Rorug06G0332800

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009350
Physical Location & Seq
Reverse (-)
48547899 .. 48550629
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0332800.1

Sequence Viewer

Length: 786 bp
ATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGCAGCACCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACGTCTATGGATTTGAAGCACCAAACTTAAGGAAAATTGCAGATAAAGTTGCTAGCACTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGAGCCATACAATCCTAACAACACTCGGAGGAATATGACAGTCTGGCTAAAGGACCATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTTTAATTGCTGCTCTAAAGAACAAAGGGGTATCCAAGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACGGCACTCCACCTGAACTCATGAAACAGTTTAAGGAGGCTTTATCCACTAATAAGGTTGACAACGTTGTGAAAATATTTCCTGGTGTTTCACATGGATGGACTGTTAGGTATCAAGATAACAATGTGACCGCTGTCAAAAGTGCTAACGAAGCTCATCAAGATATGTTGGACTGGTTTACCAAGTATGTTCAAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010119 GO:0010646 GO:0010648 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070297 GO:0070298 GO:0070301 GO:0070887 GO:0071216 GO:0071219 GO:0071236 GO:0071241 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0090333 GO:0097237 GO:0097366 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902531 GO:1902532 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c HisKA Response_reg

Protein Analysis

261

Amino Acids

28.5

Weight (kDa)

9.45

Isoelectric Point (pI)

21.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 49 - 257 7.9e-37 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 4 cut(s) 450, 464, 542, 714
AclI AACGTT 2 cut(s) 385, 648
AclWI GGATC 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 274
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 4 cut(s) 145, 215, 374, 776
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 5 cut(s) 116, 178, 431, 469, 737
AluI AGCT 5 cut(s) 116, 178, 431, 469, 737
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 160
ApeKI GCWGC 4 cut(s) 82, 395, 431, 494
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspS9I GGNCC 3 cut(s) 68, 161, 349
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 2 cut(s) 68, 349
AxyI CCTNAGG 1 cut(s) 109
BbvI GCAGC 4 cut(s) 94, 382, 418, 481
BccI CCATC 2 cut(s) 17, 675
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 666
BciVI GTATCC 1 cut(s) 427
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 2 cut(s) 432, 495
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 5 cut(s) 83, 396, 432, 451, 495
BlsI GCNGC 5 cut(s) 84, 397, 433, 452, 496
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 2 cut(s) 68, 349
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 68, 161, 349
BmiI GGNNCC 2 cut(s) 106, 279
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 163, 761
Bse21I CCTNAGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 686
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 163, 761
BseXI GCAGC 4 cut(s) 94, 382, 418, 481
BshFI GGCC 2 cut(s) 149, 162
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 2 cut(s) 149, 162
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 4 cut(s) 450, 464, 542, 714
BspANI GGCC 2 cut(s) 149, 162
BspCNI CTCAG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 106, 279
BspMAI CTGCAG 2 cut(s) 436, 499
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 226
BsrI ACTGG 2 cut(s) 163, 761
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 337, 612, 688
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 80, 180, 253
BstDEI CTNAG 2 cut(s) 109, 489
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 686
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 257, 734
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 432, 495
BstV1I GCAGC 4 cut(s) 94, 382, 418, 481
Bsu36I CCTNAGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 149, 162
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 686
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 80, 180, 253
CaiI CAGNNNCTG 1 cut(s) 116
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 3 cut(s) 68, 161, 349
Csp6I GTAC 1 cut(s) 23
CviAII CATG 5 cut(s) 20, 269, 353, 604, 677
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 109, 489
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 68, 349
Eco81I CCTNAGG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 5 cut(s) 23, 272, 356, 607, 680
FatI CATG 5 cut(s) 19, 268, 352, 603, 676
Fnu4HI GCNGC 5 cut(s) 83, 396, 432, 451, 495
FokI GGATG 1 cut(s) 693
Fsp4HI GCNGC 5 cut(s) 83, 396, 432, 451, 495
FspBI CTAG 1 cut(s) 252
GluI GCNGC 5 cut(s) 83, 396, 432, 451, 495
HaeIII GGCC 2 cut(s) 149, 162
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 5 cut(s) 23, 272, 356, 607, 680
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 264, 550
Hpy166II GTNNAC 3 cut(s) 6, 643, 762
Hpy188I TCNGA 2 cut(s) 199, 324
Hpy188III TCNNGA 6 cut(s) 111, 281, 527, 604, 698, 743
Hpy8I GTNNAC 3 cut(s) 6, 643, 762
HpyAV CCTTC 3 cut(s) 139, 174, 522
HpyCH4III ACNGT 3 cut(s) 337, 612, 688
HpyCH4IV ACGT 3 cut(s) 201, 385, 648
HpyCH4V TGCA 6 cut(s) 46, 52, 82, 239, 434, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 734
HpyF3I CTNAG 2 cut(s) 109, 489
HpySE526I ACGT 3 cut(s) 201, 385, 648
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 5 cut(s) 23, 272, 356, 607, 680
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 113, 428, 466
Lsp1109I GCAGC 4 cut(s) 94, 382, 418, 481
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 252
MaeII ACGT 3 cut(s) 201, 385, 648
MaeIII GTNAC 5 cut(s) 31, 154, 504, 520, 709
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 386
MluCI AATT 3 cut(s) 234, 390, 575
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 2 cut(s) 115, 732
MnlI CCTC 6 cut(s) 81, 118, 131, 200, 318, 613
MseI TTAA 7 cut(s) 99, 129, 227, 389, 537, 546, 615
MslI CAYNNNNRTG 1 cut(s) 679
MspA1I CMGCKG 1 cut(s) 716
MspCI CTTAAG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 2 cut(s) 257, 734
NcoI CCATGG 1 cut(s) 352
NdeII GATC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 23, 272, 356, 607, 680
NlaIV GGNNCC 2 cut(s) 106, 279
NmuCI GTSAC 3 cut(s) 31, 520, 709
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 5 cut(s) 84, 397, 433, 452, 496
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PscI ACATGT 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 716
Psp1406I AACGTT 2 cut(s) 385, 648
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 106, 279
PspPI GGNCC 3 cut(s) 68, 161, 349
PstI CTGCAG 2 cut(s) 436, 499
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 679
SaqAI TTAA 7 cut(s) 99, 129, 227, 389, 537, 546, 615
SatI GCNGC 5 cut(s) 83, 396, 432, 451, 495
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 3 cut(s) 68, 161, 349
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 2 cut(s) 432, 495
SinI GGWCC 2 cut(s) 68, 349
SmiMI CAYNNNNRTG 1 cut(s) 679
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 234, 390, 575
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 4 cut(s) 450, 464, 542, 714
SspI AATATT 1 cut(s) 660
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 337, 612, 688
TaiI ACGT 3 cut(s) 204, 388, 651
TasI AATT 3 cut(s) 234, 390, 575
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 7 cut(s) 99, 129, 227, 389, 537, 546, 615
Tru9I TTAA 7 cut(s) 99, 129, 227, 389, 537, 546, 615
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 3 cut(s) 31, 520, 709
TseI GCWGC 4 cut(s) 82, 395, 431, 494
Tsp45I GTSAC 3 cut(s) 31, 520, 709
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 68, 349
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 252
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.