Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006857

Physical Location & Seq

Genomic Coordinates Forward (+)

3628211 .. 3632352

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05660.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGTACCGGACTGTGGCTACAGCCACAACTGCAACCAGGGGCGGATCTCCGACTGATAGCGGGGATTGTGTTGTCACTTTGGATCAAGTTCCACGGTGGAGCAATTCAGAGCATCGTTCTTCCTTGGAATATGACAATGAAGATCCTTCGTTTTCAAATTCGTTTTCAAATTCGTTTTTTCCTGATCCTTTAACTTCCCAATCTGGGGGAGAGAGCAGTAGCAATGGGATAGTCTCAAGATTTCCAGTTGACCATGAAATTAATTCAAAGATATATCTATGGAGAGGGAACCCATGGAATCTTGAAGTTGATGCGGTAGTGAATTCTACAAATGAGAACATGGATGAAGCACATTGTAGTCCTGGTTTGCATGCTGCGGCTGGACCTGGTCTTGCAGAAGAATGTGCAGCACTGGGTGGATGTAGAACAGGGATGGCAAAGGTTACTAAAGCGTATGACCTTCCAGCTAGGAGGGTTATCCATACTGTCGGTCCCAAGTATGCAGTGAAATACCATACTGCTGCAGAAAATGCTCTGAGCCATTGTTATCGTTCTTGCCTTGAACTTCTCATTGAAAATGGGCTGCAAAGCATTGCAATGGGCTGTATATATACAGAAGCTAAGAACTACCCTCGTGAGCCAGCTGCCCATGTTGCTATAAGGACTGTACGACGTTTTCTGGAAAAGCAAAAAGATAAAATCGCAGCTGTTGTTTTTTGTACTACCACATCACTGGATACAGAGATATACAAAAGATTACTTCCGCTTTACTTTCCCCGAGATAAACTTGAAGAGGAGATTGCCTTGTCGAAGCTTCCTGCAGATGTAGGTGATGAAAATGGCGAGACAATTATAGATGAGCGTAAAATCAGAATAAAGCCTTTACCCAAGAAGAATATTCCAAAGCCTCCCCAGGCTCCAGTTGAGCTTCCTGTGAGTGATGTTGGCTTGGTACAAAGGAACTCATCATATTTGGATTCATATTTGGATCCTGCCTTCATGTCCTTAATAAAAGATCCAGATCAGAGACGCAAGGAACAATGGGAAAAAACTGCTCAAGCACAAAGTGGATGGAATTGTGCTAAAATGCTTGGGTTTGGCGAGCTTGGTGGACCTCCATTGTCTGCTGCAGAAGAATACTCGCTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTTAATCTTTCAGAAATTGCAGAAATGAAAATTGTTTACCGAGGTGGGGTTGACAGCGAGGGTCGTCCTGTAATGGTGGTTGTGGGGGCACATTTTCTTTTGCGATGTCTTGATCTAGAACGATTTGTACACTATGTTGTTAAGGAGTTTGAACCCTTAATACAAAAGCCTTATACTATTGTATACTTCCACTCTGCAGCATCTTTACAGCTCCAGCCAGACTTGGGGTGGATGAAAAGGGTACAACAGATACTTGGTCGTAAACACCAACGTAATCTGCATGCAATATACGTCCTTCACCCGACATTTGGGCTGAAGGCTGCAATATTTGCCCTGCAACTGTTCGTGGACAATGTGGTCTGGAAGAAAGTGGTATATGTAGATAGATTACTGCAGCTCTTTCGATATGTTCCTCGTGAGCAGTTGACCATCCCTGACTTTGTGTTCCAGCACGATTTGGAAGTGAACGGTGGGAAGGGTCTTATCGTGGACCCGAGAACCAAGTATGTGTATCATCGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO_2 Macro

Protein Analysis

567

Amino Acids

63.55

Weight (kDa)

7.26

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69340 AT1G69340
fragaria_vesca	FvH4_4g30490 FvH4_4g30490 FvH4_4g30490 FvH4_4g30490
malus_domestica	MD13G1066000.v1.1 MD16G1064800.v1.1
prunus_persica	Prupe.1G282100_v2.0.a1 Prupe.1G282100_v2.0.a1
pyrus_communis	pycom13g05820 pycom16g05660
rosa_chinensis	RchiOBHm_Chr4g0438861
rosa_laevigata	RLG00000006324
rosa_multiflora	Rmu_sc0002505.1_g000021
rosa_roxburghii	Rroxscaffold_5G00379880 Rroxscaffold_7G00178430
rosa_rugosa	Rorug04G0313600 Rorug04G0313700 Rorug04G0313800
rosa_samantha	Rh4AG364600 Rh4BG375700 Rh4CG389800 Rh4DG370400
rosa_wichuraiana	Rw0G007270 Rw0G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1532
AccI	GTMKAC	1 cut(s)	1359
AciI	CCGC	5 cut(s)	42, 60, 314, 377, 764
AclWI	GGATC	7 cut(s)	52, 90, 137, 179, 983, 996, 1010
AcsI	RAATTY	4 cut(s)	157, 169, 322, 1171
AcuI	CTGAAG	1 cut(s)	1511
AdeI	CACNNNGTG	2 cut(s)	416, 1067
AfaI	GTAC	6 cut(s)	5, 669, 721, 954, 1305, 1419
AfiI	CCNNNNNNNGG	6 cut(s)	13, 204, 205, 1222, 1400, 1484
AgsI	TTSAA	9 cut(s)	156, 168, 267, 305, 563, 575, 791, 1152, 1328
AjnI	CCWGG	4 cut(s)	35, 361, 385, 912
AluBI	AGCT	9 cut(s)	467, 620, 644, 707, 814, 928, 1105, 1387, 1573
AluI	AGCT	9 cut(s)	467, 620, 644, 707, 814, 928, 1105, 1387, 1573
Alw26I	GTCTC	3 cut(s)	238, 839, 1021
AlwI	GGATC	7 cut(s)	52, 90, 137, 179, 983, 996, 1010
Ama87I	CYCGRG	2 cut(s)	777, 1669
ApoI	RAATTY	4 cut(s)	157, 169, 322, 1171
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	4 cut(s)	383, 491, 1112, 1666
AsuHPI	GGTGA	2 cut(s)	842, 1466
AvaI	CYCGRG	2 cut(s)	777, 1669
AvaII	GGWCC	4 cut(s)	383, 491, 1112, 1666
BaeGI	GKGCMC	1 cut(s)	1267
BamHI	GGATCC	1 cut(s)	988
BauI	CACGAG	2 cut(s)	633, 1590
BccI	CCATC	3 cut(s)	427, 1065, 1613
BcgI	CGANNNNNNTGC	2 cut(s)	1559, 1593
BciT130I	CCWGG	4 cut(s)	37, 363, 387, 914
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	238, 839, 1021
BfaI	CTAG	2 cut(s)	468, 1292
BfmI	CTRYAG	6 cut(s)	18, 522, 819, 1128, 1371, 1568
BfuI	GTATCC	1 cut(s)	730
Bme1390I	CCNGG	4 cut(s)	37, 363, 387, 914
Bme18I	GGWCC	4 cut(s)	383, 491, 1112, 1666
BmeT110I	CYCGRG	2 cut(s)	777, 1669
BmgT120I	GGNCC	4 cut(s)	383, 491, 1112, 1666
BmiI	GGNNCC	5 cut(s)	290, 493, 918, 990, 1668
BmrFI	CCNGG	4 cut(s)	37, 363, 387, 914
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	3 cut(s)	121, 301, 1385
BmuI	ACTGGG	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	903, 1373
BpuEI	CTTGAG	2 cut(s)	220, 1041
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaJI	CCNNGG	6 cut(s)	36, 92, 123, 293, 912, 1216
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 204, 205, 1222, 1400, 1484
Bse1I	ACTGG	4 cut(s)	245, 417, 738, 920
Bse3DI	GCAATG	3 cut(s)	229, 591, 603
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	4 cut(s)	37, 363, 387, 914
BseDI	CCNNGG	6 cut(s)	36, 92, 123, 293, 912, 1216
BseGI	GGATG	6 cut(s)	349, 425, 438, 1076, 1413, 1605
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	6 cut(s)	13, 204, 205, 1222, 1400, 1484
BseMI	GCAATG	3 cut(s)	229, 591, 603
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	4 cut(s)	245, 417, 738, 920
BseRI	GAGGAG	1 cut(s)	809
BseSI	GKGCMC	1 cut(s)	1267
BsgI	GTGCAG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	1697
BsiEI	CGRYCG	1 cut(s)	1697
BsiHKCI	CYCGRG	2 cut(s)	777, 1669
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	6 cut(s)	13, 204, 205, 1222, 1400, 1484
BsmAI	GTCTC	3 cut(s)	238, 839, 1021
BsmBI	CGTCTC	1 cut(s)	1021
BsmFI	GGGAC	1 cut(s)	477
BsoBI	CYCGRG	2 cut(s)	777, 1669
Bsp1286I	GDGCHC	1 cut(s)	1267
Bsp1407I	TGTACA	1 cut(s)	1303
Bsp143I	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	5 cut(s)	42, 60, 314, 377, 764
BspCNI	CTCAG	1 cut(s)	528
BspLI	GGNNCC	5 cut(s)	290, 493, 918, 990, 1668
BspMAI	CTGCAG	5 cut(s)	526, 823, 1132, 1375, 1572
BspPI	GGATC	7 cut(s)	52, 90, 137, 179, 983, 996, 1010
BsrDI	GCAATG	3 cut(s)	229, 591, 603
BsrGI	TGTACA	1 cut(s)	1303
BsrI	ACTGG	4 cut(s)	245, 417, 738, 920
BssECI	CCNNGG	6 cut(s)	36, 92, 123, 293, 912, 1216
BssMI	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
BssNAI	GTATAC	1 cut(s)	1360
BssSI	CACGAG	2 cut(s)	633, 1590
BssT1I	CCWWGG	2 cut(s)	123, 293
Bst1107I	GTATAC	1 cut(s)	1360
Bst2BI	CACGAG	2 cut(s)	633, 1590
Bst2UI	CCWGG	4 cut(s)	37, 363, 387, 914
Bst4CI	ACNGT	7 cut(s)	13, 96, 487, 667, 1518, 1646, 1698
Bst6I	CTCTTC	1 cut(s)	786
BstAPI	GCANNNNNTGC	2 cut(s)	530, 1505
BstAUI	TGTACA	1 cut(s)	1303
BstC8I	GCNNGC	4 cut(s)	372, 642, 1103, 1458
BstDEI	CTNAG	2 cut(s)	536, 621
BstDSI	CCRYGG	2 cut(s)	92, 293
BstF5I	GGATG	6 cut(s)	349, 425, 438, 1076, 1413, 1605
BstKTI	GATC	8 cut(s)	47, 85, 145, 187, 991, 1018, 1024, 1291
BstMAI	GTCTC	3 cut(s)	238, 839, 1021
BstMBI	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
BstMCI	CGRYCG	1 cut(s)	1697
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 530, 653, 1505
BstNI	CCWGG	4 cut(s)	37, 363, 387, 914
BstNSI	RCATGY	2 cut(s)	374, 1460
BstSCI	CCNGG	4 cut(s)	35, 361, 385, 912
BstSFI	CTRYAG	6 cut(s)	18, 522, 819, 1128, 1371, 1568
BstSLI	GKGCMC	1 cut(s)	1267
BstX2I	RGATCY	4 cut(s)	44, 142, 988, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	4 cut(s)	44, 142, 988, 1015
BstZ17I	GTATAC	1 cut(s)	1360
BsuI	GTATCC	1 cut(s)	730
BtgI	CCRYGG	2 cut(s)	92, 293
BtgZI	GCGATG	1 cut(s)	1294
BtsCI	GGATG	6 cut(s)	349, 425, 438, 1076, 1413, 1605
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	3 cut(s)	410, 510, 731
Cac8I	GCNNGC	4 cut(s)	372, 642, 1103, 1458
Cfr13I	GGNCC	4 cut(s)	383, 491, 1112, 1666
CseI	GACGC	1 cut(s)	1038
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	6 cut(s)	4, 668, 720, 953, 1304, 1418
CviAII	CATG	7 cut(s)	254, 294, 340, 371, 650, 1000, 1457
CviQI	GTAC	6 cut(s)	4, 668, 720, 953, 1304, 1418
DdeI	CTNAG	2 cut(s)	536, 621
DpnI	GATC	8 cut(s)	46, 84, 144, 186, 990, 1017, 1023, 1290
DpnII	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
DraIII	CACNNNGTG	2 cut(s)	416, 1067
DrdI	GACNNNNNNGTC	1 cut(s)	1532
DseDI	GACNNNNNNGTC	1 cut(s)	1532
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	123, 293
Eco47I	GGWCC	4 cut(s)	383, 491, 1112, 1666
Eco57I	CTGAAG	1 cut(s)	1511
Eco88I	CYCGRG	2 cut(s)	777, 1669
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	4 cut(s)	35, 361, 385, 912
EcoT14I	CCWWGG	2 cut(s)	123, 293
ErhI	CCWWGG	2 cut(s)	123, 293
Esp3I	CGTCTC	1 cut(s)	1021
FaeI	CATG	7 cut(s)	257, 297, 343, 374, 653, 1003, 1460
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	7 cut(s)	253, 293, 339, 370, 649, 999, 1456
FauI	CCCGC	1 cut(s)	53
FblI	GTMKAC	1 cut(s)	1359
FokI	GGATG	6 cut(s)	356, 432, 445, 1083, 1420, 1592
FspBI	CTAG	2 cut(s)	468, 1292
GsuI	CTGGAG	2 cut(s)	903, 1373
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	1038
Hin1II	CATG	7 cut(s)	257, 297, 343, 374, 653, 1003, 1460
HincII	GTYRAC	3 cut(s)	250, 1228, 1602
HindII	GTYRAC	3 cut(s)	250, 1228, 1602
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	2 cut(s)	298, 977
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	2 cut(s)	842, 1466
Hpy188I	TCNGA	6 cut(s)	51, 109, 537, 872, 1026, 1189
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	6 cut(s)	156, 470, 1006, 1481, 1486, 1645
HpyCH4III	ACNGT	7 cut(s)	13, 96, 487, 667, 1518, 1646, 1698
HpyCH4IV	ACGT	3 cut(s)	673, 1447, 1467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 530, 653, 1505
HpyF3I	CTNAG	2 cut(s)	536, 621
HpySE526I	ACGT	3 cut(s)	673, 1447, 1467
Hsp92II	CATG	7 cut(s)	257, 297, 343, 374, 653, 1003, 1460
Kzo9I	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
LmnI	GCTCC	3 cut(s)	99, 922, 1392
LweI	GCATC	3 cut(s)	121, 301, 1385
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	2 cut(s)	468, 1292
MaeII	ACGT	3 cut(s)	673, 1447, 1467
MaeIII	GTNAC	2 cut(s)	73, 442
MalI	GATC	8 cut(s)	46, 84, 144, 186, 990, 1017, 1023, 1290
MboI	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
MboII	GAAGA	7 cut(s)	111, 152, 410, 803, 904, 1145, 1552
MflI	RGATCY	4 cut(s)	44, 142, 988, 1015
MhlI	GDGCHC	1 cut(s)	1267
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	9 cut(s)	278, 465, 642, 787, 918, 1125, 1211, 1228, 1599
MseI	TTAA	6 cut(s)	191, 261, 1007, 1179, 1317, 1334
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	644, 707
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	4 cut(s)	37, 363, 387, 914
MvaI	CCWGG	4 cut(s)	37, 363, 387, 914
MwoI	GCNNNNNNNGC	4 cut(s)	29, 530, 653, 1505
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
NlaIII	CATG	7 cut(s)	257, 297, 343, 374, 653, 1003, 1460
NlaIV	GGNNCC	5 cut(s)	290, 493, 918, 990, 1668
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	374, 1460
PaeI	GCATGC	2 cut(s)	374, 1460
PfeI	GAWTC	2 cut(s)	298, 977
PflFI	GACNNNGTC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	4 cut(s)	35, 361, 385, 912
PspGI	CCWGG	4 cut(s)	35, 361, 385, 912
PspN4I	GGNNCC	5 cut(s)	290, 493, 918, 990, 1668
PspPI	GGNCC	4 cut(s)	383, 491, 1112, 1666
PsrI	GAACNNNNNNTAC	4 cut(s)	1287, 1319, 1320, 1352
PstI	CTGCAG	5 cut(s)	526, 823, 1132, 1375, 1572
PsuI	RGATCY	4 cut(s)	44, 142, 988, 1015
PsyI	GACNNNGTC	1 cut(s)	387
PvuII	CAGCTG	2 cut(s)	644, 707
RsaI	GTAC	6 cut(s)	5, 669, 721, 954, 1305, 1419
RsaNI	GTAC	6 cut(s)	4, 668, 720, 953, 1304, 1418
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	6 cut(s)	191, 261, 1007, 1179, 1317, 1334
Sau3AI	GATC	8 cut(s)	44, 82, 142, 184, 988, 1015, 1021, 1288
Sau96I	GGNCC	4 cut(s)	383, 491, 1112, 1666
ScrFI	CCNGG	4 cut(s)	37, 363, 387, 914
SduI	GDGCHC	1 cut(s)	1267
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	3 cut(s)	121, 301, 1385
SfcI	CTRYAG	6 cut(s)	18, 522, 819, 1128, 1371, 1568
SinI	GGWCC	4 cut(s)	383, 491, 1112, 1666
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	235, 1056
SmoI	CTYRAG	2 cut(s)	235, 1056
SphI	GCATGC	2 cut(s)	374, 1460
SsiI	CCGC	5 cut(s)	42, 60, 314, 377, 764
SspI	AATATT	2 cut(s)	898, 1503
SspMI	CTAG	2 cut(s)	468, 1292
StyD4I	CCNGG	4 cut(s)	35, 361, 385, 912
StyI	CCWWGG	2 cut(s)	123, 293
TaaI	ACNGT	7 cut(s)	13, 96, 487, 667, 1518, 1646, 1698
TaiI	ACGT	3 cut(s)	676, 1450, 1470
TaqI	TCGA	3 cut(s)	809, 1579, 1693
TaqII	GACCGA	1 cut(s)	479
TatI	WGTACW	2 cut(s)	719, 1303
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	298, 977
Tru1I	TTAA	6 cut(s)	191, 261, 1007, 1179, 1317, 1334
Tru9I	TTAA	6 cut(s)	191, 261, 1007, 1179, 1317, 1334
TscAI	CASTG	3 cut(s)	417, 510, 738
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	9 cut(s)	153, 270, 360, 849, 969, 988, 1136, 1217, 1424
TspRI	CASTG	3 cut(s)	417, 510, 738
Tth111I	GACNNNGTC	1 cut(s)	387
VpaK11BI	GGWCC	4 cut(s)	383, 491, 1112, 1666
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	4 cut(s)	157, 169, 322, 1171
XbaI	TCTAGA	1 cut(s)	1291
XceI	RCATGY	2 cut(s)	374, 1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1401
XmiI	GTMKAC	1 cut(s)	1359
XspI	CTAG	2 cut(s)	468, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.