Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006708

Physical Location & Seq

Genomic Coordinates Reverse (-)

2454273 .. 2455019

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGACACGTAAGCGAACACCACGAAGCGACGGACGGCTTGGTGAAGCTGCTGACGAAAGCGAACCACGATCTGACGGTGGTTCAGCACCGGCTCGAGAGGGAGTTCCAGCAAATCTACCCGGACAATGCCAACCCGATGAAGCTGGTTTCGAGGATAAAGAAGATTCAAGAAGAATTGTCGACCTTGGAAGATCACTGCCGCCAACTTCTCTCAGCCAAACAGGATTTGATTGATAAGGCGAGGACGACTCTGGTTGGGAACAGAAATCAGTTGCAGCGGATGGAGACGTCGATGGGAGTTTTCGCCGACGCTGATTCGGATGATTCTGCTTTTGCTAACTTCAATCAGCGGTACCTATGTGAACGGTTGTCTAGTTTTCCAGATGGTGTTCGAGTATTTGCACCATTTTCCAGCAAGCAACCAAGATTAAACACTATTGCTAGGCAATGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA2

Protein Analysis

153

Amino Acids

17.42

Weight (kDa)

7.01

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24970
fragaria_vesca	FvH4_2g41341 FvH4_2g41341 FvH4_2g41341
malus_domestica	MD08G1052100.v1.1 MD15G1043400.v1.1
prunus_persica	Prupe.1G396800_v2.0.a1 Prupe.1G396800_v2.0.a1 Prupe.1G396800_v2.0.a1
pyrus_communis	pycom08g04350 pycom15g04030
rosa_chinensis	RchiOBHm_Chr6g0299191 RchiOBHm_Chr7g0186961
rosa_laevigata	RLG00000011455
rosa_multiflora	Rmu_co8351649.1_g000001 Rmu_sc0001434.1_g000013
rosa_roxburghii	Rroxscaffold_7G00168930
rosa_rugosa	Rorug06G0286100
rosa_samantha	Rh6AG397000 Rh6BG405700 Rh6CG411800 Rh6DG398500 Rh7AG083800 Rh7CG084800 Rh7DG085700
rosa_wichuraiana	Rw6G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	3 cut(s)	202, 280, 352
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	170, 346
AluBI	AGCT	2 cut(s)	49, 145
AluI	AGCT	2 cut(s)	49, 145
Alw26I	GTCTC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	49, 277
Asp718I	GGTACC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	95
BaeI	ACNNNNGTAYC	2 cut(s)	346, 379
BanI	GGYRCC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	36, 289
BccI	CCATC	3 cut(s)	277, 289, 380
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	375, 444
BisI	GCNGC	3 cut(s)	50, 202, 278
BlsI	GCNGC	3 cut(s)	51, 203, 279
Bme1390I	CCNGG	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	288, 328
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	36, 289
BshNI	GGYRCC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	91, 122
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	281
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	70, 193
BspACI	CCGC	3 cut(s)	202, 280, 352
BspCNI	CTCAG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	70, 193
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	79, 369
BstACI	GRCGYC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	288, 328
BstKTI	GATC	2 cut(s)	73, 196
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	70, 193
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	36, 289
BtsCI	GGATG	2 cut(s)	288, 328
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	90
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	355
CviJI	RGCY	5 cut(s)	39, 49, 94, 145, 218
CviKI_1	RGCY	5 cut(s)	39, 49, 94, 145, 218
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	2 cut(s)	72, 195
DpnII	GATC	2 cut(s)	70, 193
Eco130I	CCWWGG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	281
FaiI	YATR	1 cut(s)	361
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	50, 202, 278
FokI	GGATG	2 cut(s)	295, 335
Fsp4HI	GCNGC	3 cut(s)	50, 202, 278
FspBI	CTAG	2 cut(s)	375, 444
GluI	GCNGC	3 cut(s)	50, 202, 278
HapII	CCGG	2 cut(s)	91, 122
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	166, 250, 317, 326
HpaII	CCGG	2 cut(s)	91, 122
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	183, 365
Hpy188I	TCNGA	2 cut(s)	75, 322
Hpy188III	TCNNGA	3 cut(s)	97, 170, 383
Hpy8I	GTNNAC	2 cut(s)	183, 365
Hpy99I	CGWCG	3 cut(s)	34, 295, 314
HpyCH4III	ACNGT	2 cut(s)	79, 369
HpyCH4IV	ACGT	2 cut(s)	9, 290
HpyCH4V	TGCA	2 cut(s)	277, 404
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	2 cut(s)	9, 290
Hsp92I	GRCGYC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	70, 193
LpnPI	CCDG	8 cut(s)	104, 122, 131, 135, 209, 239, 396, 427
Lsp1109I	GCAGC	2 cut(s)	36, 289
MaeI	CTAG	2 cut(s)	375, 444
MaeII	ACGT	2 cut(s)	9, 290
MalI	GATC	2 cut(s)	72, 195
MboI	GATC	2 cut(s)	70, 193
MboII	GAAGA	3 cut(s)	175, 185, 203
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	93, 147, 237
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	280, 352
MspI	CCGG	2 cut(s)	91, 122
MspR9I	CCNGG	1 cut(s)	122
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	70, 193
NlaIV	GGNNCC	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	166, 317, 326
PkrI	GCNGC	3 cut(s)	51, 203, 279
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	3 cut(s)	50, 202, 278
Sau3AI	GATC	2 cut(s)	70, 193
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	6 cut(s)	12, 51, 147, 188, 293, 360
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	202, 280, 352
SspMI	CTAG	2 cut(s)	375, 444
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	79, 369
TaiI	ACGT	2 cut(s)	12, 293
TaqI	TCGA	5 cut(s)	96, 152, 182, 293, 394
TasI	AATT	1 cut(s)	176
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	166, 317, 326
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	49, 277
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	2 cut(s)	375, 444
ZraI	GACGTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.