Rorug04G0313800

Protein GDAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006857
Physical Location & Seq
Reverse (-)
48865816 .. 48867469
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0313800.1

Sequence Viewer

Length: 840 bp
ATGGCTTCACATATGTTGTGTGCATCCATCGTCACTCCTACTCCTGCATCAAACCTCACCAAGCTTCCAAGGCCTTCTTCTTCTTCATCACCACCCAGACTTCCAATTCGACTCGGGTCTTTCAAGTGCAAGGCTCAAAGCTCAAGCTCTCAGTCTCAGACTGTTTATCAGGGCGTCTATGGCCCTTGGTCTGTTGACTCCACCGACGTTAAAGAGGTGATTCTGTACAGGTCAGGATTGGTGACTGCAGCTACGTCATTTGTAATTGCAGCTTCTACTGCTTTTTTGCCCGACAGTTTCTTGGCCACTGAGATTGTTAAGCCCAATCTTGATTACATATACGCAATTGGAGCTGGTGGGTTGGGTTTGTCCTTGGTTCTGATTCACATTTATGTGACTGAGATTAAGCGCACTTTGCAAGCGTTTTGGGGGCTTGGTGTTGTTGGGTCTTTGGCTACATATGTATGCTTGGCTCAACCAGCTGGAGAGGGCTTGGTTCAGTATGTTGTTGATAACCCAGTTGCTGTTTGGTTTGTTGGTCCTTTGTTTGCAGCGCTCACAGGACTGGTTTTCAAGGAAGGTCTTTGCTATGGAAAGTTGGAAGCTGGAATTCTCACATTTATTATACCCATTGTTCTTCTTGGGCACCTGAGTGGCTTGATGGATGATGGAGTGAAACTTTCTCTACTGGGTTCATGGATGGCCCTGTTTGTATTATTTGCTGGAAGGAAGTTCACACAACCCATTAAGGATGACATCGGTGACAAGTCTGTCTTCATATTCCAGTCTCTGCCCGAAGACGAGAAGAAGGCCTTGGTTAAGAAGCTTGAGCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2 Macro

Protein Analysis

279

Amino Acids

29.92

Weight (kDa)

8.26

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2301 PF10063 123 - 261 3e-54 Uncharacterized integral membrane protein (DUF2301)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 124, 574
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 797, 829
AleI CACNNNNGTG 1 cut(s) 651
AluBI AGCT 9 cut(s) 64, 141, 147, 251, 272, 353, 482, 605, 826
AluI AGCT 9 cut(s) 64, 141, 147, 251, 272, 353, 482, 605, 826
Alw26I GTCTC 2 cut(s) 159, 792
AlwNI CAGNNNCTG 2 cut(s) 524, 790
Ama87I CYCGRG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 5 cut(s) 71, 181, 303, 702, 810
ApeKI GCWGC 3 cut(s) 248, 269, 551
ApoI RAATTY 1 cut(s) 609
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 2 cut(s) 411, 556
AspS9I GGNCC 3 cut(s) 182, 539, 703
AsuHPI GGTGA 5 cut(s) 49, 81, 229, 253, 773
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 648
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 645
BbsI GAAGAC 2 cut(s) 766, 804
BbvI GCAGC 3 cut(s) 260, 281, 563
BccI CCATC 4 cut(s) 35, 655, 662, 694
BcoDI GTCTC 2 cut(s) 159, 792
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 557
BisI GCNGC 3 cut(s) 249, 270, 552
BlsI GCNGC 3 cut(s) 250, 271, 553
Bme18I GGWCC 1 cut(s) 539
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 182, 539, 703
BmiI GGNNCC 1 cut(s) 647
BmrI ACTGGG 2 cut(s) 512, 698
BmsI GCATC 2 cut(s) 32, 56
BmuI ACTGGG 2 cut(s) 512, 698
BoxI GACNNNNGTC 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 766, 804
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 68, 185, 372, 813
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse1I ACTGG 4 cut(s) 518, 570, 693, 784
BseDI CCNNGG 4 cut(s) 68, 185, 372, 813
BseGI GGATG 4 cut(s) 23, 670, 705, 757
BseMII CTCAG 5 cut(s) 164, 170, 300, 390, 641
BseNI ACTGG 4 cut(s) 518, 570, 693, 784
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 3 cut(s) 260, 281, 563
BshFI GGCC 5 cut(s) 73, 183, 305, 704, 812
BshNI GGYRCC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 159, 792
BsnI GGCC 5 cut(s) 73, 183, 305, 704, 812
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 648
Bsp1407I TGTACA 1 cut(s) 225
BspANI GGCC 5 cut(s) 73, 183, 305, 704, 812
BspCNI CTCAG 5 cut(s) 163, 169, 301, 391, 642
BspLI GGNNCC 1 cut(s) 647
BspMAI CTGCAG 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 4 cut(s) 518, 570, 693, 784
BssECI CCNNGG 4 cut(s) 68, 185, 372, 813
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 4 cut(s) 68, 185, 372, 813
Bst4CI ACNGT 3 cut(s) 163, 296, 837
BstACI GRCGYC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 5 cut(s) 150, 156, 309, 399, 650
BstF5I GGATG 4 cut(s) 23, 670, 705, 757
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 2 cut(s) 411, 556
BstMAI GTCTC 2 cut(s) 159, 792
BstMWI GCNNNNNNNGC 6 cut(s) 70, 180, 278, 350, 415, 479
BstPAI GACNNNNGTC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 3 cut(s) 260, 281, 563
BstV2I GAAGAC 2 cut(s) 766, 804
BsuRI GGCC 5 cut(s) 73, 183, 305, 704, 812
BtsCI GGATG 4 cut(s) 23, 670, 705, 757
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 2 cut(s) 524, 790
CfoI GCGC 2 cut(s) 411, 556
Cfr13I GGNCC 3 cut(s) 182, 539, 703
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 226
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 1 cut(s) 696
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 5 cut(s) 150, 156, 309, 399, 650
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 4 cut(s) 68, 185, 372, 813
Eco147I AGGCCT 2 cut(s) 73, 812
Eco47I GGWCC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 609
EcoT14I CCWWGG 4 cut(s) 68, 185, 372, 813
ErhI CCWWGG 4 cut(s) 68, 185, 372, 813
FaeI CATG 1 cut(s) 699
FalI AAGNNNNNCTT 6 cut(s) 61, 93, 758, 790, 797, 829
FatI CATG 1 cut(s) 695
FauNDI CATATG 2 cut(s) 12, 460
Fnu4HI GCNGC 3 cut(s) 249, 270, 552
FokI GGATG 4 cut(s) 10, 677, 712, 764
Fsp4HI GCNGC 3 cut(s) 249, 270, 552
GlaI GCGC 2 cut(s) 410, 555
GluI GCNGC 3 cut(s) 249, 270, 552
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 5 cut(s) 73, 183, 305, 704, 812
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 411, 556
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 699
Hin6I GCGC 2 cut(s) 409, 554
HinP1I GCGC 2 cut(s) 409, 554
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 62, 824
HinfI GANTC 4 cut(s) 111, 197, 220, 382
HphI GGTGA 5 cut(s) 49, 81, 229, 253, 773
Hpy166II GTNNAC 2 cut(s) 196, 735
Hpy188I TCNGA 2 cut(s) 159, 381
Hpy188III TCNNGA 2 cut(s) 234, 329
Hpy8I GTNNAC 2 cut(s) 196, 735
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 84, 572, 720, 802
HpyCH4III ACNGT 3 cut(s) 163, 296, 837
HpyCH4IV ACGT 2 cut(s) 207, 254
HpyCH4V TGCA 7 cut(s) 23, 47, 129, 248, 269, 418, 551
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 180, 278, 350, 415, 479
HpyF3I CTNAG 5 cut(s) 150, 156, 309, 399, 650
HpySE526I ACGT 2 cut(s) 207, 254
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 699
HspAI GCGC 2 cut(s) 409, 554
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 3 cut(s) 260, 281, 563
LweI GCATC 2 cut(s) 32, 56
MaeII ACGT 2 cut(s) 207, 254
MaeIII GTNAC 4 cut(s) 31, 241, 394, 761
MboII GAAGA 7 cut(s) 69, 72, 75, 629, 766, 809, 817
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 648
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 4 cut(s) 105, 264, 345, 609
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 2 cut(s) 105, 191
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 3 cut(s) 65, 208, 481
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 5 cut(s) 210, 318, 405, 747, 819
MslI CAYNNNNRTG 4 cut(s) 390, 392, 463, 651
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 482
MunI CAATTG 1 cut(s) 345
MwoI GCNNNNNNNGC 6 cut(s) 70, 180, 278, 350, 415, 479
NdeI CATATG 2 cut(s) 12, 460
NlaIII CATG 1 cut(s) 699
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 4 cut(s) 31, 241, 394, 761
OliI CACNNNNGTG 1 cut(s) 651
PceI AGGCCT 2 cut(s) 73, 812
PfeI GAWTC 2 cut(s) 220, 382
PkrI GCNGC 3 cut(s) 250, 271, 553
PleI GAGTC 2 cut(s) 105, 191
PpsI GAGTC 2 cut(s) 105, 191
PshAI GACNNNNGTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 647
PspPI GGNCC 3 cut(s) 182, 539, 703
PstI CTGCAG 1 cut(s) 250
PstNI CAGNNNCTG 2 cut(s) 524, 790
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 4 cut(s) 390, 392, 463, 651
SaqAI TTAA 5 cut(s) 210, 318, 405, 747, 819
SatI GCNGC 3 cut(s) 249, 270, 552
Sau96I GGNCC 3 cut(s) 182, 539, 703
SchI GAGTC 2 cut(s) 105, 191
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 2 cut(s) 32, 56
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 4 cut(s) 390, 392, 463, 651
SmlI CTYRAG 2 cut(s) 142, 827
SmoI CTYRAG 2 cut(s) 142, 827
Sse9I AATT 4 cut(s) 105, 264, 345, 609
SseBI AGGCCT 2 cut(s) 73, 812
StuI AGGCCT 2 cut(s) 73, 812
StyI CCWWGG 4 cut(s) 68, 185, 372, 813
TaaI ACNGT 3 cut(s) 163, 296, 837
TaiI ACGT 2 cut(s) 210, 257
TaqI TCGA 1 cut(s) 109
TasI AATT 4 cut(s) 105, 264, 345, 609
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 2 cut(s) 220, 382
Tru1I TTAA 5 cut(s) 210, 318, 405, 747, 819
Tru9I TTAA 5 cut(s) 210, 318, 405, 747, 819
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 4 cut(s) 31, 241, 394, 761
TseI GCWGC 3 cut(s) 248, 269, 551
Tsp45I GTSAC 4 cut(s) 31, 241, 394, 761
TspDTI ATGAA 3 cut(s) 75, 684, 766
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.