Histidine kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10720 |
| fragaria_vesca | FvH4_2g37120 FvH4_2g37120 FvH4_2g37120 |
| malus_domestica | MD08G1047400.v1.1 MD15G1046500.v1.1 |
| prunus_persica | Prupe.1G400900_v2.0.a1 Prupe.1G400900_v2.0.a1 Prupe.1G400900_v2.0.a1 |
| pyrus_communis | pycom08g03990 pycom15g04420 |
| rosa_chinensis | RchiOBHm_Chr6g0304671 |
| rosa_laevigata | RLG00000010960 |
| rosa_multiflora | Rmu_sc0003341.1_g000001 Rmu_sc0005532.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00163610 |
| rosa_rugosa | Rorug06G0332800 |
| rosa_samantha | Rh6AG445400 Rh6BG456600 Rh6CG458200 Rh6DG445400 |
| rosa_wichuraiana | Rw6G038730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 47 |
| AatII | GACGTC | 1 cut(s) | 1236 |
| Acc36I | ACCTGC | 1 cut(s) | 880 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 908 |
| AccI | GTMKAC | 1 cut(s) | 1964 |
| AciI | CCGC | 7 cut(s) | 384, 733, 1377, 1418, 1959, 2363, 2626 |
| AclWI | GGATC | 4 cut(s) | 1541, 2015, 2127, 2140 |
| AcoI | YGGCCR | 2 cut(s) | 712, 1337 |
| AcsI | RAATTY | 3 cut(s) | 1499, 2209, 2877 |
| AcuI | CTGAAG | 5 cut(s) | 90, 674, 931, 1230, 2241 |
| AcyI | GRCGYC | 1 cut(s) | 1233 |
| AfaI | GTAC | 6 cut(s) | 515, 687, 1362, 1980, 1988, 2530 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 367, 908, 1163, 1294, 1335, 1990 |
| AflIII | ACRYGT | 3 cut(s) | 132, 1411, 2489 |
| AgeI | ACCGGT | 1 cut(s) | 360 |
| AjnI | CCWGG | 1 cut(s) | 115 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1503, 1535 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 285, 317 |
| Alw21I | GWGCWC | 2 cut(s) | 333, 360 |
| AlwI | GGATC | 4 cut(s) | 1541, 2015, 2127, 2140 |
| AoxI | GGCC | 7 cut(s) | 65, 712, 816, 1337, 1698, 2632, 2737 |
| ApaI | GGGCCC | 1 cut(s) | 1702 |
| ApeKI | GCWGC | 4 cut(s) | 1373, 2057, 2462, 2792 |
| ApoI | RAATTY | 3 cut(s) | 1499, 2209, 2877 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2915, 2947 |
| AseI | ATTAAT | 1 cut(s) | 2595 |
| AsiGI | ACCGGT | 1 cut(s) | 360 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 98, 603, 1647 |
| AspA2I | CCTAGG | 1 cut(s) | 1694 |
| AspLEI | GCGC | 3 cut(s) | 396, 1773, 2921 |
| AspS9I | GGNCC | 6 cut(s) | 816, 1258, 1661, 1698, 1699, 2142 |
| AsuC2I | CCSGG | 2 cut(s) | 814, 1165 |
| AsuHPI | GGTGA | 6 cut(s) | 621, 1018, 1146, 1577, 1667, 2617 |
| AvaII | GGWCC | 3 cut(s) | 1258, 1661, 2142 |
| AvrII | CCTAGG | 1 cut(s) | 1694 |
| BaeGI | GKGCMC | 1 cut(s) | 1702 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BalI | TGGCCA | 1 cut(s) | 714 |
| BamHI | GGATCC | 1 cut(s) | 2132 |
| BanII | GRGCYC | 3 cut(s) | 221, 333, 1702 |
| BbsI | GAAGAC | 2 cut(s) | 39, 937 |
| Bbv12I | GWGCWC | 2 cut(s) | 333, 360 |
| BbvI | GCAGC | 4 cut(s) | 1385, 2044, 2474, 2779 |
| BccI | CCATC | 9 cut(s) | 7, 723, 982, 1018, 1558, 2245, 2704, 2729, 2938 |
| BceAI | ACGGC | 2 cut(s) | 257, 2654 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2915, 2949 |
| BciT130I | CCWGG | 1 cut(s) | 117 |
| BclI | TGATCA | 4 cut(s) | 1000, 1482, 1636, 1855 |
| BcnI | CCSGG | 2 cut(s) | 814, 1165 |
| BfaI | CTAG | 6 cut(s) | 230, 296, 1695, 1892, 1944, 2409 |
| BfmI | CTRYAG | 4 cut(s) | 168, 1364, 1371, 2689 |
| BfoI | RGCGCY | 1 cut(s) | 397 |
| BfuAI | ACCTGC | 1 cut(s) | 880 |
| BisI | GCNGC | 5 cut(s) | 1374, 1377, 2058, 2463, 2793 |
| BlnI | CCTAGG | 1 cut(s) | 1694 |
| BlsI | GCNGC | 5 cut(s) | 1375, 1378, 2059, 2464, 2794 |
| BmcAI | AGTACT | 1 cut(s) | 2530 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 814, 1165 |
| Bme18I | GGWCC | 3 cut(s) | 1258, 1661, 2142 |
| BmgT120I | GGNCC | 6 cut(s) | 816, 1258, 1661, 1698, 1699, 2142 |
| BmiI | GGNNCC | 8 cut(s) | 162, 817, 939, 1700, 1701, 1746, 2134, 2144 |
| BmrFI | CCNGG | 3 cut(s) | 117, 814, 1165 |
| BmrI | ACTGGG | 2 cut(s) | 259, 2794 |
| BmsI | GCATC | 8 cut(s) | 76, 1388, 1562, 1621, 2044, 2503, 2779, 2824 |
| BmuI | ACTGGG | 2 cut(s) | 259, 2794 |
| BpiI | GAAGAC | 2 cut(s) | 39, 937 |
| BpmI | CTGGAG | 1 cut(s) | 2337 |
| Bpu10I | CCTNAGC | 2 cut(s) | 305, 1034 |
| BpuEI | CTTGAG | 3 cut(s) | 317, 819, 2407 |
| BpuMI | CCSGG | 2 cut(s) | 814, 1165 |
| BsaAI | YACGTR | 1 cut(s) | 1537 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1635 |
| BsaHI | GRCGYC | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 1 cut(s) | 2118 |
| BsaJI | CCNNGG | 7 cut(s) | 813, 1062, 1164, 1293, 1401, 1694, 2482 |
| BsaWI | WCCGGW | 1 cut(s) | 360 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 533, 563, 1242, 1272 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 367, 908, 1163, 1294, 1335, 1990 |
| Bse118I | RCCGGY | 2 cut(s) | 360, 818 |
| Bse1I | ACTGG | 6 cut(s) | 254, 521, 632, 2089, 2782, 2789 |
| Bse3DI | GCAATG | 4 cut(s) | 537, 1382, 1495, 2886 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1635 |
| BseBI | CCWGG | 1 cut(s) | 117 |
| BseDI | CCNNGG | 7 cut(s) | 813, 1062, 1164, 1293, 1401, 1694, 2482 |
| BseJI | GATNNNNATC | 1 cut(s) | 1635 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 367, 908, 1163, 1294, 1335, 1990 |
| BseMI | GCAATG | 4 cut(s) | 537, 1382, 1495, 2886 |
| BseMII | CTCAG | 7 cut(s) | 298, 486, 1173, 1734, 2283, 2787, 2904 |
| BseNI | ACTGG | 6 cut(s) | 254, 521, 632, 2089, 2782, 2789 |
| BseRI | GAGGAG | 5 cut(s) | 155, 788, 1115, 1754, 2261 |
| BseSI | GKGCMC | 1 cut(s) | 1702 |
| BseXI | GCAGC | 4 cut(s) | 1385, 2044, 2474, 2779 |
| BseYI | CCCAGC | 1 cut(s) | 1702 |
| BshFI | GGCC | 7 cut(s) | 67, 714, 818, 1339, 1700, 2634, 2739 |
| BshTI | ACCGGT | 1 cut(s) | 360 |
| BsiHKAI | GWGCWC | 2 cut(s) | 333, 360 |
| BsiSI | CCGG | 6 cut(s) | 361, 813, 819, 1164, 1336, 2136 |
| BslFI | GGGAC | 1 cut(s) | 631 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 367, 908, 1163, 1294, 1335, 1990 |
| BsmBI | CGTCTC | 1 cut(s) | 191 |
| BsmFI | GGGAC | 1 cut(s) | 631 |
| BsmI | GAATGC | 4 cut(s) | 233, 603, 700, 1594 |
| BsnI | GGCC | 7 cut(s) | 67, 714, 818, 1339, 1700, 2634, 2739 |
| Bso31I | GGTCTC | 1 cut(s) | 2118 |
| Bsp120I | GGGCCC | 1 cut(s) | 1698 |
| Bsp1286I | GDGCHC | 4 cut(s) | 221, 333, 360, 1702 |
| BspACI | CCGC | 7 cut(s) | 384, 733, 1377, 1418, 1959, 2363, 2626 |
| BspANI | GGCC | 7 cut(s) | 67, 714, 818, 1339, 1700, 2634, 2739 |
| BspCNI | CTCAG | 7 cut(s) | 297, 487, 1174, 1733, 2284, 2788, 2905 |
| BspHI | TCATGA | 3 cut(s) | 1141, 1507, 2050 |
| BspLI | GGNNCC | 8 cut(s) | 162, 817, 939, 1700, 1701, 1746, 2134, 2144 |
| BspMAI | CTGCAG | 1 cut(s) | 1375 |
| BspMI | ACCTGC | 1 cut(s) | 880 |
| BspPI | GGATC | 4 cut(s) | 1541, 2015, 2127, 2140 |
| BspQI | GCTCTTC | 2 cut(s) | 226, 348 |
| BspTNI | GGTCTC | 1 cut(s) | 2118 |
| BsrDI | GCAATG | 4 cut(s) | 537, 1382, 1495, 2886 |
| BsrFI | RCCGGY | 2 cut(s) | 360, 818 |
| BsrI | ACTGG | 6 cut(s) | 254, 521, 632, 2089, 2782, 2789 |
| BssAI | RCCGGY | 2 cut(s) | 360, 818 |
| BssECI | CCNNGG | 7 cut(s) | 813, 1062, 1164, 1293, 1401, 1694, 2482 |
| BssNI | GRCGYC | 1 cut(s) | 1233 |
| BssT1I | CCWWGG | 5 cut(s) | 1062, 1293, 1401, 1694, 2482 |
| Bst2UI | CCWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 7 cut(s) | 508, 1606, 1655, 1762, 1939, 2690, 2821 |
| Bst6I | CTCTTC | 3 cut(s) | 226, 348, 1554 |
| BstACI | GRCGYC | 1 cut(s) | 1233 |
| BstBAI | YACGTR | 1 cut(s) | 1537 |
| BstC8I | GCNNGC | 6 cut(s) | 264, 311, 820, 1113, 1128, 2676 |
| BstEII | GGTNACC | 1 cut(s) | 867 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1292 |
| BstH2I | RGCGCY | 1 cut(s) | 397 |
| BstHHI | GCGC | 3 cut(s) | 396, 1773, 2921 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1117, 1222, 1859, 2675, 2801, 2821, 2897 |
| BstNI | CCWGG | 1 cut(s) | 117 |
| BstNSI | RCATGY | 6 cut(s) | 136, 1361, 1415, 1843, 2493, 2725 |
| BstPI | GGTNACC | 1 cut(s) | 867 |
| BstSCI | CCNGG | 3 cut(s) | 115, 812, 1163 |
| BstSFI | CTRYAG | 4 cut(s) | 168, 1364, 1371, 2689 |
| BstSLI | GKGCMC | 1 cut(s) | 1702 |
| BstV1I | GCAGC | 4 cut(s) | 1385, 2044, 2474, 2779 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 937 |
| BstX2I | RGATCY | 2 cut(s) | 1546, 2132 |
| BstYI | RGATCY | 2 cut(s) | 1546, 2132 |
| BsuRI | GGCC | 7 cut(s) | 67, 714, 818, 1339, 1700, 2634, 2739 |
| BtgZI | GCGATG | 1 cut(s) | 2906 |
| BtsI | GCAGTG | 1 cut(s) | 1954 |
| BtsIMutI | CAGTG | 7 cut(s) | 247, 639, 1728, 1855, 1944, 1954, 2686 |
| BveI | ACCTGC | 1 cut(s) | 880 |
| Cac8I | GCNNGC | 6 cut(s) | 264, 311, 820, 1113, 1128, 2676 |
| CciI | TCATGA | 3 cut(s) | 1141, 1507, 2050 |
| CfoI | GCGC | 3 cut(s) | 396, 1773, 2921 |
| Cfr10I | RCCGGY | 2 cut(s) | 360, 818 |
| Cfr13I | GGNCC | 6 cut(s) | 816, 1258, 1661, 1698, 1699, 2142 |
| CseI | GACGC | 4 cut(s) | 173, 1736, 2617, 2981 |
| Csp6I | GTAC | 6 cut(s) | 514, 686, 1361, 1979, 1987, 2529 |
| CspAI | ACCGGT | 1 cut(s) | 360 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1186, 1221 |
| CviQI | GTAC | 6 cut(s) | 514, 686, 1361, 1979, 1987, 2529 |
| DraI | TTTAAA | 1 cut(s) | 1831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 47 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 47 |
| EaeI | YGGCCR | 2 cut(s) | 712, 1337 |
| Eam1104I | CTCTTC | 3 cut(s) | 226, 348, 1554 |
| EarI | CTCTTC | 3 cut(s) | 226, 348, 1554 |
| EciI | GGCGGA | 1 cut(s) | 399 |
| Ecl136II | GAGCTC | 1 cut(s) | 331 |
| Eco130I | CCWWGG | 5 cut(s) | 1062, 1293, 1401, 1694, 2482 |
| Eco24I | GRGCYC | 3 cut(s) | 221, 333, 1702 |
| Eco31I | GGTCTC | 1 cut(s) | 2118 |
| Eco47I | GGWCC | 3 cut(s) | 1258, 1661, 2142 |
| Eco53kI | GAGCTC | 1 cut(s) | 331 |
| Eco57I | CTGAAG | 5 cut(s) | 90, 674, 931, 1230, 2241 |
| Eco91I | GGTNACC | 1 cut(s) | 867 |
| EcoICRI | GAGCTC | 1 cut(s) | 331 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1292 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1698, 1699, 2142 |
| EcoO65I | GGTNACC | 1 cut(s) | 867 |
| EcoRI | GAATTC | 1 cut(s) | 2877 |
| EcoRII | CCWGG | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 5 cut(s) | 1062, 1293, 1401, 1694, 2482 |
| EcoT22I | ATGCAT | 3 cut(s) | 537, 2839, 2908 |
| EcoT38I | GRGCYC | 3 cut(s) | 221, 333, 1702 |
| ErhI | CCWWGG | 5 cut(s) | 1062, 1293, 1401, 1694, 2482 |
| Esp3I | CGTCTC | 1 cut(s) | 191 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 173, 205, 2979, 3011 |
| FaqI | GGGAC | 1 cut(s) | 631 |
| FauI | CCCGC | 1 cut(s) | 1952 |
| FbaI | TGATCA | 4 cut(s) | 1000, 1482, 1636, 1855 |
| FblI | GTMKAC | 1 cut(s) | 1964 |
| Fnu4HI | GCNGC | 5 cut(s) | 1374, 1377, 2058, 2463, 2793 |
| FriOI | GRGCYC | 3 cut(s) | 221, 333, 1702 |
| Fsp4HI | GCNGC | 5 cut(s) | 1374, 1377, 2058, 2463, 2793 |
| FspBI | CTAG | 6 cut(s) | 230, 296, 1695, 1892, 1944, 2409 |
| GlaI | GCGC | 3 cut(s) | 395, 1772, 2920 |
| GluI | GCNGC | 5 cut(s) | 1374, 1377, 2058, 2463, 2793 |
| GsaI | CCCAGC | 1 cut(s) | 1706 |
| GsuI | CTGGAG | 1 cut(s) | 2337 |
| HaeII | RGCGCY | 1 cut(s) | 397 |
| HaeIII | GGCC | 7 cut(s) | 67, 714, 818, 1339, 1700, 2634, 2739 |
| HapII | CCGG | 6 cut(s) | 361, 813, 819, 1164, 1336, 2136 |
| HgaI | GACGC | 4 cut(s) | 173, 1736, 2617, 2981 |
| HhaI | GCGC | 3 cut(s) | 396, 1773, 2921 |
| Hin1I | GRCGYC | 1 cut(s) | 1233 |
| Hin6I | GCGC | 3 cut(s) | 394, 1771, 2919 |
| HinP1I | GCGC | 3 cut(s) | 394, 1771, 2919 |
| HincII | GTYRAC | 1 cut(s) | 1931 |
| HindII | GTYRAC | 1 cut(s) | 1931 |
| HindIII | AAGCTT | 1 cut(s) | 1031 |
| HpaII | CCGG | 6 cut(s) | 361, 813, 819, 1164, 1336, 2136 |
| HphI | GGTGA | 6 cut(s) | 621, 1018, 1146, 1577, 1667, 2617 |
| Hpy166II | GTNNAC | 6 cut(s) | 514, 1726, 1931, 1965, 2183, 2719 |
| Hpy8I | GTNNAC | 6 cut(s) | 514, 1726, 1931, 1965, 2183, 2719 |
| Hpy99I | CGWCG | 1 cut(s) | 2005 |
| HpyAV | CCTTC | 9 cut(s) | 66, 841, 1271, 1400, 1505, 1637, 1830, 2835, 2874 |
| HpyCH4III | ACNGT | 7 cut(s) | 508, 1606, 1655, 1762, 1939, 2690, 2821 |
| HpyCH4IV | ACGT | 4 cut(s) | 1233, 1536, 2000, 2761 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1117, 1222, 1859, 2675, 2801, 2821, 2897 |
| HpySE526I | ACGT | 4 cut(s) | 1233, 1536, 2000, 2761 |
| Hsp92I | GRCGYC | 1 cut(s) | 1233 |
| HspAI | GCGC | 3 cut(s) | 394, 1771, 2919 |
| KroI | GCCGGC | 1 cut(s) | 818 |
| KroNI | GCCGGC | 1 cut(s) | 820 |
| Ksp22I | TGATCA | 4 cut(s) | 1000, 1482, 1636, 1855 |
| LguI | GCTCTTC | 2 cut(s) | 226, 348 |
| LmnI | GCTCC | 4 cut(s) | 80, 193, 448, 937 |
| Lsp1109I | GCAGC | 4 cut(s) | 1385, 2044, 2474, 2779 |
| LweI | GCATC | 8 cut(s) | 76, 1388, 1562, 1621, 2044, 2503, 2779, 2824 |
| MaeI | CTAG | 6 cut(s) | 230, 296, 1695, 1892, 1944, 2409 |
| MaeII | ACGT | 4 cut(s) | 1233, 1536, 2000, 2761 |
| MaeIII | GTNAC | 8 cut(s) | 145, 867, 994, 1655, 2154, 2324, 2605, 2693 |
| MfeI | CAATTG | 3 cut(s) | 966, 1907, 2280 |
| MflI | RGATCY | 2 cut(s) | 1546, 2132 |
| MhlI | GDGCHC | 4 cut(s) | 221, 333, 360, 1702 |
| MlsI | TGGCCA | 1 cut(s) | 714 |
| MluNI | TGGCCA | 1 cut(s) | 714 |
| MlyI | GAGTC | 5 cut(s) | 1310, 2332, 2414, 2513, 2942 |
| MmeI | TCCRAC | 5 cut(s) | 117, 321, 531, 1299, 2119 |
| Mox20I | TGGCCA | 1 cut(s) | 714 |
| Mph1103I | ATGCAT | 3 cut(s) | 537, 2839, 2908 |
| MroNI | GCCGGC | 1 cut(s) | 818 |
| MroXI | GAANNNNTTC | 3 cut(s) | 98, 603, 1647 |
| MscI | TGGCCA | 1 cut(s) | 714 |
| MseI | TTAA | 5 cut(s) | 825, 1683, 1830, 2595, 2985 |
| MslI | CAYNNNNRTG | 5 cut(s) | 41, 986, 2016, 2708, 2891 |
| Msp20I | TGGCCA | 1 cut(s) | 714 |
| MspI | CCGG | 6 cut(s) | 361, 813, 819, 1164, 1336, 2136 |
| MspR9I | CCNGG | 3 cut(s) | 117, 814, 1165 |
| MunI | CAATTG | 3 cut(s) | 966, 1907, 2280 |
| Mva1269I | GAATGC | 4 cut(s) | 233, 603, 700, 1594 |
| MvaI | CCWGG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1117, 1222, 1859, 2675, 2801, 2821, 2897 |
| NaeI | GCCGGC | 1 cut(s) | 820 |
| NciI | CCSGG | 2 cut(s) | 814, 1165 |
| NgoMIV | GCCGGC | 1 cut(s) | 818 |
| NlaIV | GGNNCC | 8 cut(s) | 162, 817, 939, 1700, 1701, 1746, 2134, 2144 |
| NmeAIII | GCCGAG | 2 cut(s) | 589, 2101 |
| NmuCI | GTSAC | 4 cut(s) | 145, 1655, 2324, 2605 |
| NsiI | ATGCAT | 3 cut(s) | 537, 2839, 2908 |
| NspI | RCATGY | 6 cut(s) | 136, 1361, 1415, 1843, 2493, 2725 |
| PagI | TCATGA | 3 cut(s) | 1141, 1507, 2050 |
| PciI | ACATGT | 3 cut(s) | 132, 1411, 2489 |
| PciSI | GCTCTTC | 2 cut(s) | 226, 348 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1216 |
| PctI | GAATGC | 4 cut(s) | 233, 603, 700, 1594 |
| PdiI | GCCGGC | 1 cut(s) | 820 |
| PdmI | GAANNNNTTC | 3 cut(s) | 98, 603, 1647 |
| PfeI | GAWTC | 5 cut(s) | 830, 1459, 1672, 2405, 2569 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 908 |
| PinAI | ACCGGT | 1 cut(s) | 360 |
| PkrI | GCNGC | 5 cut(s) | 1375, 1378, 2059, 2464, 2794 |
| PleI | GAGTC | 5 cut(s) | 1309, 2331, 2414, 2513, 2942 |
| PpsI | GAGTC | 5 cut(s) | 1309, 2331, 2414, 2513, 2942 |
| Ppu21I | YACGTR | 1 cut(s) | 1537 |
| PpuMI | RGGWCCY | 1 cut(s) | 2142 |
| PscI | ACATGT | 3 cut(s) | 132, 1411, 2489 |
| PshBI | ATTAAT | 1 cut(s) | 2595 |
| Psp124BI | GAGCTC | 1 cut(s) | 333 |
| Psp5II | RGGWCCY | 1 cut(s) | 2142 |
| Psp6I | CCWGG | 1 cut(s) | 115 |
| PspEI | GGTNACC | 1 cut(s) | 867 |
| PspFI | CCCAGC | 1 cut(s) | 1702 |
| PspGI | CCWGG | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 8 cut(s) | 162, 817, 939, 1700, 1701, 1746, 2134, 2144 |
| PspOMI | GGGCCC | 1 cut(s) | 1698 |
| PspPI | GGNCC | 6 cut(s) | 816, 1258, 1661, 1698, 1699, 2142 |
| PspPPI | RGGWCCY | 1 cut(s) | 2142 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 2991 |
| PstI | CTGCAG | 1 cut(s) | 1375 |
| PsuI | RGATCY | 2 cut(s) | 1546, 2132 |
| RsaI | GTAC | 6 cut(s) | 515, 687, 1362, 1980, 1988, 2530 |
| RsaNI | GTAC | 6 cut(s) | 514, 686, 1361, 1979, 1987, 2529 |
| RseI | CAYNNNNRTG | 5 cut(s) | 41, 986, 2016, 2708, 2891 |
| SacI | GAGCTC | 1 cut(s) | 333 |
| SapI | GCTCTTC | 2 cut(s) | 226, 348 |
| SaqAI | TTAA | 5 cut(s) | 825, 1683, 1830, 2595, 2985 |
| SatI | GCNGC | 5 cut(s) | 1374, 1377, 2058, 2463, 2793 |
| Sau96I | GGNCC | 6 cut(s) | 816, 1258, 1661, 1698, 1699, 2142 |
| ScaI | AGTACT | 1 cut(s) | 2530 |
| SchI | GAGTC | 5 cut(s) | 1310, 2332, 2414, 2513, 2942 |
| ScrFI | CCNGG | 3 cut(s) | 117, 814, 1165 |
| SduI | GDGCHC | 4 cut(s) | 221, 333, 360, 1702 |
| SfaNI | GCATC | 8 cut(s) | 76, 1388, 1562, 1621, 2044, 2503, 2779, 2824 |
| SfcI | CTRYAG | 4 cut(s) | 168, 1364, 1371, 2689 |
| SinI | GGWCC | 3 cut(s) | 1258, 1661, 2142 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 41, 986, 2016, 2708, 2891 |
| SmlI | CTYRAG | 3 cut(s) | 332, 834, 2422 |
| SmoI | CTYRAG | 3 cut(s) | 332, 834, 2422 |
| SsiI | CCGC | 7 cut(s) | 384, 733, 1377, 1418, 1959, 2363, 2626 |
| SspI | AATATT | 2 cut(s) | 28, 1395 |
| SspMI | CTAG | 6 cut(s) | 230, 296, 1695, 1892, 1944, 2409 |
| SstI | GAGCTC | 1 cut(s) | 333 |
| StyD4I | CCNGG | 3 cut(s) | 115, 812, 1163 |
| StyI | CCWWGG | 5 cut(s) | 1062, 1293, 1401, 1694, 2482 |
| TaaI | ACNGT | 7 cut(s) | 508, 1606, 1655, 1762, 1939, 2690, 2821 |
| TaiI | ACGT | 4 cut(s) | 1236, 1539, 2003, 2764 |
| TaqI | TCGA | 5 cut(s) | 366, 894, 1210, 1864, 2558 |
| TatI | WGTACW | 5 cut(s) | 513, 685, 1360, 1978, 2528 |
| TauI | GCSGC | 1 cut(s) | 1379 |
| TfiI | GAWTC | 5 cut(s) | 830, 1459, 1672, 2405, 2569 |
| Tru1I | TTAA | 5 cut(s) | 825, 1683, 1830, 2595, 2985 |
| Tru9I | TTAA | 5 cut(s) | 825, 1683, 1830, 2595, 2985 |
| TscAI | CASTG | 7 cut(s) | 254, 639, 1728, 1855, 1944, 1961, 2693 |
| TseFI | GTSAC | 4 cut(s) | 145, 1655, 2324, 2605 |
| TseI | GCWGC | 4 cut(s) | 1373, 2057, 2462, 2792 |
| Tsp45I | GTSAC | 4 cut(s) | 145, 1655, 2324, 2605 |
| TspDTI | ATGAA | 8 cut(s) | 1328, 1524, 1704, 2043, 2082, 2202, 2523, 2636 |
| TspGWI | ACGGA | 3 cut(s) | 1674, 1887, 2673 |
| TspRI | CASTG | 7 cut(s) | 254, 639, 1728, 1855, 1944, 1961, 2693 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 908 |
| VpaK11BI | GGWCC | 3 cut(s) | 1258, 1661, 2142 |
| VspI | ATTAAT | 1 cut(s) | 2595 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1292 |
| XapI | RAATTY | 3 cut(s) | 1499, 2209, 2877 |
| XbaI | TCTAGA | 1 cut(s) | 2408 |
| XceI | RCATGY | 6 cut(s) | 136, 1361, 1415, 1843, 2493, 2725 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 406 |
| XmaJI | CCTAGG | 1 cut(s) | 1694 |
| XmiI | GTMKAC | 1 cut(s) | 1964 |
| XmnI | GAANNNNTTC | 3 cut(s) | 98, 603, 1647 |
| XspI | CTAG | 6 cut(s) | 230, 296, 1695, 1892, 1944, 2409 |
| ZraI | GACGTC | 1 cut(s) | 1234 |
| ZrmI | AGTACT | 1 cut(s) | 2530 |
| Zsp2I | ATGCAT | 3 cut(s) | 537, 2839, 2908 |