Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005609

Physical Location & Seq

Genomic Coordinates Reverse (-)

36108436 .. 36111938

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G415400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCAAACCATGCAATCAAGGGTTGTGCCATTAGAGGAAGGCAAGGACCCCGGAGTTACTGGCAGGACAAACCAAACCAAGGCATTGCCGATAAGGCTACTTCAGTTGTTTGTGCTGTTTGTGCTTTTCTGTATTACTTTCTCAGTCATTAGCATATTGACGATTCGTCATTTTGGAATTAATGGGGTGATGACAACGGTCACGTCCTCTTTCCAGCCATGCTATGAGGAACCGAGTGGTTTGGACCGGTGGATTAAGCCGCCATCAAATCTTCAACACACTATGACTGATAAGGAATTATTGTGGAGGGCTTCTCTTATGCCTAGAATAAAGAAGTATCCTTTTGAGAGAGTTCCAAAGATTGCATTTATGTTCTTGACCAGGGGGCCGTTGCCGCTGGCACCCCTTTGGGAGAGGTTTCTGAAGGGACATGAAGGACGTTATTCAATCTACGTTCATTCACTGCCGTCATTTCAACCTCATTTTCACACTTCGTCCGTTTTTTATGGGAGACACATTCCTAGCCAGGTTTCTGAGTGGGGAAGAATGAGTATGTGTGATGCTGAGAGAAGGCTCCTTGCTAATGCATTGCTTGACATATCCAATGAATGGTTCATTCTTGTTTCCGAATCTTGCATTCCGCTCTATAACTTCAGTGTCATTTACCACTACTTAATGAAATCCAAGTACAGCTTCATCGGTGCATTTGACGACCCTGGGCCATTCGGGAGAGGACGCTATAATAATAACATGGCACCTGAAGTGAATATAACCCAGTGGCGCAAGGGCTCCCAATGGTTTGAAGTTAACCGGAAGCTTGCCATCAGCATTGTCGAAGATACGACATTTTACCAAAAATTTGAAAAGTTCTGTAGACCCGCATGTTATGTTGATGAGCACTATTTCCCCACCATGCTAACCATTCAAGCAGGGAATTCCTTAGCAAACAGAAGCATCACTTGGGTGGATTGGTCAAGGGGTGGACCTCACCCAGCTACCTTTGGAAGAGCTGATATCACTGAGGAATTCTTCAAGAGAATGCTCGAGGGTCATCGCTGCACTTACAACGACCGGAACTCTTCAATCTGCTTTCTTTTTGGAAGAAAATTTGCTCCAAGTGCTATGGAACCCCTTCTGCATTTAGCACCAAAGTTTTTGGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

389

Amino Acids

44.95

Weight (kDa)

9.26

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11730 AT5G25970 AT5G25970 AT5G25970
fragaria_vesca	FvH4_2g32250 FvH4_2g32250
malus_domestica	MD08G1073800.v1.1
prunus_persica	Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1 Prupe.1G415400_v2.0.a1
pyrus_communis	pycom08g06110 pycom15g05820
rosa_chinensis	RchiOBHm_Chr6g0310441
rosa_laevigata	RLG00000010482
rosa_multiflora	Rmu_co8148686.1_g000001 Rmu_sc0020729.1_g000015
rosa_roxburghii	Rroxscaffold_7G00158520
rosa_rugosa	Rorug06G0380400
rosa_samantha	Rh6AG494300 Rh6BG504100 Rh6CG509300 Rh6DG495300
rosa_wichuraiana	Rw6G043010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	400, 754
AccB7I	CCANNNNNTGG	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	874
AciI	CCGC	4 cut(s)	260, 395, 641, 879
AcsI	RAATTY	4 cut(s)	857, 934, 1025, 1106
AcuI	CTGAAG	4 cut(s)	86, 443, 637, 780
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	79, 609
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	8 cut(s)	275, 447, 476, 803, 863, 926, 1033, 1083
AhdI	GACNNNNNGTC	1 cut(s)	165
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	3 cut(s)	380, 525, 715
AjuI	GAANNNNNNNTTGG	6 cut(s)	596, 628, 677, 709, 943, 975
AleI	CACNNNNGTG	1 cut(s)	962
AluBI	AGCT	4 cut(s)	693, 817, 995, 1010
AluI	AGCT	4 cut(s)	693, 817, 995, 1010
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	1043
AoxI	GGCC	2 cut(s)	386, 719
ApeKI	GCWGC	1 cut(s)	1056
ApoI	RAATTY	4 cut(s)	857, 934, 1025, 1106
AseI	ATTAAT	1 cut(s)	180
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	1131
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	5 cut(s)	46, 244, 386, 719, 983
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	199, 980
AvaI	CYCGRG	1 cut(s)	1043
AvaII	GGWCC	3 cut(s)	46, 244, 983
BanI	GGYRCC	2 cut(s)	400, 754
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	1 cut(s)	1043
BccI	CCATC	2 cut(s)	271, 830
BceAI	ACGGC	2 cut(s)	373, 451
BciT130I	CCWGG	3 cut(s)	382, 527, 717
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	2 cut(s)	324, 522
BfmI	CTRYAG	1 cut(s)	871
BfuI	GTATCC	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	3 cut(s)	260, 395, 1057
BlsI	GCNGC	3 cut(s)	261, 396, 1058
Bme1390I	CCNGG	4 cut(s)	51, 382, 527, 717
Bme18I	GGWCC	3 cut(s)	46, 244, 983
BmeRI	GACNNNNNGTC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	1043
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	5 cut(s)	46, 244, 386, 719, 983
BmiI	GGNNCC	8 cut(s)	48, 231, 387, 402, 575, 756, 790, 1128
BmrFI	CCNGG	4 cut(s)	51, 382, 527, 717
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	550, 963
BmuI	ACTGGG	1 cut(s)	769
BoxI	GACNNNNGTC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
Bpu10I	CCTNAGC	1 cut(s)	940
BpuMI	CCSGG	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	49, 78, 381, 715, 716
BsaWI	WCCGGW	3 cut(s)	246, 810, 1071
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 609
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	64, 775
Bse3DI	GCAATG	2 cut(s)	83, 587
BseBI	CCWGG	3 cut(s)	382, 527, 717
BseDI	CCNNGG	5 cut(s)	49, 78, 381, 715, 716
BseLI	CCNNNNNNNGG	2 cut(s)	79, 609
BseMI	GCAATG	2 cut(s)	83, 587
BseMII	CTCAG	4 cut(s)	156, 525, 555, 1011
BseNI	ACTGG	2 cut(s)	64, 775
BseXI	GCAGC	1 cut(s)	1043
BseYI	CCCAGC	1 cut(s)	991
BsgI	GTGCAG	1 cut(s)	1042
Bsh1285I	CGRYCG	1 cut(s)	1072
BshFI	GGCC	2 cut(s)	388, 721
BshNI	GGYRCC	2 cut(s)	400, 754
BshTI	ACCGGT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	1072
BsiHKAI	GWGCWC	1 cut(s)	900
BsiHKCI	CYCGRG	1 cut(s)	1043
BsiSI	CCGG	4 cut(s)	51, 247, 811, 1072
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	79, 609
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	2 cut(s)	636, 1044
BsnI	GGCC	2 cut(s)	388, 721
BsoBI	CYCGRG	1 cut(s)	1043
Bsp1286I	GDGCHC	2 cut(s)	791, 900
BspACI	CCGC	4 cut(s)	260, 395, 641, 879
BspANI	GGCC	2 cut(s)	388, 721
BspCNI	CTCAG	4 cut(s)	155, 526, 556, 1012
BspLI	GGNNCC	8 cut(s)	48, 231, 387, 402, 575, 756, 790, 1128
BspQI	GCTCTTC	1 cut(s)	1000
BspT107I	GGYRCC	2 cut(s)	400, 754
BsrBI	CCGCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	83, 587
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	64, 775
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	5 cut(s)	49, 78, 381, 715, 716
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	382, 527, 717
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	1000, 1084
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	399, 819
BstDEI	CTNAG	5 cut(s)	142, 534, 564, 940, 1020
BstHHI	GCGC	1 cut(s)	783
BstMAI	GTCTC	1 cut(s)	505
BstMCI	CGRYCG	1 cut(s)	1072
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 94, 121, 394, 1118
BstNI	CCWGG	3 cut(s)	382, 527, 717
BstNSI	RCATGY	1 cut(s)	885
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	4 cut(s)	49, 380, 525, 715
BstSFI	CTRYAG	1 cut(s)	871
BstV1I	GCAGC	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	388, 721
BtgZI	GCGATG	1 cut(s)	1037
BtrI	CACGTC	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	4 cut(s)	461, 661, 782, 1017
Cac8I	GCNNGC	2 cut(s)	399, 819
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	5 cut(s)	46, 244, 386, 719, 983
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	688
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	6 cut(s)	10, 219, 431, 751, 882, 913
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	5 cut(s)	142, 534, 564, 940, 1020
DriI	GACNNNNNGTC	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	1000, 1084
Eam1105I	GACNNNNNGTC	1 cut(s)	165
EarI	CTCTTC	2 cut(s)	1000, 1084
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	1015
Eco47I	GGWCC	3 cut(s)	46, 244, 983
Eco57I	CTGAAG	4 cut(s)	86, 443, 637, 780
Eco88I	CYCGRG	1 cut(s)	1043
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRI	GAATTC	2 cut(s)	934, 1025
EcoRII	CCWGG	3 cut(s)	380, 525, 715
EcoRV	GATATC	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	13, 222, 434, 754, 885, 916
FalI	AAGNNNNNCTT	4 cut(s)	677, 709, 943, 975
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	6 cut(s)	9, 218, 430, 750, 881, 912
FauI	CCCGC	1 cut(s)	886
FblI	GTMKAC	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	260, 395, 1057
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	3 cut(s)	260, 395, 1057
FspBI	CTAG	2 cut(s)	324, 522
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	3 cut(s)	260, 395, 1057
GsaI	CCCAGC	1 cut(s)	995
HaeIII	GGCC	2 cut(s)	388, 721
HapII	CCGG	4 cut(s)	51, 247, 811, 1072
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	13, 222, 434, 754, 885, 916
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	2 cut(s)	163, 629
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	4 cut(s)	51, 247, 811, 1072
HphI	GGTGA	2 cut(s)	199, 980
Hpy166II	GTNNAC	3 cut(s)	808, 875, 983
Hpy188I	TCNGA	3 cut(s)	423, 535, 628
Hpy188III	TCNNGA	3 cut(s)	376, 727, 1033
Hpy8I	GTNNAC	3 cut(s)	808, 875, 983
HpyAV	CCTTC	5 cut(s)	32, 418, 428, 564, 1142
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	3 cut(s)	203, 439, 453
HpyCH4V	TGCA	8 cut(s)	4, 13, 365, 587, 636, 704, 1059, 1138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 94, 121, 394, 1118
HpyF3I	CTNAG	5 cut(s)	142, 534, 564, 940, 1020
HpySE526I	ACGT	3 cut(s)	203, 439, 453
Hsp92II	CATG	6 cut(s)	13, 222, 434, 754, 885, 916
HspAI	GCGC	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	808
LguI	GCTCTTC	1 cut(s)	1000
LmnI	GCTCC	3 cut(s)	579, 794, 1117
Lsp1109I	GCAGC	1 cut(s)	1043
LweI	GCATC	2 cut(s)	550, 963
MaeI	CTAG	2 cut(s)	324, 522
MaeII	ACGT	3 cut(s)	203, 439, 453
MaeIII	GTNAC	2 cut(s)	55, 199
MbiI	CCGCTC	1 cut(s)	643
MboII	GAAGA	7 cut(s)	263, 555, 848, 1017, 1021, 1071, 1113
MhlI	GDGCHC	2 cut(s)	791, 900
MluCI	AATT	6 cut(s)	177, 296, 857, 934, 1025, 1106
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	1131
MseI	TTAA	4 cut(s)	180, 255, 674, 807
MslI	CAYNNNNRTG	1 cut(s)	962
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	4 cut(s)	51, 247, 811, 1072
MspR9I	CCNGG	4 cut(s)	51, 382, 527, 717
Mva1269I	GAATGC	2 cut(s)	636, 1044
MvaI	CCWGG	3 cut(s)	382, 527, 717
MwoI	GCNNNNNNNGC	5 cut(s)	10, 94, 121, 394, 1118
NciI	CCSGG	1 cut(s)	51
NlaIII	CATG	6 cut(s)	13, 222, 434, 754, 885, 916
NlaIV	GGNNCC	8 cut(s)	48, 231, 387, 402, 575, 756, 790, 1128
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	885
OliI	CACNNNNGTG	1 cut(s)	962
PaeR7I	CTCGAG	1 cut(s)	1043
PasI	CCCWGGG	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	1000
PctI	GAATGC	2 cut(s)	636, 1044
PdmI	GAANNNNTTC	1 cut(s)	1131
PfeI	GAWTC	2 cut(s)	163, 629
PflMI	CCANNNNNTGG	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	261, 396, 1058
PpuMI	RGGWCCY	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	380, 525, 715
PspFI	CCCAGC	1 cut(s)	991
PspGI	CCWGG	3 cut(s)	380, 525, 715
PspN4I	GGNNCC	8 cut(s)	48, 231, 387, 402, 575, 756, 790, 1128
PspPI	GGNCC	5 cut(s)	46, 244, 386, 719, 983
PspPPI	RGGWCCY	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	962
SapI	GCTCTTC	1 cut(s)	1000
SaqAI	TTAA	4 cut(s)	180, 255, 674, 807
SatI	GCNGC	3 cut(s)	260, 395, 1057
Sau96I	GGNCC	5 cut(s)	46, 244, 386, 719, 983
ScrFI	CCNGG	4 cut(s)	51, 382, 527, 717
SduI	GDGCHC	2 cut(s)	791, 900
SfaNI	GCATC	2 cut(s)	550, 963
SfcI	CTRYAG	1 cut(s)	871
Sfr274I	CTCGAG	1 cut(s)	1043
SinI	GGWCC	3 cut(s)	46, 244, 983
SlaI	CTCGAG	1 cut(s)	1043
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
Sse9I	AATT	6 cut(s)	177, 296, 857, 934, 1025, 1106
SsiI	CCGC	4 cut(s)	260, 395, 641, 879
SspMI	CTAG	2 cut(s)	324, 522
StyD4I	CCNGG	4 cut(s)	49, 380, 525, 715
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	3 cut(s)	206, 442, 456
TaqI	TCGA	2 cut(s)	834, 1044
TasI	AATT	6 cut(s)	177, 296, 857, 934, 1025, 1106
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	2 cut(s)	262, 397
TfiI	GAWTC	2 cut(s)	163, 629
Tru1I	TTAA	4 cut(s)	180, 255, 674, 807
Tru9I	TTAA	4 cut(s)	180, 255, 674, 807
TscAI	CASTG	4 cut(s)	468, 661, 782, 1024
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	1056
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	6 cut(s)	446, 447, 604, 621, 685, 692
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	4 cut(s)	468, 661, 782, 1024
Van91I	CCANNNNNTGG	1 cut(s)	609
VpaK11BI	GGWCC	3 cut(s)	46, 244, 983
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	4 cut(s)	857, 934, 1025, 1106
XceI	RCATGY	1 cut(s)	885
XhoI	CTCGAG	1 cut(s)	1043
XmiI	GTMKAC	1 cut(s)	874
XmnI	GAANNNNTTC	1 cut(s)	1131
XspI	CTAG	2 cut(s)	324, 522
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.