275, 313, 674, 1049, 2026
MvnI CGCG 1 cut(s) 624
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 803
NcoI CCATGG 1 cut(s) 1663
NdeI CATATG 1 cut(s) 1144
NdeII GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
NlaIV GGNNCC 4 cut(s) 223, 781, 1298, 1624
NmeAIII GCCGAG 2 cut(s) 172, 817
NmuCI GTSAC 2 cut(s) 230, 479
NsiI ATGCAT 2 cut(s) 447, 736
NspI RCATGY 6 cut(s) 96, 445, 1284, 1614, 1662, 1789
PaeI GCATGC 2 cut(s) 445, 1614
PagI TCATGA 3 cut(s) 1248, 1698, 1767
PceI AGGCCT 1 cut(s) 1309
PciI ACATGT 1 cut(s) 1280
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 510
PctI GAATGC 3 cut(s) 692, 860, 1777
PfeI GAWTC 7 cut(s) 76, 191, 374, 556, 573, 598, 871
PkrI GCNGC 8 cut(s) 187, 205, 242, 262, 351, 431, 548, 1791
PleI GAGTC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 514
PscI ACATGT 1 cut(s) 1280
PshAI GACNNNNGTC 1 cut(s) 249
PsiI TTATAA 1 cut(s) 1322
Psp124BI GAGCTC 1 cut(s) 1495
Psp6I CCWGG 6 cut(s) 104, 273, 311, 672, 1047, 2024
PspFI CCCAGC 1 cut(s) 2012
PspGI CCWGG 6 cut(s) 104, 273, 311, 672, 1047, 2024
PspN4I GGNNCC 4 cut(s) 223, 781, 1298, 1624
PspPI GGNCC 5 cut(s) 676, 769, 779, 961, 1297
PsuI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
RseI CAYNNNNRTG 2 cut(s) 41, 1065
SacI GAGCTC 1 cut(s) 1495
SaqAI TTAA 4 cut(s) 1007, 1082, 1227, 1755
SatI GCNGC 8 cut(s) 186, 204, 241, 261, 350, 430, 547, 1790
Sau3AI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
Sau96I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 7 cut(s) 106, 275, 313, 674, 803, 1049, 2026
SduI GDGCHC 3 cut(s) 181, 922, 1495
SfaNI GCATC 6 cut(s) 48, 454, 743, 1447, 1914, 1999
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 5 cut(s) 676, 769, 779, 961, 1297
SmiMI CAYNNNNRTG 2 cut(s) 41, 1065
SnaBI TACGTA 1 cut(s) 514
SphI GCATGC 2 cut(s) 445, 1614
Sse9I AATT 7 cut(s) 211, 484, 541, 1188, 1702, 1796, 1860
SseBI AGGCCT 1 cut(s) 1309
SspDI GGCGCC 1 cut(s) 221
SspI AATATT 1 cut(s) 750
SspMI CTAG 1 cut(s) 1152
SstI GAGCTC 1 cut(s) 1495
StuI AGGCCT 1 cut(s) 1309
StyD4I CCNGG 7 cut(s) 104, 273, 311, 672, 801, 1047, 2024
StyI CCWWGG 3 cut(s) 1274, 1304, 1663
TaaI ACNGT 9 cut(s) 142, 176, 251, 395, 680, 1040, 1301, 1874, 1885
TaiI ACGT 4 cut(s) 12, 114, 516, 615
TaqI TCGA 2 cut(s) 737, 1718
TasI AATT 7 cut(s) 211, 484, 541, 1188, 1702, 1796, 1860
TauI GCSGC 4 cut(s) 188, 243, 263, 549
TfiI GAWTC 7 cut(s) 76, 191, 374, 556, 573, 598, 871
Tru1I TTAA 4 cut(s) 1007, 1082, 1227, 1755
Tru9I TTAA 4 cut(s) 1007, 1082, 1227, 1755
TscAI CASTG 5 cut(s) 1110, 1167, 1446, 1683, 2058
TseFI GTSAC 2 cut(s) 230, 479
TseI GCWGC 4 cut(s) 203, 349, 429, 1789
Tsp45I GTSAC 2 cut(s) 230, 479
TspGWI ACGGA 7 cut(s) 4, 119, 249, 311, 433, 1036, 1775
TspRI CASTG 5 cut(s) 1110, 1167, 1446, 1683, 2058
VpaK11BI GGWCC 5 cut(s) 676, 769, 779, 961, 1297
XapI RAATTY 1 cut(s) 211
XceI RCATGY 6 cut(s) 96, 445, 1284, 1614, 1662, 1789
XcmI CCANNNNNNNNNTGG 1 cut(s) 1535
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 1 cut(s) 1152
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 2 cut(s) 447, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.