Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006708

Physical Location & Seq

Genomic Coordinates Reverse (-)

35167448 .. 35169639

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGACACGTAAGCGAGCACCATGAAGCAACGGATGGCTTGGTGAAACTGTTGACGAAGGCGAACCACGATCTCACGGTGGTTCAGCACAGGCTCGAGAGGGAGTTCCAGCAAATCTACCCCGAAAATGCAAACCCGATGAAGCTGGTTTCAAGGATAAAGAAGATTCAAGAAGAATTGTCGACCTTGGAAGAGCAATGCCGTGAACTTCTTTCAGCCAAACAGGATTTGATTGACCAGGCTAGGACGACTCTGGTTGGGAACAGAAATCTAGTGCAGCGGATGGAGGCGTCGATGGGAATTTCCCCCAACACTGATTCTGAAGATTCTGCTTTTGCTAACTTCAATCAGATCATTGATGAGTGGACGGTTCAAGTCAGATCAAAAACAGGGGATGAAAAGCACGATTCAGATTCTGAGGATATTAATCAATTACTCTTCTCAGCTATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA2

Protein Analysis

152

Amino Acids

17.2

Weight (kDa)

4.99

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24970
fragaria_vesca	FvH4_2g41341 FvH4_2g41341 FvH4_2g41341
malus_domestica	MD08G1052100.v1.1 MD15G1043400.v1.1
prunus_persica	Prupe.1G396800_v2.0.a1 Prupe.1G396800_v2.0.a1 Prupe.1G396800_v2.0.a1
pyrus_communis	pycom08g04350 pycom15g04030
rosa_chinensis	RchiOBHm_Chr6g0299191 RchiOBHm_Chr7g0186961
rosa_laevigata	RLG00000011455
rosa_multiflora	Rmu_co8351649.1_g000001 Rmu_sc0001434.1_g000013
rosa_roxburghii	Rroxscaffold_7G00168930
rosa_rugosa	Rorug06G0286100
rosa_samantha	Rh6AG397000 Rh6BG405700 Rh6CG411800 Rh6DG398500 Rh7AG083800 Rh7CG084800 Rh7DG085700
rosa_wichuraiana	Rw6G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	4 cut(s)	153, 170, 346, 374
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	2 cut(s)	145, 446
AluI	AGCT	2 cut(s)	145, 446
Alw21I	GWGCWC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	300
AseI	ATTAAT	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	29, 277, 289
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	239
BfaI	CTAG	2 cut(s)	243, 272
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	40, 288, 400
BseJI	GATNNNNATC	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	408, 456
BseXI	GCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	70, 351, 380
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	409, 455
BspQI	GCTCTTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	70, 351, 380
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	51, 79, 370
Bst6I	CTCTTC	2 cut(s)	186, 443
BstACI	GRCGYC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	417, 442
BstF5I	GGATG	3 cut(s)	40, 288, 400
BstKTI	GATC	3 cut(s)	73, 354, 383
BstMBI	GATC	3 cut(s)	70, 351, 380
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	40, 288, 400
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	416
CseI	GACGC	1 cut(s)	279
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	6 cut(s)	39, 94, 145, 218, 242, 446
CviKI_1	RGCY	6 cut(s)	39, 94, 145, 218, 242, 446
DdeI	CTNAG	2 cut(s)	417, 442
DpnI	GATC	3 cut(s)	72, 353, 382
DpnII	GATC	3 cut(s)	70, 351, 380
Eam1104I	CTCTTC	2 cut(s)	186, 443
EarI	CTCTTC	2 cut(s)	186, 443
Eco130I	CCWWGG	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 449
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	3 cut(s)	47, 295, 407
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	2 cut(s)	243, 272
GluI	GCNGC	1 cut(s)	278
HgaI	GACGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	54, 183
HindII	GTYRAC	2 cut(s)	54, 183
HinfI	GANTC	6 cut(s)	166, 250, 317, 326, 407, 413
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	4 cut(s)	54, 183, 206, 366
Hpy188I	TCNGA	5 cut(s)	322, 351, 380, 412, 418
Hpy188III	TCNNGA	2 cut(s)	97, 170
Hpy8I	GTNNAC	4 cut(s)	54, 183, 206, 366
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	51, 79, 370
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	131, 277
HpyF3I	CTNAG	2 cut(s)	417, 442
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	70, 351, 380
LguI	GCTCTTC	1 cut(s)	186
LpnPI	CCDG	8 cut(s)	76, 122, 131, 209, 224, 239, 251, 375
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	243, 272
MaeII	ACGT	1 cut(s)	9
MalI	GATC	3 cut(s)	72, 353, 382
MboI	GATC	3 cut(s)	70, 351, 380
MboII	GAAGA	5 cut(s)	175, 185, 203, 335, 430
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	176, 300, 431
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	93, 280, 412
MseI	TTAA	2 cut(s)	426, 454
MspA1I	CMGCKG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	70, 351, 380
NlaIII	CATG	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	5 cut(s)	166, 317, 326, 407, 413
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	426, 454
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	70, 351, 380
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	12, 147, 188, 448
SfcI	CTRYAG	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	176, 300, 431
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	243, 272
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	51, 79, 370
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	96, 182, 293
TasI	AATT	3 cut(s)	176, 300, 431
TfiI	GAWTC	5 cut(s)	166, 317, 326, 407, 413
Tru1I	TTAA	2 cut(s)	426, 454
Tru9I	TTAA	2 cut(s)	426, 454
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	39, 155, 411
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	2 cut(s)	243, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.